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Search of human proteins with 118582275
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|118582275 superoxide dismutase 3, extracellular precursor
[Homo sapiens]
(240 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118582275 superoxide dismutase 3, extracellular precursor [Ho... 498 e-141
gi|4507149 superoxide dismutase 1, soluble [Homo sapiens] 105 5e-23
gi|4826665 copper chaperone for superoxide dismutase [Homo sapiens] 87 2e-17
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 31 1.1
gi|58530876 melanoma antigen family C, 1 [Homo sapiens] 30 2.4
gi|118918415 shank-interacting protein-like 1 [Homo sapiens] 30 2.4
gi|38045906 von Hippel-Lindau tumor suppressor isoform 2 [Homo s... 29 3.2
gi|150010552 FK506 binding protein 15, 133kDa [Homo sapiens] 29 3.2
gi|169165408 PREDICTED: hypothetical protein [Homo sapiens] 28 7.1
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 28 7.1
gi|169165822 PREDICTED: hypothetical protein [Homo sapiens] 28 7.1
gi|169165004 PREDICTED: hypothetical protein [Homo sapiens] 28 7.1
gi|31543535 R3H domain containing 1 [Homo sapiens] 28 7.1
gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens] 28 7.1
gi|193804923 hypothetical protein LOC55086 [Homo sapiens] 28 7.1
gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 28 9.2
gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 28 9.2
gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 28 9.2
gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo sa... 28 9.2
gi|148612853 ATP-binding cassette, sub-family F (GCN20), member ... 28 9.2
>gi|118582275 superoxide dismutase 3, extracellular precursor [Homo
sapiens]
Length = 240
Score = 498 bits (1281), Expect = e-141
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MLALLCSCLLLAAGASDAWTGEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGALH 60
MLALLCSCLLLAAGASDAWTGEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGALH
Sbjct: 1 MLALLCSCLLLAAGASDAWTGEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGALH 60
Query: 61 AACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGD 120
AACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGD
Sbjct: 61 AACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGD 120
Query: 121 LSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVV 180
LSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVV
Sbjct: 121 LSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVV 180
Query: 181 HAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESECKAA 240
HAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESECKAA
Sbjct: 181 HAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESECKAA 240
>gi|4507149 superoxide dismutase 1, soluble [Homo sapiens]
Length = 154
Score = 105 bits (261), Expect = 5e-23
Identities = 57/142 (40%), Positives = 78/142 (54%), Gaps = 11/142 (7%)
Query: 78 VTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAV 137
V G++ F Q + + +++G HVH+FGD + GC S GPH+NPL+
Sbjct: 15 VQGIINFEQKESNGPVKVWGSIKGL----TEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR 70
Query: 138 PH------PQHPGDFGNF-AVRDGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRG 190
H +H GD GN A +DG SL+G H I+GR +VVH DDLG+G
Sbjct: 71 KHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKG 130
Query: 191 GNQASVENGNAGRRLACCVVGV 212
GN+ S + GNAG RLAC V+G+
Sbjct: 131 GNEESTKTGNAGSRLACGVIGI 152
>gi|4826665 copper chaperone for superoxide dismutase [Homo sapiens]
Length = 274
Score = 86.7 bits (213), Expect = 2e-17
Identities = 63/178 (35%), Positives = 85/178 (47%), Gaps = 29/178 (16%)
Query: 78 VTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAV 137
V GVV F QL P L +EG +HVHQ+GDL+ C S G H+NP
