Search of human proteins with 239752758

Search of human proteins with 239752758

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752758 PREDICTED: similar to heat shock 10kDa protein 1
[Homo sapiens]
         (102 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752758 PREDICTED: similar to heat shock 10kDa protein 1 [H...   205   7e-54
gi|4504523 heat shock 10kDa protein 1 [Homo sapiens]                  172   4e-44
gi|169210012 PREDICTED: similar to heat shock 10 kDa protein 1 [...   164   2e-41
gi|239753444 PREDICTED: similar to heat shock 10kDa protein 1 [H...   144   1e-35
gi|239741907 PREDICTED: hypothetical protein XP_002342349 [Homo ...   144   1e-35
gi|239748009 PREDICTED: hypothetical protein XP_002346492 [Homo ...   142   4e-35
gi|112734870 hypothetical protein LOC57648 [Homo sapiens]              30   0.53 
gi|28269693 xylosyltransferase I [Homo sapiens]                        27   2.7  
gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]              27   3.5  
gi|47834348 minor histocompatibility antigen HA-1 [Homo sapiens]       26   5.9  
gi|52630419 sterol regulatory element binding transcription fact...    26   7.7  
gi|22547195 sterol regulatory element binding transcription fact...    26   7.7  
gi|21361716 Golgi phosphoprotein 3-like [Homo sapiens]                 26   7.7  
gi|239755172 PREDICTED: hypothetical protein [Homo sapiens]            26   7.7  

>gi|239752758 PREDICTED: similar to heat shock 10kDa protein 1 [Homo
           sapiens]
          Length = 102

 Score =  205 bits (521), Expect = 7e-54
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MAGQTFRKFLPLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGEG 60
           MAGQTFRKFLPLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGEG
Sbjct: 1   MAGQTFRKFLPLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGEG 60

Query: 61  QPVSRKVGDKVLLPQYGGTKVVLDDKDYFLFRDGDILGKHVE 102
           QPVSRKVGDKVLLPQYGGTKVVLDDKDYFLFRDGDILGKHVE
Sbjct: 61  QPVSRKVGDKVLLPQYGGTKVVLDDKDYFLFRDGDILGKHVE 102


>gi|4504523 heat shock 10kDa protein 1 [Homo sapiens]
          Length = 102

 Score =  172 bits (437), Expect = 4e-44
 Identities = 88/102 (86%), Positives = 92/102 (90%)

Query: 1   MAGQTFRKFLPLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGEG 60
           MAGQ FRKFLPL  +   ERS AETVTKGGIMLPEKSQGKV QATVVAVGSGSKGKGGE 
Sbjct: 1   MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEI 60

Query: 61  QPVSRKVGDKVLLPQYGGTKVVLDDKDYFLFRDGDILGKHVE 102
           QPVS KVGDKVLLP+YGGTKVVLDDKDYFLFRDGDILGK+V+
Sbjct: 61  QPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102


>gi|169210012 PREDICTED: similar to heat shock 10 kDa protein 1
           [Homo sapiens]
          Length = 103

 Score =  164 bits (414), Expect = 2e-41
 Identities = 84/103 (81%), Positives = 92/103 (89%), Gaps = 1/103 (0%)

Query: 1   MAGQTFRK-FLPLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGE 59
           MAGQ FRK FLPL ++   ERS AETVT+GGIMLPEKSQGKV QA VVAVGSGSKGKGGE
Sbjct: 1   MAGQAFRKKFLPLFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGE 60

Query: 60  GQPVSRKVGDKVLLPQYGGTKVVLDDKDYFLFRDGDILGKHVE 102
            QPVS KVGDKVLLP++GGTKV+LDDKDYFLFRDGDILGK+V+
Sbjct: 61  IQPVSMKVGDKVLLPEHGGTKVILDDKDYFLFRDGDILGKYVD 103


>gi|239753444 PREDICTED: similar to heat shock 10kDa protein 1 [Homo
           sapiens]
          Length = 175

 Score =  144 bits (363), Expect = 1e-35
 Identities = 76/100 (76%), Positives = 80/100 (80%)

Query: 1   MAGQTFRKFLPLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGEG 60
           MAGQ FRKFL L  +   ER    TVTKGGIMLPEKSQGKV QA  VAVGSGSKGKGGE 
Sbjct: 1   MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60

Query: 61  QPVSRKVGDKVLLPQYGGTKVVLDDKDYFLFRDGDILGKH 100
           QPVS +VGDK LL +YGGT+VVLDDKDYFLFRDGDIL  H
Sbjct: 61  QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGH 100


>gi|239741907 PREDICTED: hypothetical protein XP_002342349 [Homo
           sapiens]
          Length = 175

 Score =  144 bits (363), Expect = 1e-35
 Identities = 76/100 (76%), Positives = 80/100 (80%)

