Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239754289

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754289 PREDICTED: hypothetical protein [Homo sapiens]
         (178 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754289 PREDICTED: hypothetical protein [Homo sapiens]           369   e-103
gi|239748826 PREDICTED: hypothetical protein XP_002346831 [Homo ...   369   e-103
gi|239742857 PREDICTED: hypothetical protein XP_002342664 [Homo ...   369   e-103
gi|239740873 PREDICTED: hypothetical protein XP_002344073 [Homo ...   369   e-103
gi|239740807 PREDICTED: hypothetical protein [Homo sapiens]           369   e-103
gi|239513965 PREDICTED: hypothetical protein [Homo sapiens]           369   e-103
gi|239740757 PREDICTED: hypothetical protein [Homo sapiens]           296   5e-81
gi|239740703 PREDICTED: hypothetical protein [Homo sapiens]           296   5e-81
gi|239755954 PREDICTED: hypothetical protein [Homo sapiens]            44   1e-04
gi|239750480 PREDICTED: hypothetical protein [Homo sapiens]            44   1e-04
gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]               39   0.002
gi|33286436 gametogenetin [Homo sapiens]                               39   0.002
gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens]        39   0.003
gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens]        36   0.015
gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens]        36   0.015
gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]            36   0.020
gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo ...    36   0.020
gi|19111150 angiomotin isoform 2 [Homo sapiens]                        35   0.026
gi|166064029 angiomotin isoform 1 [Homo sapiens]                       35   0.026
gi|38683851 round spermatid basic protein 1 [Homo sapiens]             35   0.026
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p...    35   0.034
gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo ...    35   0.034
gi|50345881 cytoplasmic polyadenylation element binding protein ...    35   0.044
gi|27597078 TYRO3 protein tyrosine kinase [Homo sapiens]               35   0.044
gi|239751047 PREDICTED: hypothetical protein isoform 3 [Homo sap...    34   0.058
gi|239751045 PREDICTED: hypothetical protein isoform 2 [Homo sap...    34   0.058
gi|239751043 PREDICTED: hypothetical protein isoform 1 [Homo sap...    34   0.058
gi|239745488 PREDICTED: hypothetical protein XP_002343476 isofor...    34   0.058
gi|239745486 PREDICTED: hypothetical protein XP_002343475 isofor...    34   0.058
gi|239745484 PREDICTED: hypothetical protein XP_002343474 isofor...    34   0.058

>gi|239754289 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 178

 Score =  369 bits (947), Expect = e-103
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60
           MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP
Sbjct: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60

Query: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120
           PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS
Sbjct: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120

Query: 121 RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD 178
           RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD
Sbjct: 121 RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD 178


>gi|239748826 PREDICTED: hypothetical protein XP_002346831 [Homo
           sapiens]
          Length = 178

 Score =  369 bits (947), Expect = e-103
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60
           MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP
Sbjct: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60

Query: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120
           PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS
Sbjct: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120

Query: 121 RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD 178
           RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD
Sbjct: 121 RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD 178


>gi|239742857 PREDICTED: hypothetical protein XP_002342664 [Homo
           sapiens]
          Length = 178

 Score =  369 bits (947), Expect = e-103
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60
           MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP
Sbjct: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60

Query: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120
           PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS
Sbjct: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120

Query: 121 RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD 178
           RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD
Sbjct: 121 RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD 178


>gi|239740873 PREDICTED: hypothetical protein XP_002344073 [Homo
           sapiens]
          Length = 178

 Score =  369 bits (947), Expect = e-103
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60
           MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP
Sbjct: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60

Query: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120
           PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS
Sbjct: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120

Query: 121 RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD 178
           RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD
Sbjct: 121 RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD 178


>gi|239740807 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 178

 Score =  369 bits (947), Expect = e-103
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60
           MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP
Sbjct: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60

Query: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120
           PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS
Sbjct: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120

Query: 121 RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD 178
           RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD
Sbjct: 121 RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD 178


>gi|239513965 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 178

 Score =  369 bits (947), Expect = e-103
 Identities = 178/178 (100%), Positives = 178/178 (100%)

Query: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60
           MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP
Sbjct: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60

Query: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120
           PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS
Sbjct: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120

Query: 121 RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD 178
           RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD
Sbjct: 121 RRGWDGTWTPRFSRPRDGLVPRSRGKRLQKICRFSLLVLRTHLGPDSVASPYVGARVD 178