Sbjct: 99 VQGVVRFLQLTPERCL-----IEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGA 153
Query: 138 PH--PQ----HPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRGG 191
H PQ H GD GN VR + R + ++GR++++ GEDDLGRGG
Sbjct: 154 SHGGPQDSDRHRGDLGN--VRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRGG 211
Query: 192 NQASVENGNAGRRLACCVVG-----------VC---GPGLWERQAREHSERKKRRRES 235
+ S GN+G RLAC ++ +C G +WE + R + K R+ES
Sbjct: 212 HPLSKITGNSGERLACGIIARSAGLFQNPKQICSCDGLTIWEERGRPIA--GKGRKES 267
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 30.8 bits (68), Expect = 1.1
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 188 GRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESE 236
G+ + E+G GR C G G W+ + RE E+ K R E E
Sbjct: 639 GKAKSVGEAEDGPEGRGDGTCEEGSSGAEHWQDEEREKGEKDKGRGEME 687
>gi|58530876 melanoma antigen family C, 1 [Homo sapiens]
Length = 1142
Score = 29.6 bits (65), Expect = 2.4
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 102 FPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAVP 138
FP P ++ H F QG +S PHY P + P
Sbjct: 564 FPQSPPQGEDSLSPHYFPQSPQGEDSLSPHYFPQSPP 600
>gi|118918415 shank-interacting protein-like 1 [Homo sapiens]
Length = 387
Score = 29.6 bits (65), Expect = 2.4
Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 6/84 (7%)
Query: 60 HAACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFG 119
H A QV P T+ A Q +V + F R + + P S + V Q G
Sbjct: 239 HVALQVHPHCTVAALQEQVFSELGFPPAVQRWVIGRCLCV------PERSLASYGVRQDG 292
Query: 120 DLSQGCESTGPHYNPLAVPHPQHP 143
D + + P P P PQHP
Sbjct: 293 DPAFLYLLSAPREAPATGPSPQHP 316
>gi|38045906 von Hippel-Lindau tumor suppressor isoform 2 [Homo
sapiens]
Length = 172
Score = 29.3 bits (64), Expect = 3.2
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)
Query: 66 QPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEG----FPTEPNSSSRAIHVHQFGDL 121
+P L + R V+F +PR L + +G +PT P + R IH ++ L
Sbjct: 58 RPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRVYTL 117
Query: 122 SQGC 125
+ C
Sbjct: 118 KERC 121
>gi|150010552 FK506 binding protein 15, 133kDa [Homo sapiens]
Length = 1219
Score = 29.3 bits (64), Expect = 3.2
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
Query: 58 ALHAACQVQPSATLDAAQPRVTGV-VLFRQLAPRAKLDAFFALEGFPT--EPNSSSRAIH 114
+LH A P T A QP VTG+ L + LD+ A+ G +P + +A
Sbjct: 411 SLHPAHPALPQMTSQAPQPSVTGLQAPSAALMQVSSLDSHSAVSGNAQSFQPYAGMQAYA 470
Query: 115 VHQFGDLSQGCESTGPHY-NPLA-VPHPQHPGDFGNFAVRD 153
Q ++ + P Y PL+ PH Q GD +F + +
Sbjct: 471 YPQASAVTSQLQPVRPLYPAPLSQPPHFQGSGDMASFLMTE 511
>gi|169165408 PREDICTED: hypothetical protein [Homo sapiens]
Length = 172
Score = 28.1 bits (61), Expect = 7.1
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 89 PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAVPHPQHPGDFGN 148
P + L+ FF EG + + IH Q GP +PL P +HPG G
Sbjct: 19 PSSLLETFFFPEG-----DGTVTLIHPGQ-----------GPQTSPLLRPRRRHPGSTGP 62
Query: 149 FAVRDGSLWRYRAGLAASLA 168
S W+ RA A L+
Sbjct: 63 RDRAAESAWKRRALKAKRLS 82
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 28.1 bits (61), Expect = 7.1
Identities = 42/145 (28%), Positives = 55/145 (37%), Gaps = 27/145 (18%)
Query: 73 AAQPRVTGVVLFRQLA-PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPH 131
AA+P + G + R LA A+L + P S RA + H+ ++ G
Sbjct: 576 AARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGN-HRVREIEFGSAL---- 630
Query: 132 YNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRGG 191
LA + PG FG AGL A GP S VV+ E L
Sbjct: 631 ---LAALNTLGPGSFG-------------AGLGAQ--GPRSSTPECPVVNGSEWGLAA-- 670
Query: 192 NQASVENGNAGRRLACCVVGVCGPG 216
S E G+ GR G+CGPG
Sbjct: 671 -PLSPERGSPGRPAFLRSPGLCGPG 694
>gi|169165822 PREDICTED: hypothetical protein [Homo sapiens]
Length = 172
Score = 28.1 bits (61), Expect = 7.1
