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Search of human proteins with 239753643
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753643 PREDICTED: similar to Putative uncharacterized
protein C3orf46 [Homo sapiens]
(149 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753643 PREDICTED: similar to Putative uncharacterized prot... 303 4e-83
gi|27477134 nucleoporin 210 [Homo sapiens] 148 1e-36
gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens] 84 3e-17
gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens] 84 3e-17
gi|210032580 SET domain containing 1B [Homo sapiens] 32 0.26
gi|21493039 A-kinase anchor protein 4 isoform 2 [Homo sapiens] 29 1.7
gi|21493037 A-kinase anchor protein 4 isoform 1 [Homo sapiens] 29 1.7
gi|126116581 retina and anterior neural fold homeobox [Homo sapi... 28 2.2
gi|50428935 BPY2 interacting protein 1 [Homo sapiens] 28 2.9
gi|189011568 adenomatous polyposis coli [Homo sapiens] 28 3.7
gi|189011566 adenomatous polyposis coli [Homo sapiens] 28 3.7
gi|53759122 adenomatous polyposis coli [Homo sapiens] 28 3.7
gi|57863314 vacuolar protein sorting 37C [Homo sapiens] 27 4.9
gi|150010552 FK506 binding protein 15, 133kDa [Homo sapiens] 27 4.9
gi|209862845 nuclear factor of activated T-cells, cytoplasmic, c... 27 6.4
gi|27886563 nuclear factor of activated T-cells, cytoplasmic, ca... 27 6.4
gi|122937289 kinesin family member 18B [Homo sapiens] 27 8.3
>gi|239753643 PREDICTED: similar to Putative uncharacterized protein
C3orf46 [Homo sapiens]
Length = 149
Score = 303 bits (776), Expect = 4e-83
Identities = 149/149 (100%), Positives = 149/149 (100%)
Query: 1 MGKGTVSGLVQVVDAETGKVVIISQDLVQVKVLLLGAVRIRSPIMQIRMGTQLGKNWIHL 60
MGKGTVSGLVQVVDAETGKVVIISQDLVQVKVLLLGAVRIRSPIMQIRMGTQLGKNWIHL
Sbjct: 1 MGKGTVSGLVQVVDAETGKVVIISQDLVQVKVLLLGAVRIRSPIMQIRMGTQLGKNWIHL 60
Query: 61 PLLEGGSTASGGIPSAGTPLVTRPDFSPPMSIYITWITNHQNPFSFGNAMPGLTFHWSVT 120
PLLEGGSTASGGIPSAGTPLVTRPDFSPPMSIYITWITNHQNPFSFGNAMPGLTFHWSVT
Sbjct: 61 PLLEGGSTASGGIPSAGTPLVTRPDFSPPMSIYITWITNHQNPFSFGNAMPGLTFHWSVT 120
Query: 121 KRDILDLQGQHHKSSSEACGAGAAGAAAC 149
KRDILDLQGQHHKSSSEACGAGAAGAAAC
Sbjct: 121 KRDILDLQGQHHKSSSEACGAGAAGAAAC 149
>gi|27477134 nucleoporin 210 [Homo sapiens]
Length = 1887
Score = 148 bits (374), Expect = 1e-36
Identities = 80/135 (59%), Positives = 92/135 (68%), Gaps = 37/135 (27%)
Query: 1 MGKGTVSGLVQVVDAETGKVVIISQDLVQVKVLLLGAVRIRSPIMQIRMGTQLGKNWIHL 60
+G GTVSGLVQ VDAETGKVVIISQDLVQV+VLLL AVRIR+PIM++R GTQ
Sbjct: 1133 IGNGTVSGLVQAVDAETGKVVIISQDLVQVEVLLLRAVRIRAPIMRMRTGTQ-------- 1184
Query: 61 PLLEGGSTASGGIPSAGTPLVTRPDFSPPMSIYITWITNHQNPFSFGNAMPGLTFHWSVT 120
M IY+T ITNHQNPFSFGNA+PGLTFHWSVT
Sbjct: 1185 -----------------------------MPIYVTGITNHQNPFSFGNAVPGLTFHWSVT 1215
Query: 121 KRDILDLQGQHHKSS 135
KRD+LDL+G+HH++S
Sbjct: 1216 KRDVLDLRGRHHEAS 1230
>gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens]
Length = 1736
Score = 84.3 bits (207), Expect = 3e-17
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 37/131 (28%)
Query: 1 MGKGTVSGLVQVVDAETGKVVIISQDLVQVKVLLLGAVRIRSPIMQIRMGTQLGKNWIHL 60
+G V G +Q V+ +TGKV++ SQD VQ++V+ L AVRI +
Sbjct: 1137 VGTAVVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILA------------------ 1178
