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Search of human proteins with 239752017
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752017 PREDICTED: hypothetical protein XP_002348069 [Homo
sapiens]
(363 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752017 PREDICTED: hypothetical protein XP_002348069 [Homo ... 780 0.0
gi|239757500 PREDICTED: hypothetical protein [Homo sapiens] 637 0.0
gi|145309328 papilin [Homo sapiens] 33 0.40
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 31 2.0
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 30 3.4
gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens] 30 3.4
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens] 29 7.5
gi|169212963 PREDICTED: hypothetical protein [Homo sapiens] 29 7.5
gi|169213148 PREDICTED: hypothetical protein [Homo sapiens] 29 7.5
gi|169212812 PREDICTED: hypothetical protein [Homo sapiens] 29 7.5
gi|195927059 axin 2 [Homo sapiens] 29 7.5
gi|47551356 hypothetical protein LOC408029 [Homo sapiens] 28 9.8
gi|47524184 hypothetical protein LOC29798 [Homo sapiens] 28 9.8
gi|197304777 TBC1 domain family, member 5 isoform a [Homo sapiens] 28 9.8
gi|197304775 TBC1 domain family, member 5 isoform b [Homo sapiens] 28 9.8
gi|7661998 TBC1 domain family, member 5 isoform b [Homo sapiens] 28 9.8
gi|190014607 netrin G2 [Homo sapiens] 28 9.8
>gi|239752017 PREDICTED: hypothetical protein XP_002348069 [Homo
sapiens]
Length = 363
Score = 780 bits (2015), Expect = 0.0
Identities = 363/363 (100%), Positives = 363/363 (100%)
Query: 1 MELSSFCALPCHLPERNGSCSCWKGQESEWGDTSGAPDKVGQPLGQATCAGLLDVEGSGE 60
MELSSFCALPCHLPERNGSCSCWKGQESEWGDTSGAPDKVGQPLGQATCAGLLDVEGSGE
Sbjct: 1 MELSSFCALPCHLPERNGSCSCWKGQESEWGDTSGAPDKVGQPLGQATCAGLLDVEGSGE 60
Query: 61 EIVEGAVAHGHHSAREADHVVGHAEVRCRQVHQQRLRVEPHKVVRAIRDWEPGAVEEGTL 120
EIVEGAVAHGHHSAREADHVVGHAEVRCRQVHQQRLRVEPHKVVRAIRDWEPGAVEEGTL
Sbjct: 61 EIVEGAVAHGHHSAREADHVVGHAEVRCRQVHQQRLRVEPHKVVRAIRDWEPGAVEEGTL 120
Query: 121 FPVHWLGCYHAGHKGAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYGVQQQHR 180
FPVHWLGCYHAGHKGAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYGVQQQHR
Sbjct: 121 FPVHWLGCYHAGHKGAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYGVQQQHR 180
Query: 181 EGPVWVGVVQQCAQLPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKGPKVCTHSVTV 240
EGPVWVGVVQQCAQLPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKGPKVCTHSVTV
Sbjct: 181 EGPVWVGVVQQCAQLPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKGPKVCTHSVTV 240
Query: 241 SWNQTHSSAPDGACRKGGPQYRVLQKPCVNDRSRALTSFPLKLRIPARAELECGGYVPGR 300
SWNQTHSSAPDGACRKGGPQYRVLQKPCVNDRSRALTSFPLKLRIPARAELECGGYVPGR
Sbjct: 241 SWNQTHSSAPDGACRKGGPQYRVLQKPCVNDRSRALTSFPLKLRIPARAELECGGYVPGR 300
Query: 301 QRGDDKFLPQAVAWGFCKAPAAGPQEQQDEQSKRHSRRHACGYFRLPSGARPHEKPVSNK 360