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 89 PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAVPHPQHPGDFGN 148
P + L+ FF EG + + IH Q GP +PL P +HPG G
Sbjct: 19 PSSLLETFFFPEG-----DGTVTLIHPGQ-----------GPQTSPLLRPRRRHPGSTGP 62
Query: 149 FAVRDGSLWRYRAGLAASLA 168
S W+ RA A L+
Sbjct: 63 RDRAAESAWKRRALKAKRLS 82
>gi|169165004 PREDICTED: hypothetical protein [Homo sapiens]
Length = 172
Score = 28.1 bits (61), Expect = 7.1
Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 89 PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAVPHPQHPGDFGN 148
P + L+ FF EG + + IH Q GP +PL P +HPG G
Sbjct: 19 PSSLLETFFFPEG-----DGTVTLIHPGQ-----------GPQTSPLLRPRRRHPGSTGP 62
Query: 149 FAVRDGSLWRYRAGLAASLA 168
S W+ RA A L+
Sbjct: 63 RDRAAESAWKRRALKAKRLS 82
>gi|31543535 R3H domain containing 1 [Homo sapiens]
Length = 1099
Score = 28.1 bits (61), Expect = 7.1
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Query: 132 YNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAAS--LAGPHSIVGRAVVVHAGEDDLGR 189
YNP AV H P G R G+ R +A AAS L ++VG+ + + D + R
Sbjct: 939 YNPPAVLHGHIPNQQGQPGSRHGNRGRRQAKKAASTDLGAGETVVGKVLEITELPDGITR 998
>gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens]
Length = 356
Score = 28.1 bits (61), Expect = 7.1
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 189 RGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESE 236
RG ++E G L + G G G+ +++ ++H ++ K++ E
Sbjct: 7 RGSTSGAMEAPEPGEALELSLAGAHGHGVHKKKHKKHKKKHKKKHHQE 54
>gi|193804923 hypothetical protein LOC55086 [Homo sapiens]
Length = 855
Score = 28.1 bits (61), Expect = 7.1
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 129 GPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAG 169
GPH NP+AVP P S++ RA + A+L G
Sbjct: 630 GPHANPVAVPQPGASVQTKGIKPGMPSIFNRRANINANLQG 670
>gi|239752994 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 27.7 bits (60), Expect = 9.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 122 SQGCESTGPHYNPLAVPHPQHPGD 145
S+G TGP P A P P PGD
Sbjct: 258 SRGLPGTGPCPAPPATPRPDRPGD 281
>gi|239747548 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 27.7 bits (60), Expect = 9.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 122 SQGCESTGPHYNPLAVPHPQHPGD 145
S+G TGP P A P P PGD
Sbjct: 258 SRGLPGTGPCPAPPATPRPDRPGD 281
>gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo
sapiens]
Length = 538
Score = 27.7 bits (60), Expect = 9.2
Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 18/82 (21%)
Query: 135 LAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRGGNQA 194
LA + PG FG AGL A GP S VV+ E L
Sbjct: 299 LAALNTLGPGSFG-------------AGLGAQ--GPRSSTPECPVVNGSEWGLAA---PL 340
Query: 195 SVENGNAGRRLACCVVGVCGPG 216
S E G+ GR G+CGPG
Sbjct: 341 SPERGSPGRPAFLRSPGLCGPG 362
>gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo
sapiens]
Length = 313
Score = 27.7 bits (60), Expect = 9.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 122 SQGCESTGPHYNPLAVPHPQHPGD 145
S+G TGP P A P P PGD
Sbjct: 258 SRGLPGTGPCPAPPATPRPDRPGD 281
>gi|148612853 ATP-binding cassette, sub-family F (GCN20), member 3
[Homo sapiens]
Length = 709
Score = 27.7 bits (60), Expect = 9.2
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 33 EWIRDMYAKVTEIWQEVMQRRDDDGALHAACQVQPSATLDAAQPRVTG 80
E + D+ V E+ QEV DD + A CQ + TL A+P+ G
Sbjct: 35 ESVDDLVEAVGELLQEVSGDSKDDAGIRAVCQ-RMYNTLRLAEPQSQG 81
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.133 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,623,378
Number of Sequences: 37866
Number of extensions: 499480
Number of successful extensions: 1449
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1437
Number of HSP's gapped (non-prelim): 21
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.