>gi|239740757 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score =  296 bits (759), Expect = 5e-81
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60
           MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP
Sbjct: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60

Query: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120
           PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS
Sbjct: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120

Query: 121 RRGWDGTWTPRFSRPRDGLVP 141
           RRGWDGTWTPRFSRPRDGLVP
Sbjct: 121 RRGWDGTWTPRFSRPRDGLVP 141



 Score = 27.3 bits (59), Expect = 7.1
 Identities = 12/12 (100%), Positives = 12/12 (100%)

Query: 167 SVASPYVGARVD 178
           SVASPYVGARVD
Sbjct: 297 SVASPYVGARVD 308


>gi|239740703 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 308

 Score =  296 bits (759), Expect = 5e-81
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60
           MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP
Sbjct: 1   MPVTCGVRCSSYRLSSHVLLAFWAFAGVVMVTGRRPPTRAPQPRRRRRRLGLQPFALPPP 60

Query: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120
           PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS
Sbjct: 61  PRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHS 120

Query: 121 RRGWDGTWTPRFSRPRDGLVP 141
           RRGWDGTWTPRFSRPRDGLVP
Sbjct: 121 RRGWDGTWTPRFSRPRDGLVP 141



 Score = 27.3 bits (59), Expect = 7.1
 Identities = 12/12 (100%), Positives = 12/12 (100%)

Query: 167 SVASPYVGARVD 178
           SVASPYVGARVD
Sbjct: 297 SVASPYVGARVD 308


>gi|239755954 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 274

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 47/157 (29%), Positives = 59/157 (37%), Gaps = 33/157 (21%)

Query: 39  RAPQPRRRRRRLGLQP--FALPPPPRLSLGPGSWAKFARSATAAQTA-----------AP 85
           R P PR R  R  + P  +           P S A  +RS  A  T             P
Sbjct: 53  RKPSPRERENREAVSPITYGCSDTTHRRTDPESGAGGSRSLLAEMTTQHAANARLPDPGP 112

Query: 86  ATAAAMARALGPYVTSACSSATPAPPAGGDVTHHSRRGWDGTWTPRFSRPRDGLVPRSRG 145
           AT + +A  L P      +  TPAP +   VTH       G W+PR  R R  L   SRG
Sbjct: 113 ATQSLLAAQLSP------AGDTPAPQS--HVTHRGPAPSPGWWSPRRRRARLKLAFASRG 164

Query: 146 KRLQKICRFS--------LLVLRTHLGPDSVASPYVG 174
              +   RF+        L V+  HLG    A P+ G
Sbjct: 165 SEPRFCIRFTSWQVVSGFLSVVSAHLG----ALPFAG 197


>gi|239750480 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 274

 Score = 43.5 bits (101), Expect = 1e-04
 Identities = 47/157 (29%), Positives = 59/157 (37%), Gaps = 33/157 (21%)

Query: 39  RAPQPRRRRRRLGLQP--FALPPPPRLSLGPGSWAKFARSATAAQTA-----------AP 85
           R P PR R  R  + P  +           P S A  +RS  A  T             P
Sbjct: 53  RKPSPRERENREAVSPITYGCSDTTHRRTDPESGAGGSRSLLAEMTTQHAANARLPDPGP 112

Query: 86  ATAAAMARALGPYVTSACSSATPAPPAGGDVTHHSRRGWDGTWTPRFSRPRDGLVPRSRG 145
           AT + +A  L P      +  TPAP +   VTH       G W+PR  R R  L   SRG
Sbjct: 113 ATQSLLAAQLSP------AGDTPAPQS--HVTHRGPAPSPGWWSPRRRRARLKLAFASRG 164

Query: 146 KRLQKICRFS--------LLVLRTHLGPDSVASPYVG 174
              +   RF+        L V+  HLG    A P+ G
Sbjct: 165 SEPRFCIRFTSWQVVSGFLSVVSAHLG----ALPFAG 197


>gi|20127580 BTB (POZ) domain containing 2 [Homo sapiens]
          Length = 525

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 23/55 (41%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 60  PPRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAPPAGG 114
           PP + +GPG+      SA AA T AP  AAA A A      +A     PAPP  G
Sbjct: 13  PPGVGVGPGTGGSPGPSANAAATPAPGNAAAAAAAAAA-AAAAPGPTPPAPPGPG 66