Query: 1   MAGQTFRKFLPLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGEG 60
           MAGQ FRKFL L  +   ER    TVTKGGIMLPEKSQGKV QA  VAVGSGSKGKGGE 
Sbjct: 1   MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60

Query: 61  QPVSRKVGDKVLLPQYGGTKVVLDDKDYFLFRDGDILGKH 100
           QPVS +VGDK LL +YGGT+VVLDDKDYFLFRDGDIL  H
Sbjct: 61  QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDILTGH 100


>gi|239748009 PREDICTED: hypothetical protein XP_002346492 [Homo
          sapiens]
          Length = 244

 Score =  142 bits (359), Expect = 4e-35
 Identities = 75/97 (77%), Positives = 79/97 (81%)

Query: 1  MAGQTFRKFLPLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGEG 60
          MAGQ FRKFL L  +   ER    TVTKGGIMLPEKSQGKV QA  VAVGSGSKGKGGE 
Sbjct: 1  MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60

Query: 61 QPVSRKVGDKVLLPQYGGTKVVLDDKDYFLFRDGDIL 97
          QPVS +VGDK LL +YGGT+VVLDDKDYFLFRDGDIL
Sbjct: 61 QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDIL 97


>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
          Length = 1094

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 45  TVVAVGSGSKGKGG-EGQPVSRKVGDKVLLPQYGGT 79
           T+V+ GS    KGG EGQP S    + V+ P  GG+
Sbjct: 424 TIVSDGSTLSSKGGSEGQPESSTASNSVVPPPQGGS 459


>gi|28269693 xylosyltransferase I [Homo sapiens]
          Length = 959

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 17/58 (29%), Positives = 24/58 (41%)

Query: 11  PLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGEGQPVSRKVG 68
           P R+K   +R + +     G   P K  G+V      A  + S GK     P +RK G
Sbjct: 186 PSRQKELLKRKLEQQEKGKGHTFPGKGPGEVLPPGDRAAANSSHGKDVSRPPHARKTG 243


>gi|63252863 BTB (POZ) domain containing 12 [Homo sapiens]
          Length = 1834

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 11   PLRKKRKFERSVAETVTKGGIMLPEKS 37
            P  +K K  RSV E   KG +M PEKS
Sbjct: 1095 PGHQKGKERRSVLECRNKGVLMFPEKS 1121


>gi|47834348 minor histocompatibility antigen HA-1 [Homo sapiens]
          Length = 1136

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 14  KKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSK--------GKGGEGQPVSR 65
           +K++FE+++          + E   G+V  +T++AV  G          G G EG P S 
Sbjct: 199 EKQEFEKALETIAVAFSSTVSEFLMGEVDSSTLLAVPPGDSSQSMESLYGPGSEGTPPSL 258

Query: 66  KVGDKVLLP 74
           +  D   LP
Sbjct: 259 EDCDAGCLP 267


>gi|52630419 sterol regulatory element binding transcription factor
           1 isoform a [Homo sapiens]
          Length = 1177

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 34  PEKSQGKVFQATVVAVGSGSKGKGGEG 60
           P    G  FQ++ +++GS   G GG G
Sbjct: 458 PPSDAGSPFQSSPLSLGSRGSGSGGSG 484


>gi|22547195 sterol regulatory element binding transcription factor
           1 isoform b [Homo sapiens]
          Length = 1147

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 34  PEKSQGKVFQATVVAVGSGSKGKGGEG 60
           P    G  FQ++ +++GS   G GG G
Sbjct: 428 PPSDAGSPFQSSPLSLGSRGSGSGGSG 454


>gi|21361716 Golgi phosphoprotein 3-like [Homo sapiens]
          Length = 285

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 1   MAGQTFRKFLPLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGEG 60
           + G+T+  F    + R     +A+ + + GI+  EK    +F  T   V + +     E 
Sbjct: 142 LTGETWNPFKLQYQLRNVRERIAKNLVEKGILTTEKQNFLLFDMTTHPVTNTT-----EK 196

Query: 61  QPVSRKVGDKVL 72
           Q + +K+ D VL
Sbjct: 197 QRLVKKLQDSVL 208


>gi|239755172 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 265

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 2/52 (3%)

Query: 52  GSKGKGG--EGQPVSRKVGDKVLLPQYGGTKVVLDDKDYFLFRDGDILGKHV 101
           G  G GG   G+   R VGD +LL Q GG +     +   L R   +LG HV
Sbjct: 31  GEPGLGGVRSGRGPHRHVGDPLLLYQLGGVESNAALERLRLDRRVCMLGHHV 82


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.139    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,933,118
Number of Sequences: 37866
Number of extensions: 171870
Number of successful extensions: 490
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 16
length of query: 102
length of database: 18,247,518
effective HSP length: 73
effective length of query: 29
effective length of database: 15,483,300
effective search space: 449015700
effective search space used: 449015700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.