QRGDDKFLPQAVAWGFCKAPAAGPQEQQDEQSKRHSRRHACGYFRLPSGARPHEKPVSNK
Sbjct: 301 QRGDDKFLPQAVAWGFCKAPAAGPQEQQDEQSKRHSRRHACGYFRLPSGARPHEKPVSNK 360
Query: 361 KGV 363
KGV
Sbjct: 361 KGV 363
>gi|239757500 PREDICTED: hypothetical protein [Homo sapiens]
Length = 407
Score = 637 bits (1643), Expect = 0.0
Identities = 315/387 (81%), Positives = 320/387 (82%), Gaps = 42/387 (10%)
Query: 15 ERNGSCSCWKGQESEWGDTSGAPDKVGQPLGQATCAGLLDVEGSGEEIVEGAVAHGHHSA 74
ERNGSCSCWKGQESEWGDTSGAPDKVGQPLGQATCAGLLDVEGSGEEIVEGAVAHGHHSA
Sbjct: 25 ERNGSCSCWKGQESEWGDTSGAPDKVGQPLGQATCAGLLDVEGSGEEIVEGAVAHGHHSA 84
Query: 75 READHVVGHAEVRCRQVHQQRLRVEPHKVVRAIRDWEPGAVEEGTLFPVHWLGCYHAGHK 134
READHVVGHAEVRCRQVHQQRLRVEPHKVVRAIRDWEPGAVEEGTLFPVHWLGCYHAGHK
Sbjct: 85 READHVVGHAEVRCRQVHQQRLRVEPHKVVRAIRDWEPGAVEEGTLFPVHWLGCYHAGHK 144
Query: 135 GAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYGVQQQHREGPVWVGVVQQCAQ 194
GAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYGVQQQHREGPVWVGVVQQCAQ
Sbjct: 145 GAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYGVQQQHREGPVWVGVVQQCAQ 204
Query: 195 LPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKGPKVCTHSVTVSWNQTHSSAPDGAC 254
LPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKG V +W + AC
Sbjct: 205 LPLLQPIATHVPLGMQEGHWGGLCVKKYQQLTAAKG----AAPVENTWRSAAPGLWERAC 260
Query: 255 RKG-GPQYRVLQKPCVND-------------------------------------RSRAL 276
G + +V P + RSRAL
Sbjct: 261 NGTLGKREQVSDDPHLVGVHTQDPELYPGIRPRPQSLPSSHGRPASRHYGNLSLVRSRAL 320
Query: 277 TSFPLKLRIPARAELECGGYVPGRQRGDDKFLPQAVAWGFCKAPAAGPQEQQDEQSKRHS 336
TSFPLKLRIPARAELECGGYVPGRQRGDDKFLPQAVAWGFCKAPAAGPQEQQDEQSKRHS
Sbjct: 321 TSFPLKLRIPARAELECGGYVPGRQRGDDKFLPQAVAWGFCKAPAAGPQEQQDEQSKRHS 380
Query: 337 RRHACGYFRLPSGARPHEKPVSNKKGV 363
RRHACGYFRLPSGARPHEKPVSNKKGV
Sbjct: 381 RRHACGYFRLPSGARPHEKPVSNKKGV 407
>gi|145309328 papilin [Homo sapiens]
Length = 1251
Score = 33.1 bits (74), Expect = 0.40
Identities = 37/137 (27%), Positives = 51/137 (37%), Gaps = 22/137 (16%)
Query: 222 YQQ-LTAAKGPKVCTHSVTVSWNQTHSSAPDGACRKGGPQYRVLQ-KPCVNDRSRALTSF 279
YQQ L + GP C HS H PDG GPQ++ PC R
Sbjct: 590 YQQPLRSGSGPHDCRHS-------PHGCCPDGHTASLGPQWQGCPGAPCQQSRYGCC--- 639
Query: 280 PLKLRIPARAELECGGYVPG--RQRGDDKF--LPQAVAWGFCKAPAAGPQEQQDEQSKRH 335
P R + G + G + G D +P++ A PQ QQ+E S+
Sbjct: 640 ------PDRVSVAEGPHHAGCTKSYGGDSTGGMPRSRAVASTVHNTHQPQAQQNEPSECR 693
Query: 336 SRRHACGYFRLPSGARP 352
+ C Y + + A P
Sbjct: 694 GSQFGCCYDNVATAAGP 710
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 30.8 bits (68), Expect = 2.0
Identities = 16/38 (42%), Positives = 20/38 (52%)
Query: 319 APAAGPQEQQDEQSKRHSRRHACGYFRLPSGARPHEKP 356
+P P++QQ S+R SRR G R PS R E P
Sbjct: 2702 SPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETP 2739