Query: 61 PLLEGGSTASGGIPSAGTPLVTRPDFSPPMSIYITWITNHQNPFSFGNAMPGLTFHWSVT 120
A T L+T + M +Y+ +T+ Q PFSF NA PGLTFHWS++
Sbjct: 1179 ---------------AATRLIT----ATKMPVYVMGVTSTQTPFSFSNANPGLTFHWSMS 1219
Query: 121 KRDILDLQGQH 131
KRD+LDL +H
Sbjct: 1220 KRDVLDLVPRH 1230
>gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens]
Length = 1888
Score = 84.3 bits (207), Expect = 3e-17
Identities = 49/131 (37%), Positives = 69/131 (52%), Gaps = 37/131 (28%)
Query: 1 MGKGTVSGLVQVVDAETGKVVIISQDLVQVKVLLLGAVRIRSPIMQIRMGTQLGKNWIHL 60
+G V G +Q V+ +TGKV++ SQD VQ++V+ L AVRI +
Sbjct: 1137 VGTAVVHGTIQTVNEDTGKVIVFSQDEVQIEVVQLRAVRILA------------------ 1178
Query: 61 PLLEGGSTASGGIPSAGTPLVTRPDFSPPMSIYITWITNHQNPFSFGNAMPGLTFHWSVT 120
A T L+T + M +Y+ +T+ Q PFSF NA PGLTFHWS++
Sbjct: 1179 ---------------AATRLIT----ATKMPVYVMGVTSTQTPFSFSNANPGLTFHWSMS 1219
Query: 121 KRDILDLQGQH 131
KRD+LDL +H
Sbjct: 1220 KRDVLDLVPRH 1230
>gi|210032580 SET domain containing 1B [Homo sapiens]
Length = 1923
Score = 31.6 bits (70), Expect = 0.26
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 10/83 (12%)
Query: 43 PIMQIRMGTQLGKNWIHLPL--------LEGGSTASGGIPSAGTPLVTRPDFSPPMSIYI 94
P+MQ+ M LG W +P+ L T G P P + + +
Sbjct: 754 PVMQVDMSHVLGGQWGGMPMSFQMQTQVLSRLMTGQGACPYP--PFMAAAAAAASAGLQF 811
Query: 95 TWITNHQNPFSFGNAMPGLTFHW 117
+ ++ PFS N+ PG HW
Sbjct: 812 VNLPPYRGPFSLSNSGPGRGQHW 834
>gi|21493039 A-kinase anchor protein 4 isoform 2 [Homo sapiens]
Length = 845
Score = 28.9 bits (63), Expect = 1.7
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 87 SPPMSIYITWITNHQNPFSFGNAMPGLTFHWSVTKRDILDLQGQHHKSSSEAC 139
S P+S+ + W+ + ++ G L+ S K + D +G++H++SSE C
Sbjct: 96 SDPVSV-LNWLLSDLQKYALG-FQHALSPSTSTCKHKVGDTEGEYHRASSENC 146
>gi|21493037 A-kinase anchor protein 4 isoform 1 [Homo sapiens]
Length = 854
Score = 28.9 bits (63), Expect = 1.7
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 87 SPPMSIYITWITNHQNPFSFGNAMPGLTFHWSVTKRDILDLQGQHHKSSSEAC 139
S P+S+ + W+ + ++ G L+ S K + D +G++H++SSE C
Sbjct: 105 SDPVSV-LNWLLSDLQKYALG-FQHALSPSTSTCKHKVGDTEGEYHRASSENC 155
>gi|126116581 retina and anterior neural fold homeobox [Homo
sapiens]
Length = 346
Score = 28.5 bits (62), Expect = 2.2
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 55 KNWIHLPLLEGGSTASGGIPSAGTPLVTRP-DFSPP 89
++W+ PL GG+TA +P G P + P ++PP
Sbjct: 242 ESWLGPPLPGGGATALQSLPGFGPPAQSLPASYTPP 277
>gi|50428935 BPY2 interacting protein 1 [Homo sapiens]
Length = 1059
Score = 28.1 bits (61), Expect = 2.9
Identities = 19/78 (24%), Positives = 29/78 (37%)
Query: 7 SGLVQVVDAETGKVVIISQDLVQVKVLLLGAVRIRSPIMQIRMGTQLGKNWIHLPLLEGG 66
S LV E G + + +++ + R R+P + G + L L GG
Sbjct: 603 SQLVATPSLELGPIPAGEEKALELPLAASSIPRPRTPSPESHRSPAEGSERLSLSPLRGG 662
Query: 67 STASGGIPSAGTPLVTRP 84
P+ TP VT P
Sbjct: 663 EAGPDASPTVTTPTVTTP 680
>gi|189011568 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 27.7 bits (60), Expect = 3.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 31 KVLLLGAVRIRSPIM-QIRMGTQL-------GKNWIHLPLLEGGSTASGGIPSAGTPLVT 82
K L+ G VR S I Q++ Q G+ IH+P + S+++ + G PL T
Sbjct: 2196 KSLITGKVRSNSEISGQMKQPLQANMPSISRGRTMIHIPGVRNSSSSTSPVSKKGPPLKT 2255
Query: 83 RPDFSP 88
SP
Sbjct: 2256 PASKSP 2261