>gi|33286436 gametogenetin [Homo sapiens]
          Length = 652

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 36/112 (32%), Positives = 49/112 (43%), Gaps = 14/112 (12%)

Query: 36  PPTRAPQPRRRRRRLGLQPFALPPPPRLSLGPGSWAKFARSATAAQTAAPATAAAMA--R 93
           PP   P P    +   LQP  LP  P L+ G G      + +  A TAAPA   A+A  +
Sbjct: 438 PPLPPPTPPPTLQPPALQPTPLPVAPPLTPGLGH-----KESALAPTAAPALPPALAADQ 492

Query: 94  ALGPYVTSACSSATPAP------PAGGDVTHHSRRGWDGTWTPRFSRPRDGL 139
           A  P    A + A P+P      PA   +   +RR   G+   R +  +DGL
Sbjct: 493 APAPSPAPAPTVAEPSPPVSAPAPAAAPIKTRTRRN-KGSRAARGATRKDGL 543



 Score = 29.6 bits (65), Expect = 1.4
 Identities = 34/114 (29%), Positives = 45/114 (39%), Gaps = 21/114 (18%)

Query: 35  RPPTRAPQPRRRRRRLGLQPFALPPPPRLSLGPGSWAKFARSAT-----------AAQTA 83
           +P  RAP  RR      ++P       RL+ G G W  F  SAT           A+ + 
Sbjct: 18  QPSDRAPDSRRTSL---VEPEMTSQAMRLTRGLGVW--FPGSATPPGLMVPREPQASPST 72

Query: 84  APATAAAMARALGPYVTSACSSATPAPPAGGDVTHHSRRGWD---GTWTPRFSR 134
            P T    +  + P   +A  SA P  PAG  +   S+  W    GT  PR  R
Sbjct: 73  LPLTLERPSPVMPPPEEAAAVSAPPPAPAGTLLPGPSK--WQKPAGTPVPRIRR 124


>gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens]
          Length = 446

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 36/104 (34%), Positives = 43/104 (41%), Gaps = 20/104 (19%)

Query: 36  PPTRAPQPRRRRRRLGLQPFALPPPPRLSL-----------GPGSWAKFARSATAA---- 80
           PP  A  P  R    GLQ   + PP   S            G G  A  A +A AA    
Sbjct: 291 PPPPALPPMHRYDMAGLQYSPMMPPGAQSYMNVAAAAAAASGYGGMAPSATAAAAAAYGQ 350

Query: 81  --QTAAPATAAAMARALGPYVTSACSSATPAPPAGGDVTHHSRR 122
              TAA A AAA A +LGP  +   S  +  PPA   +  HS+R
Sbjct: 351 QPATAAAAAAAAAAMSLGPMGSVVKSEPSSPPPA---IASHSQR 391


>gi|88853066 sperm associated antigen 8 isoform 1 [Homo sapiens]
          Length = 485

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 44  RRRRRRLGLQPFALPPPPRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVT--- 100
           R R R L +QP +    P     P S     RSA AA TAA A AA+ A A   + T   
Sbjct: 11  RSRSRSLDIQPSSEGLGPTSEPFPSS-DDSPRSALAAATAAAAAAASAAAATAAFTTAKA 69

Query: 101 SACSSATPAP 110
           +A S+ TPAP
Sbjct: 70  AALSTKTPAP 79


>gi|27502373 sperm associated antigen 8 isoform 2 [Homo sapiens]
          Length = 501

 Score = 36.2 bits (82), Expect = 0.015
 Identities = 29/70 (41%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 44  RRRRRRLGLQPFALPPPPRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVT--- 100
           R R R L +QP +    P     P S     RSA AA TAA A AA+ A A   + T   
Sbjct: 11  RSRSRSLDIQPSSEGLGPTSEPFPSS-DDSPRSALAAATAAAAAAASAAAATAAFTTAKA 69

Query: 101 SACSSATPAP 110
           +A S+ TPAP
Sbjct: 70  AALSTKTPAP 79


>gi|239751929 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 382

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 38/117 (32%), Positives = 45/117 (38%), Gaps = 34/117 (29%)

Query: 35  RPPTRA--------PQPRRRRRR--LGLQPFALPPPPRLSLGPGSWAKFARSATAAQTAA 84
           RPPTRA         QP RRRRR    L P   P  P  S  PG  A+ AR+A  +    
Sbjct: 62  RPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGAR-ARAARVSPPTP 120