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 30.0 bits (66), Expect = 3.4
Identities = 36/117 (30%), Positives = 45/117 (38%), Gaps = 18/117 (15%)
Query: 251 DGACRKGGPQYRVLQKPCVNDRSRALTSFPLKLRI----PARAEL-ECGGYVPGRQRGDD 305
DG CR+GGP R R + LTS L ++ RA L C G + GR
Sbjct: 259 DGHCREGGPAPR----GACEGRPKHLTSCLLNTKVLNGEMGRAALASCAGGMLGRPG--- 311
Query: 306 KFLPQAVAWGFCKAPAAGPQEQQDEQSKRHSRRHACGYFRLPSGARPHEKPVSNKKG 362
V G C AAGP E S+ RR + +G P P+S G
Sbjct: 312 ---TGVVTSGRCAKEAAGPPEPGPAFSECLERRQMLHHTASYAGPPP---PLSTAAG 362
>gi|56788370 pleckstrin and Sec7 domain containing 4 [Homo sapiens]
Length = 1056
Score = 30.0 bits (66), Expect = 3.4
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Query: 6 FCALPCHLPERNGSCSCWKGQESEWGDTSG--APDKVGQPLGQATCAGLLDVEGSGEEIV 63
F A PC +G C W +S G +G +P + PL + T L+ E ++
Sbjct: 251 FLASPCSENSASGECFSWGASDSHAGVRTGPESPATLEPPLPEDTVLWELESE---PDLG 307
Query: 64 EGAVAHGH 71
+GA GH
Sbjct: 308 DGAAISGH 315
>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
Length = 4753
Score = 28.9 bits (63), Expect = 7.5
Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 132 GHKGAEDRWATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYGVQQQHREGPVWVGVVQQ 191
G K +D W + LA L G GE V +Q +P H + P W+ +++
Sbjct: 1402 GEKNTDD-WESSPNTQTQVEALAVLGAG-GEEVKLQGPLP------LHPDLPKWLASLEK 1453
Query: 192 CAQLPLLQPIATHVPLGMQEGHWGGLCVKK 221
C +L L+ + V + G G +K+
Sbjct: 1454 CLRLALVHMLQGCVAARLARGPSLGEALKQ 1483
>gi|169212963 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 28.9 bits (63), Expect = 7.5
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 140 WATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYG 174
W T QR+GP SH S G + P +PG G
Sbjct: 19 WKTHVQREGPRSH----SLGTSSAFWLSPPLPGEG 49
>gi|169213148 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 28.9 bits (63), Expect = 7.5
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 140 WATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYG 174
W T QR+GP SH S G + P +PG G
Sbjct: 19 WKTHVQREGPRSH----SLGTSSAFWLSPPLPGEG 49
>gi|169212812 PREDICTED: hypothetical protein [Homo sapiens]
Length = 134
Score = 28.9 bits (63), Expect = 7.5
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 140 WATEKQRDGPCSHLAALSRGDGEGVHIQPQIPGYG 174
W T QR+GP SH S G + P +PG G
Sbjct: 19 WKTHVQREGPRSH----SLGTSSAFWLSPPLPGEG 49
>gi|195927059 axin 2 [Homo sapiens]
Length = 843
Score = 28.9 bits (63), Expect = 7.5
Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 7/83 (8%)
Query: 269 VNDRSRALTSFPLKLRIPARAELECGGYVPGRQRGDDKFLPQAVAWGFCKAPAAGPQEQQ 328
+N R A T PL L L G Y Q D L + + C++P G +
Sbjct: 411 LNSREGAPTQHPLSL-------LPSGSYEEDPQTILDDHLSRVLKTPGCQSPGVGRYSPR 463
Query: 329 DEQSKRHSRRHACGYFRLPSGAR 351
H H+ + LP G +
Sbjct: 464 SRSPDHHHHHHSQYHSLLPPGGK 486
>gi|47551356 hypothetical protein LOC408029 [Homo sapiens]