>gi|189011566 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 27.7 bits (60), Expect = 3.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 31 KVLLLGAVRIRSPIM-QIRMGTQL-------GKNWIHLPLLEGGSTASGGIPSAGTPLVT 82
K L+ G VR S I Q++ Q G+ IH+P + S+++ + G PL T
Sbjct: 2196 KSLITGKVRSNSEISGQMKQPLQANMPSISRGRTMIHIPGVRNSSSSTSPVSKKGPPLKT 2255
Query: 83 RPDFSP 88
SP
Sbjct: 2256 PASKSP 2261
>gi|53759122 adenomatous polyposis coli [Homo sapiens]
Length = 2843
Score = 27.7 bits (60), Expect = 3.7
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 31 KVLLLGAVRIRSPIM-QIRMGTQL-------GKNWIHLPLLEGGSTASGGIPSAGTPLVT 82
K L+ G VR S I Q++ Q G+ IH+P + S+++ + G PL T
Sbjct: 2196 KSLITGKVRSNSEISGQMKQPLQANMPSISRGRTMIHIPGVRNSSSSTSPVSKKGPPLKT 2255
Query: 83 RPDFSP 88
SP
Sbjct: 2256 PASKSP 2261
>gi|57863314 vacuolar protein sorting 37C [Homo sapiens]
Length = 355
Score = 27.3 bits (59), Expect = 4.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 61 PLLEGGSTASGGIPSAGTPLVTRPDF 86
P L G TA G +P A P+V++P F
Sbjct: 211 PSLPVGPTAHGALPPAPFPVVSQPSF 236
>gi|150010552 FK506 binding protein 15, 133kDa [Homo sapiens]
Length = 1219
Score = 27.3 bits (59), Expect = 4.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 102 NPFSFGNAMPGLTFHWSVTKRDILDLQGQHHKSSSEACGAGAAGAA 147
+P + G PG + K D+ G H + SS G+ AGAA
Sbjct: 1106 DPLALGPESPGEPQPPQLKKDDVTSSTGPHKELSSTEAGSTVAGAA 1151
>gi|209862845 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 1 [Homo sapiens]
Length = 964
Score = 26.9 bits (58), Expect = 6.4
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 17/95 (17%)
Query: 28 VQVKVLLLGAVRIRSPIMQIRMGTQLGKNWIHLPLLEGGSTASGGIPSAG-TPLVTRPDF 86
VQV + R RSP R + K PL + ++ G PSA TP T DF
Sbjct: 725 VQVYFYVSNGRRKRSPTQSFRFLPVICKEE---PLPD---SSLRGFPSASATPFGTDMDF 778
Query: 87 SPPMSIYITWITNHQNPF--------SFGNAMPGL 113
SPP Y ++ H++P FG MP L
Sbjct: 779 SPPRPPYPSY--PHEDPACETPYLSEGFGYGMPPL 811
>gi|27886563 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 4 isoform 2 [Homo sapiens]
Length = 902
Score = 26.9 bits (58), Expect = 6.4
Identities = 31/95 (32%), Positives = 40/95 (42%), Gaps = 17/95 (17%)
Query: 28 VQVKVLLLGAVRIRSPIMQIRMGTQLGKNWIHLPLLEGGSTASGGIPSAG-TPLVTRPDF 86
VQV + R RSP R + K PL + ++ G PSA TP T DF
Sbjct: 662 VQVYFYVSNGRRKRSPTQSFRFLPVICKEE---PLPD---SSLRGFPSASATPFGTDMDF 715
Query: 87 SPPMSIYITWITNHQNPF--------SFGNAMPGL 113
SPP Y ++ H++P FG MP L
Sbjct: 716 SPPRPPYPSY--PHEDPACETPYLSEGFGYGMPPL 748
>gi|122937289 kinesin family member 18B [Homo sapiens]
Length = 855
Score = 26.6 bits (57), Expect = 8.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 110 MPGLTFHWSVTKRDILDLQGQHHKSSSEACG 140
+PGLT V K ++DL G SS+ A G
Sbjct: 238 VPGLTQAVQVAKMSLIDLAGSERASSTHAKG 268
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,746,112
Number of Sequences: 37866
Number of extensions: 253781
Number of successful extensions: 723
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 708
Number of HSP's gapped (non-prelim): 18
length of query: 149
length of database: 18,247,518
effective HSP length: 93
effective length of query: 56
effective length of database: 14,725,980
effective search space: 824654880
effective search space used: 824654880
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.