BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens] (93 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens] 197 2e-51 gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens] 197 2e-51 gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens] 197 2e-51 gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b pre... 102 9e-23 gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a pre... 102 9e-23 gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens] 92 7e-20 gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3 ... 90 4e-19 gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo ... 90 4e-19 gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens] 90 4e-19 gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3 h... 86 5e-18 gi|239754793 PREDICTED: similar to Small ubiquitin-related modif... 84 2e-17 gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo ... 84 2e-17 gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo ... 84 2e-17 gi|239509111 PREDICTED: similar to Small ubiquitin-related modif... 84 2e-17 gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a pre... 40 3e-04 gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a prec... 40 3e-04 gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b pre... 29 0.71 gi|118572606 hemicentin 1 [Homo sapiens] 29 0.93 gi|148536855 coatomer protein complex, subunit alpha isoform 1 [... 29 0.93 gi|148536853 coatomer protein complex, subunit alpha isoform 2 [... 29 0.93 gi|11968023 zinc finger protein 106 homolog [Homo sapiens] 26 6.0 gi|239750972 PREDICTED: hypothetical protein XP_002347620 [Homo ... 26 7.9 gi|239745378 PREDICTED: hypothetical protein XP_002343450 [Homo ... 26 7.9 gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens] 26 7.9 >gi|239754164 PREDICTED: similar to mCG21560 [Homo sapiens] Length = 93 Score = 197 bits (501), Expect = 2e-51 Identities = 93/93 (100%), Positives = 93/93 (100%) Query: 1 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND Sbjct: 1 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60 Query: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE Sbjct: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 >gi|239748701 PREDICTED: similar to mCG21560 [Homo sapiens] Length = 93 Score = 197 bits (501), Expect = 2e-51 Identities = 93/93 (100%), Positives = 93/93 (100%) Query: 1 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND Sbjct: 1 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60 Query: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE Sbjct: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 >gi|239742728 PREDICTED: similar to mCG21560 [Homo sapiens] Length = 93 Score = 197 bits (501), Expect = 2e-51 Identities = 93/93 (100%), Positives = 93/93 (100%) Query: 1 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND Sbjct: 1 MITSKASAFGGQQNEASWCCLCACLVRTWYLFCEAAAEETPVLTMADEKPKEGVKTENND 60 Query: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE Sbjct: 61 HINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 >gi|54792071 SMT3 suppressor of mif two 3 homolog 2 isoform b precursor [Homo sapiens] Length = 71 Score = 102 bits (253), Expect = 9e-23 Identities = 48/49 (97%), Positives = 48/49 (97%) Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 MADEKPKEGVKTENNDHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 49 >gi|54792069 SMT3 suppressor of mif two 3 homolog 2 isoform a precursor [Homo sapiens] Length = 95 Score = 102 bits (253), Expect = 9e-23 Identities = 48/49 (97%), Positives = 48/49 (97%) Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 MADEKPKEGVKTENNDHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE Sbjct: 