Query: 85  PATAAAMARALGPYVTSACSSATPAPPA-------------GGDVTHHSRRGWDGTW 128
           P +           +  A  S TPAP A             GG ++   RR   G W
Sbjct: 121 PRSG----------LDPAVPSPTPAPLARCRQTRAGLRLSTGGRLSPPLRRAASGEW 167


>gi|239746415 PREDICTED: hypothetical protein XP_002344217 [Homo
           sapiens]
          Length = 382

 Score = 35.8 bits (81), Expect = 0.020
 Identities = 38/117 (32%), Positives = 45/117 (38%), Gaps = 34/117 (29%)

Query: 35  RPPTRA--------PQPRRRRRR--LGLQPFALPPPPRLSLGPGSWAKFARSATAAQTAA 84
           RPPTRA         QP RRRRR    L P   P  P  S  PG  A+ AR+A  +    
Sbjct: 62  RPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGAR-ARAARVSPPTP 120

Query: 85  PATAAAMARALGPYVTSACSSATPAPPA-------------GGDVTHHSRRGWDGTW 128
           P +           +  A  S TPAP A             GG ++   RR   G W
Sbjct: 121 PRSG----------LDPAVPSPTPAPLARCRQTRAGLRLSTGGRLSPPLRRAASGEW 167


>gi|19111150 angiomotin isoform 2 [Homo sapiens]
          Length = 675

 Score = 35.4 bits (80), Expect = 0.026
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 54  PFALPPPPRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSA-TPAPPA 112
           P A  P P  +L P      A+++  AQT AP +A A+A    P  T A + A  PA PA
Sbjct: 564 PAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTPAVAQAEVPASPA 623

Query: 113 GGDVTH 118
            G   H
Sbjct: 624 TGPGPH 629



 Score = 28.1 bits (61), Expect = 4.1
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 32  TGRRP-PTRAPQPRRRRRRLGLQPFALPPPPRLSLGPGSWAKFARSAT----AAQTAAPA 86
           TG R   T+  +     +   + P ++P P   +    +    A + T    AA   A A
Sbjct: 448 TGSRDCSTQTERGTESNKTAAVAPISVPAPVAAAATAAAITATAATITTTMVAAAPVAVA 507

Query: 87  TAAAMARALGPY-VTSACSSATPAPPAGGDV 116
            AAA A A  P   T+A ++A  +P A G +
Sbjct: 508 AAAAPAAAAAPSPATAAATAAAVSPAAAGQI 538


>gi|166064029 angiomotin isoform 1 [Homo sapiens]
          Length = 1084

 Score = 35.4 bits (80), Expect = 0.026
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 54   PFALPPPPRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSA-TPAPPA 112
            P A  P P  +L P      A+++  AQT AP +A A+A    P  T A + A  PA PA
Sbjct: 973  PAAPAPVPAPALVPVPAPAAAQASAPAQTQAPTSAPAVAPTPAPTPTPAVAQAEVPASPA 1032

Query: 113  GGDVTH 118
             G   H
Sbjct: 1033 TGPGPH 1038



 Score = 28.1 bits (61), Expect = 4.1
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 32  TGRRP-PTRAPQPRRRRRRLGLQPFALPPPPRLSLGPGSWAKFARSAT----AAQTAAPA 86
           TG R   T+  +     +   + P ++P P   +    +    A + T    AA   A A
Sbjct: 857 TGSRDCSTQTERGTESNKTAAVAPISVPAPVAAAATAAAITATAATITTTMVAAAPVAVA 916

Query: 87  TAAAMARALGPY-VTSACSSATPAPPAGGDV 116
            AAA A A  P   T+A ++A  +P A G +
Sbjct: 917 AAAAPAAAAAPSPATAAATAAAVSPAAAGQI 947


>gi|38683851 round spermatid basic protein 1 [Homo sapiens]
          Length = 802

 Score = 35.4 bits (80), Expect = 0.026
 Identities = 35/111 (31%), Positives = 41/111 (36%), Gaps = 31/111 (27%)

Query: 34  RRPPTRAPQPRRRRRRLG---------------LQPFALPPPPRLSLGPGSWAKFARSAT 78
           + PP   P  RRR R+                 ++P  LPPPP  SL P      A  A 
Sbjct: 105 QEPPLAPPHRRRRSRQHPGPLPPTNAAPTVPGPVEPLLLPPPPPPSLAP------AGPAV 158