Length = 209
Score = 28.5 bits (62), Expect = 9.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 309 PQAVAWGFCKAPAAGPQEQQDEQSKRHSRRHACGYFRLP 347
P A A G PA G EQ+ E R S R +C R P
Sbjct: 154 PAATAAGAVCLPAGGAGEQEKEPVSRGSSRSSCSQRRPP 192
>gi|47524184 hypothetical protein LOC29798 [Homo sapiens]
Length = 203
Score = 28.5 bits (62), Expect = 9.8
Identities = 16/39 (41%), Positives = 18/39 (46%)
Query: 309 PQAVAWGFCKAPAAGPQEQQDEQSKRHSRRHACGYFRLP 347
P A A G PA G EQ+ E R S R +C R P
Sbjct: 148 PAATAAGAVCLPAGGAGEQEKEPVSRGSSRSSCSQRRPP 186
>gi|197304777 TBC1 domain family, member 5 isoform a [Homo sapiens]
Length = 817
Score = 28.5 bits (62), Expect = 9.8
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 269 VNDRSRALTSFPLKLRIPARAELECGGYVPGRQRGDDK--FLPQAVAWGFCKAPAAGPQE 326
+N S +L +F KL PA A GG VPG +P + +AP+ Q+
Sbjct: 454 INKVSNSLINFGRKLISPAMAPGSAGGPVPGGNSSSSSSVVIPTRTS---AEAPSHHLQQ 510
Query: 327 QQDEQ 331
QQ +Q
Sbjct: 511 QQQQQ 515
>gi|197304775 TBC1 domain family, member 5 isoform b [Homo sapiens]
Length = 795
Score = 28.5 bits (62), Expect = 9.8
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 269 VNDRSRALTSFPLKLRIPARAELECGGYVPGRQRGDDK--FLPQAVAWGFCKAPAAGPQE 326
+N S +L +F KL PA A GG VPG +P + +AP+ Q+
Sbjct: 454 INKVSNSLINFGRKLISPAMAPGSAGGPVPGGNSSSSSSVVIPTRTS---AEAPSHHLQQ 510
Query: 327 QQDEQ 331
QQ +Q
Sbjct: 511 QQQQQ 515
>gi|7661998 TBC1 domain family, member 5 isoform b [Homo sapiens]
Length = 795
Score = 28.5 bits (62), Expect = 9.8
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 269 VNDRSRALTSFPLKLRIPARAELECGGYVPGRQRGDDK--FLPQAVAWGFCKAPAAGPQE 326
+N S +L +F KL PA A GG VPG +P + +AP+ Q+
Sbjct: 454 INKVSNSLINFGRKLISPAMAPGSAGGPVPGGNSSSSSSVVIPTRTS---AEAPSHHLQQ 510
Query: 327 QQDEQ 331
QQ +Q
Sbjct: 511 QQQQQ 515
>gi|190014607 netrin G2 [Homo sapiens]
Length = 530
Score = 28.5 bits (62), Expect = 9.8
Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Query: 200 PIATHVPLGMQEGHWGGLCVKKYQQLTAAKGPKVCTHSVTVSWNQTHSSAPDGAC--RKG 257
P H P M + GL +Q +T ++ P ++T+SWN+T D G
Sbjct: 86 PDLAHPPRLMFDKEEEGLATY-WQSITWSRYPSPLEANITLSWNKTVELTDDVVMTFEYG 144
Query: 258 GPQYRVLQKPCVNDRS 273
P VL+K N R+
Sbjct: 145 RPTVMVLEKSLDNGRT 160
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.135 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,547,847
Number of Sequences: 37866
Number of extensions: 906593
Number of successful extensions: 1961
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1953
Number of HSP's gapped (non-prelim): 20
length of query: 363
length of database: 18,247,518
effective HSP length: 104
effective length of query: 259
effective length of database: 14,309,454
effective search space: 3706148586
effective search space used: 3706148586
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.