1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 49 >gi|48928058 small ubiquitin-like modifier protein 3 [Homo sapiens] Length = 103 Score = 92.4 bits (228), Expect = 7e-20 Identities = 45/49 (91%), Positives = 47/49 (95%), Gaps = 1/49 (2%) Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 M++EKPKEGVKTEN DHINLKVAGQDGSV QFKIKRHTPLSKLMKAYCE Sbjct: 1 MSEEKPKEGVKTEN-DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCE 48 >gi|239748082 PREDICTED: similar to SMT3 suppressor of mif two 3 homolog 2 [Homo sapiens] Length = 206 Score = 89.7 bits (221), Expect = 4e-19 Identities = 41/49 (83%), Positives = 46/49 (93%) Query: 43 LTMADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAY 91 L +ADEKPKEG++TEN DHINLKVAGQ+GSV QF+IKRHTPLSKLMKAY Sbjct: 134 LAVADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY 182 >gi|239741979 PREDICTED: hypothetical protein XP_002342366 [Homo sapiens] Length = 164 Score = 89.7 bits (221), Expect = 4e-19 Identities = 41/49 (83%), Positives = 46/49 (93%) Query: 43 LTMADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAY 91 L +ADEKPKEG++TEN DHINLKVAGQ+GSV QF+IKRHTPLSKLMKAY Sbjct: 92 LAVADEKPKEGIETENKDHINLKVAGQEGSVVQFRIKRHTPLSKLMKAY 140 >gi|50400081 SMT3 suppressor of mif two 3 homolog 4 [Homo sapiens] Length = 95 Score = 89.7 bits (221), Expect = 4e-19 Identities = 43/49 (87%), Positives = 45/49 (91%) Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 MA+EKP E VKTENN+HINLKVAGQDGSV QFKIKR TPLSKLMKAYCE Sbjct: 1 MANEKPTEEVKTENNNHINLKVAGQDGSVVQFKIKRQTPLSKLMKAYCE 49 >gi|169169820 PREDICTED: similar to SMT3 supressor of mif two 3 homolog 2 [Homo sapiens] Length = 70 Score = 86.3 bits (212), Expect = 5e-18 Identities = 42/49 (85%), Positives = 45/49 (91%), Gaps = 1/49 (2%) Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 MAD+KP+EGVKT+NN HINLKV GQ GSV QFKIKRHTPLSKLMKAYCE Sbjct: 1 MADKKPQEGVKTKNN-HINLKVVGQGGSVVQFKIKRHTPLSKLMKAYCE 48 >gi|239754793 PREDICTED: similar to Small ubiquitin-related modifier 2 [Homo sapiens] Length = 103 Score = 84.3 bits (207), Expect = 2e-17 Identities = 39/49 (79%), Positives = 42/49 (85%) Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 MA++ EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+ Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49 >gi|239749320 PREDICTED: hypothetical protein XP_002346995 [Homo sapiens] Length = 103 Score = 84.3 bits (207), Expect = 2e-17 Identities = 39/49 (79%), Positives = 42/49 (85%) Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 MA++ EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+ Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49 >gi|239743410 PREDICTED: hypothetical protein XP_002342830 [Homo sapiens] Length = 103 Score = 84.3 bits (207), Expect = 2e-17 Identities = 39/49 (79%), Positives = 42/49 (85%) Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 MA++ EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+ Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49 >gi|239509111 PREDICTED: similar to Small ubiquitin-related modifier 2 [Homo sapiens] Length = 103 Score = 84.3 bits (207), Expect = 2e-17 Identities = 39/49 (79%), Positives = 42/49 (85%) Query: 45 MADEKPKEGVKTENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 MA++ EGVKTENNDHINLKV GQD SV QFKIKRHTPLSKLM AYC+ Sbjct: 1 MANKNSNEGVKTENNDHINLKVVGQDDSVVQFKIKRHTPLSKLMNAYCD 49 >gi|54792065 SMT3 suppressor of mif two 3 homolog 1 isoform a precursor [Homo sapiens] Length = 101 Score = 40.4 bits (93), Expect = 3e-04 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%) Query: 45 MADEKPKEGVKT----ENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 M+D++ K + + ++I LKV GQD S FK+K T L KL ++YC+ Sbjct: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQ 53 >gi|4507801 SMT3 suppressor of mif two 3 homolog 1 isoform a precursor [Homo sapiens] Length = 101 Score = 40.4 bits (93), Expect = 3e-04 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 4/53 (7%) Query: 45 MADEKPKEGVKT----ENNDHINLKVAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 M+D++ K + + ++I LKV GQD S FK+K T L KL ++YC+ Sbjct: 1 MSDQEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQ 53 >gi|54792067 SMT3 suppressor of mif two 3 homolog 1 isoform b precursor [Homo sapiens] Length = 76 Score = 29.3 bits (64), Expect = 0.71 Identities = 12/28 (42%), Positives = 18/28 (64%) Query: 66 VAGQDGSVAQFKIKRHTPLSKLMKAYCE 93 ++ QD S FK+K T L KL ++YC+ Sbjct: 1 MSDQDSSEIHFKVKMTTHLKKLKESYCQ 28 >gi|118572606 hemicentin 1 [Homo sapiens] Length = 5635 Score = 28.9 bits (63), Expect = 0.93 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%) Query: 31 LFCEAAAEETPVLTMADEKPKEGVKTENNDHINLKVAGQ 69 L C+AA +P+LT K+GV + ND+I ++ G+ Sbjct: 1661 LECKAAGNPSPILTWL----KDGVPVKANDNIRIEAGGK 1695 >gi|148536855 coatomer protein complex, subunit alpha isoform 1 [Homo sapiens] Length = 1233 Score = 28.9 bits (63), Expect = 0.93 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 11/48 (22%) Query: 47 DEKPKEGVKTENNDH-----------INLKVAGQDGSVAQFKIKRHTP 83 D + GV+T DH +NL AG DG + FK++R P Sbjct: 277 DMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLERERP 324 >gi|148536853 coatomer protein complex, subunit alpha isoform 2 [Homo sapiens] Length = 1224 Score = 28.9 bits (63), Expect = 0.93 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 11/48 (22%) Query: 47 DEKPKEGVKTENNDH-----------INLKVAGQDGSVAQFKIKRHTP 83 D + GV+T DH +NL AG DG + FK++R P Sbjct: 277 DMSKRTGVQTFRRDHDRFWVLAAHPNLNLFAAGHDGGMIVFKLERERP 324 >gi|11968023 zinc finger protein 106 homolog [Homo sapiens] Length = 1883 Score = 26.2 bits (56), Expect = 6.0 Identities = 13/32 (40%), Positives = 19/32 (59%) Query: 52 EGVKTENNDHINLKVAGQDGSVAQFKIKRHTP 83 E T+ D KV+G++GS A+ K +R TP Sbjct: 320 ESQTTKQADTATSKVSGKNGSAAREKPRRWTP 351 >gi|239750972 PREDICTED: hypothetical protein XP_002347620 [Homo sapiens] Length = 259 Score = 25.8 bits (55), Expect = 7.9 Identities = 9/34 (26%), Positives = 14/34 (41%) Query: 17 SWCCLCACLVRTWYLFCEAAAEETPVLTMADEKP 50 +WC +C W C A A++ + A P Sbjct: 102 AWCTICCTTFMMWLSTCRATAQQERLCQGASPPP 135 >gi|239745378 PREDICTED: hypothetical protein XP_002343450 [Homo sapiens] Length = 259 Score = 25.8 bits (55), Expect = 7.9 Identities = 9/34 (26%), Positives = 14/34 (41%) Query: 17 SWCCLCACLVRTWYLFCEAAAEETPVLTMADEKP 50 +WC +C W C A A++ + A P Sbjct: 102 AWCTICCTTFMMWLSTCRATAQQERLCQGASPPP 135 >gi|23111062 splicing factor, arginine/serine-rich 8 [Homo sapiens] Length = 951 Score = 25.8 bits (55), Expect = 7.9 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 11/68 (16%) Query: 29 WYLFCEAAAEETPVLTMA----DEKPKEGVKTENNDHINLKVAGQDGSV---AQFKIKRH 81 +Y F + A +E +A DEK K GV ++N D + +DG+ + F K+ Sbjct: 252 YYKFIQKAMKEGRYTVLAENKSDEKKKSGVSSDNEDDDD----EEDGNYLHPSLFASKKC 307 Query: 82 TPLSKLMK 89 L +LMK Sbjct: 308 NRLEELMK 315 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.318 0.129 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,408,662 Number of Sequences: 37866 Number of extensions: 122221 Number of successful extensions: 338 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 313 Number of HSP's gapped (non-prelim): 25 length of query: 93 length of database: 18,247,518 effective HSP length: 64 effective length of query: 29 effective length of database: 15,824,094 effective search space: 458898726 effective search space used: 458898726 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.