Query: 79  AAQTAAPATAAAMARALGPYVTSACSSATPAPPAGGDV---THHSRRGWDG 126
           AA   AP+T+A       P   SA       P   G      HH  RG DG
Sbjct: 159 AAPLPAPSTSALF--TFSPLTVSAA-----GPKHKGHKERHKHHHHRGPDG 202


>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
            potassium channel 4 [Homo sapiens]
          Length = 1203

 Score = 35.0 bits (79), Expect = 0.034
 Identities = 33/112 (29%), Positives = 41/112 (36%), Gaps = 19/112 (16%)

Query: 33   GRRPPTRA---PQPRRRRRRLGLQPFALPPPPRLSLGPGSWAKFARSATAAQTAAPATAA 89
            G R P  A   P P   R  LGL    LPPPP         +  + S++  Q   P    
Sbjct: 932  GARSPQAAQPSPAPPGARGGLGLPEHFLPPPP---------SSRSPSSSPGQLGQPPGEL 982

Query: 90   AMARALGPYVTSACSSATPAPPAGGDVTHHSRRGWDGTWTPRFSRPRDGLVP 141
            ++  A GP  T       P PP+          G  G  +P    PR GL P
Sbjct: 983  SLGLATGPLSTPETPPRQPEPPS-------LVAGASGGASPVGFTPRGGLSP 1027



 Score = 34.3 bits (77), Expect = 0.058
 Identities = 25/86 (29%), Positives = 37/86 (43%), Gaps = 8/86 (9%)

Query: 37   PTRAPQPRRRRRRLGLQPFALPPPPRL-------SLGPGSWAKFARSATAAQTAAPATAA 89
            P+  P+       L L P + PPPP++        L PG   +  +  +A+Q A P   A
Sbjct: 1039 PSAPPRASGSHGSLLLPPASSPPPPQVPQRRGTPPLTPGRLTQDLKLISASQPALPQDGA 1098

Query: 90   AMARALGPYVTSACSSATPA-PPAGG 114
               R   P+ +    +A P  P AGG
Sbjct: 1099 QTLRRASPHSSGESMAAFPLFPRAGG 1124


>gi|239757414 PREDICTED: hypothetical protein XP_002345432 [Homo
           sapiens]
          Length = 176

 Score = 35.0 bits (79), Expect = 0.034
 Identities = 36/113 (31%), Positives = 40/113 (35%), Gaps = 21/113 (18%)

Query: 35  RPPTRA--------PQPRRRRRR--LGLQPFALPPPPRLSLGPGSWAKFARSATAAQTAA 84
           RPPTRA         QP RRRRR    L P   P  P  S  PG       SA      +
Sbjct: 62  RPPTRAGPAQRSSCTQPHRRRRRGTRRLPPALTPAGPYHSARPGGGGPCQGSA----RFS 117

Query: 85  PATAAAMARALGPYVTSACSSATPAPPAGGDVTHH-------SRRGWDGTWTP 130
           P  AA   +  GP   S  +   P    G    H        + RG  G  TP
Sbjct: 118 PDPAAVRPQPRGPQPDSGSARQVPPDSRGAQALHRGAPLASPAPRGVRGVETP 170


>gi|50345881 cytoplasmic polyadenylation element binding protein 3
           [Homo sapiens]
          Length = 698

 Score = 34.7 bits (78), Expect = 0.044
 Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 11/78 (14%)

Query: 36  PPTRAPQPRRRRRRLGLQPFALPPPPRLSLGPGSWAKFA-RSATAA------QTAAPATA 88
           PP  APQP +  +     P A PP  R S    S A +A RSA AA       T+ P+++
Sbjct: 168 PPAPAPQPAQPAQ----PPQAQPPQQRRSPASPSQAPYAQRSAAAAYGHQPIMTSKPSSS 223

Query: 89  AAMARALGPYVTSACSSA 106
           +A+A A      S+ SS+
Sbjct: 224 SAVAAAAAAAAASSASSS 241


>gi|27597078 TYRO3 protein tyrosine kinase [Homo sapiens]
          Length = 890

 Score = 34.7 bits (78), Expect = 0.044
 Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 44  RRRRRRLGLQPFALPPPPRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSAC 103
           RR   R GL P  LPPPPRL L           A  A    P +AAA  + +G  V    
Sbjct: 4   RRSMGRPGLPPLPLPPPPRLGL---------LLAALASLLLPESAAAGLKLMGAPVKLTV 54

