Guide to the Human Genome
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Name: LOC100291840 Sequence: fasta or formatted (141aa) NCBI GI: 239754214
Description:

PREDICTED: similar to leucocyte elastase inhibitor

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.9         14           3
 C cysteine            4.3          6           1
 D aspartate           5.0          7           1
 E glutamate           7.1         10           2
 F phenylalanine       2.1          3           1
 G glycine            12.1         17           2
 H histidine           7.8         11           3
 I isoleucine          1.4          2           1
 K lysine              3.5          5           1
 L leucine            12.1         17           1
 M methionine          0.7          1           1
 N asparagine          1.4          2           1
 P proline             2.1          3           1
 Q glutamine           4.3          6           1
 R arginine            5.7          8           2
 S serine              5.7          8           2
 T threonine           5.0          7           1
 V valine              8.5         12           2
 W tryptophan          1.4          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to leucocyte elastase inhibitor ... 
LOC100290109          1.000   PREDICTED: hypothetical protein XP_002346785 
LOC100288376          1.000   PREDICTED: hypothetical protein XP_002342650 
PRKCD                 0.044   protein kinase C, delta 
PRKCD                 0.044   protein kinase C, delta 
LMNB1                 0.019   lamin B1 
GTPBP10               0.019   GTP-binding protein 10 isoform 2 
ARHGEF17              0.015   Rho guanine nucleotide exchange factor (GEF) 17 [Hom...
MCPH1                 0.011   microcephalin 
TRIM33                0.011   tripartite motif-containing 33 protein isoform beta ...
TRIM33                0.011   tripartite motif-containing 33 protein isoform alpha...
DOT1L                 0.011   DOT1-like, histone H3 methyltransferase 
FOXD3                 0.011   forkhead box D3 
NR2E3                 0.007   photoreceptor-specific nuclear receptor isoform a [Ho...
NR2E3                 0.007   photoreceptor-specific nuclear receptor isoform b [Ho...
SECISBP2L             0.007   SECIS binding protein 2-like 
RSPO2                 0.007   R-spondin family, member 2 
MRGPRD                0.007   MAS-related GPR, member D 
LOC100291595          0.007   PREDICTED: hypothetical protein XP_002345793 
LOC100291431          0.007   PREDICTED: hypothetical protein XP_002346654 
LOC100289468          0.007   PREDICTED: hypothetical protein XP_002342491 
GPRASP1               0.004   G protein-coupled receptor associated sorting prote...
GPRASP1               0.004   G protein-coupled receptor associated sorting prote...
GPRASP1               0.004   G protein-coupled receptor associated sorting prote...
RTN1                  0.004   reticulon 1 isoform A 
SNW1                  0.004   SKI-interacting protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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