Guide to the Human Genome
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Name: LOC100134291 Sequence: fasta or formatted (81aa) NCBI GI: 239754222
Description:

PREDICTED: similar to dual specificity phosphatase 22

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9          8           2
 C cysteine            1.2          1           1
 D aspartate           3.7          3           1
 E glutamate          11.1          9           2
 F phenylalanine       6.2          5           1
 G glycine             6.2          5           1
 H histidine           3.7          3           1
 I isoleucine          2.5          2           1
 K lysine              4.9          4           1
 L leucine             9.9          8           1
 M methionine          1.2          1           1
 N asparagine          3.7          3           1
 P proline             3.7          3           1
 Q glutamine           7.4          6           1
 R arginine            7.4          6           2
 S serine              2.5          2           1
 T threonine           3.7          3           1
 V valine              4.9          4           1
 W tryptophan          3.7          3           1
 Y tyrosine            2.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to dual specificity phosphatase ... 
DUSP22                1.000   dual specificity phosphatase 22 
DUSP15                0.284   dual specificity phosphatase 15 isoform b 
DUSP15                0.284   dual specificity phosphatase 15 isoform b 
DUSP15                0.284   dual specificity phosphatase 15 isoform a 
SSH1                  0.074   slingshot 1 isoform 1 
SSH1                  0.074   slingshot 1 isoform 3 
SSH1                  0.074   slingshot 1 isoform 2 
LOC100290651          0.061   PREDICTED: hypothetical protein XP_002347464 
STYX                  0.061   serine/threonine/tyrosine interacting protein [Homo...
STYX                  0.061   serine/threonine/tyrosine interacting protein 
DUSP14                0.034   dual specificity phosphatase 14 
DUSP27                0.027   dual specificity phosphatase 27 
SSH3                  0.020   slingshot homolog 3 
DUSP28                0.020   dual specificity phosphatase 28 
SSH2                  0.020   slingshot 2 
MACF1                 0.014   microfilament and actin filament cross-linker protei...
MACF1                 0.014   microfilament and actin filament cross-linker protei...
NLRP14                0.014   NLR family, pyrin domain containing 14 
DUSP5                 0.014   dual specificity phosphatase 5 
PHTF2                 0.014   putative homeodomain transcription factor 2 isoform...
PHTF2                 0.014   putative homeodomain transcription factor 2 isoform...
PHTF2                 0.014   putative homeodomain transcription factor 2 isoform...
STAG3                 0.014   stromal antigen 3 
SEMA4A                0.014   semaphorin B 
SKI                   0.007   v-ski sarcoma viral oncogene homolog 
PARD3                 0.007   partitioning-defective protein 3 homolog 
DUSP4                 0.007   dual specificity phosphatase 4 isoform 1 
DUSP4                 0.007   dual specificity phosphatase 4 isoform 2 
ABCC12                0.007   ATP-binding cassette protein C12 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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