Query: 104 SSATP 108
           S   P
Sbjct: 55  SQGQP 59


>gi|239751047 PREDICTED: hypothetical protein isoform 3 [Homo
           sapiens]
          Length = 196

 Score = 34.3 bits (77), Expect = 0.058
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 21/78 (26%)

Query: 51  GLQPFALPPPPRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAP 110
           G      PPPP  S        F+  + AA  AA AT+ A+              A+ AP
Sbjct: 134 GTSSSGTPPPPAFS--------FSCLSLAAAAAAAATSGAL-------------DASSAP 172

Query: 111 PAGGDVTHHSRRGWDGTW 128
             GG V      GW G+W
Sbjct: 173 GCGGSVHEGGSGGWGGSW 190


>gi|239751045 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 196

 Score = 34.3 bits (77), Expect = 0.058
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 21/78 (26%)

Query: 51  GLQPFALPPPPRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAP 110
           G      PPPP  S        F+  + AA  AA AT+ A+              A+ AP
Sbjct: 134 GTSSSGTPPPPAFS--------FSCLSLAAAAAAAATSGAL-------------DASSAP 172

Query: 111 PAGGDVTHHSRRGWDGTW 128
             GG V      GW G+W
Sbjct: 173 GCGGSVHEGGSGGWGGSW 190


>gi|239751043 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 196

 Score = 34.3 bits (77), Expect = 0.058
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 21/78 (26%)

Query: 51  GLQPFALPPPPRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAP 110
           G      PPPP  S        F+  + AA  AA AT+ A+              A+ AP
Sbjct: 134 GTSSSGTPPPPAFS--------FSCLSLAAAAAAAATSGAL-------------DASSAP 172

Query: 111 PAGGDVTHHSRRGWDGTW 128
             GG V      GW G+W
Sbjct: 173 GCGGSVHEGGSGGWGGSW 190


>gi|239745488 PREDICTED: hypothetical protein XP_002343476 isoform 3
           [Homo sapiens]
          Length = 196

 Score = 34.3 bits (77), Expect = 0.058
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 21/78 (26%)

Query: 51  GLQPFALPPPPRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAP 110
           G      PPPP  S        F+  + AA  AA AT+ A+              A+ AP
Sbjct: 134 GTSSSGTPPPPAFS--------FSCLSLAAAAAAAATSGAL-------------DASSAP 172

Query: 111 PAGGDVTHHSRRGWDGTW 128
             GG V      GW G+W
Sbjct: 173 GCGGSVHEGGSGGWGGSW 190


>gi|239745486 PREDICTED: hypothetical protein XP_002343475 isoform 2
           [Homo sapiens]
          Length = 196

 Score = 34.3 bits (77), Expect = 0.058
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 21/78 (26%)

Query: 51  GLQPFALPPPPRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAP 110
           G      PPPP  S        F+  + AA  AA AT+ A+              A+ AP
Sbjct: 134 GTSSSGTPPPPAFS--------FSCLSLAAAAAAAATSGAL-------------DASSAP 172

Query: 111 PAGGDVTHHSRRGWDGTW 128
             GG V      GW G+W
Sbjct: 173 GCGGSVHEGGSGGWGGSW 190


>gi|239745484 PREDICTED: hypothetical protein XP_002343474 isoform 1
           [Homo sapiens]
          Length = 196

 Score = 34.3 bits (77), Expect = 0.058
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 21/78 (26%)

Query: 51  GLQPFALPPPPRLSLGPGSWAKFARSATAAQTAAPATAAAMARALGPYVTSACSSATPAP 110
           G      PPPP  S        F+  + AA  AA AT+ A+              A+ AP
Sbjct: 134 GTSSSGTPPPPAFS--------FSCLSLAAAAAAAATSGAL-------------DASSAP 172

Query: 111 PAGGDVTHHSRRGWDGTW 128
             GG V      GW G+W
Sbjct: 173 GCGGSVHEGGSGGWGGSW 190


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.135    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,861,228
Number of Sequences: 37866
Number of extensions: 483723
Number of successful extensions: 3500
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 280
Number of HSP's that attempted gapping in prelim test: 3058
Number of HSP's gapped (non-prelim): 660
length of query: 178
length of database: 18,247,518
effective HSP length: 96
effective length of query: 82
effective length of database: 14,612,382
effective search space: 1198215324
effective search space used: 1198215324
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press