BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|118582275 superoxide dismutase 3, extracellular precursor [Homo sapiens] (240 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|118582275 superoxide dismutase 3, extracellular precursor [Ho... 498 e-141 gi|4507149 superoxide dismutase 1, soluble [Homo sapiens] 105 5e-23 gi|4826665 copper chaperone for superoxide dismutase [Homo sapiens] 87 2e-17 gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 31 1.1 gi|58530876 melanoma antigen family C, 1 [Homo sapiens] 30 2.4 gi|118918415 shank-interacting protein-like 1 [Homo sapiens] 30 2.4 gi|38045906 von Hippel-Lindau tumor suppressor isoform 2 [Homo s... 29 3.2 gi|150010552 FK506 binding protein 15, 133kDa [Homo sapiens] 29 3.2 gi|169165408 PREDICTED: hypothetical protein [Homo sapiens] 28 7.1 gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 28 7.1 gi|169165822 PREDICTED: hypothetical protein [Homo sapiens] 28 7.1 gi|169165004 PREDICTED: hypothetical protein [Homo sapiens] 28 7.1 gi|31543535 R3H domain containing 1 [Homo sapiens] 28 7.1 gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens] 28 7.1 gi|193804923 hypothetical protein LOC55086 [Homo sapiens] 28 7.1 gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 28 9.2 gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 28 9.2 gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo ... 28 9.2 gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo sa... 28 9.2 gi|148612853 ATP-binding cassette, sub-family F (GCN20), member ... 28 9.2 >gi|118582275 superoxide dismutase 3, extracellular precursor [Homo sapiens] Length = 240 Score = 498 bits (1281), Expect = e-141 Identities = 240/240 (100%), Positives = 240/240 (100%) Query: 1 MLALLCSCLLLAAGASDAWTGEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGALH 60 MLALLCSCLLLAAGASDAWTGEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGALH Sbjct: 1 MLALLCSCLLLAAGASDAWTGEDSAEPNSDSAEWIRDMYAKVTEIWQEVMQRRDDDGALH 60 Query: 61 AACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGD 120 AACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGD Sbjct: 61 AACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGD 120 Query: 121 LSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVV 180 LSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVV Sbjct: 121 LSQGCESTGPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVV 180 Query: 181 HAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESECKAA 240 HAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESECKAA Sbjct: 181 HAGEDDLGRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESECKAA 240 >gi|4507149 superoxide dismutase 1, soluble [Homo sapiens] Length = 154 Score = 105 bits (261), Expect = 5e-23 Identities = 57/142 (40%), Positives = 78/142 (54%), Gaps = 11/142 (7%) Query: 78 VTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAV 137 V G++ F Q + + +++G HVH+FGD + GC S GPH+NPL+ Sbjct: 15 VQGIINFEQKESNGPVKVWGSIKGL----TEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR 70 Query: 138 PH------PQHPGDFGNF-AVRDGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRG 190 H +H GD GN A +DG SL+G H I+GR +VVH DDLG+G Sbjct: 71 KHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVVHEKADDLGKG 130 Query: 191 GNQASVENGNAGRRLACCVVGV 212 GN+ S + GNAG RLAC V+G+ Sbjct: 131 GNEESTKTGNAGSRLACGVIGI 152 >gi|4826665 copper chaperone for superoxide dismutase [Homo sapiens] Length = 274 Score = 86.7 bits (213), Expect = 2e-17 Identities = 63/178 (35%), Positives = 85/178 (47%), Gaps = 29/178 (16%) Query: 78 VTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAV 137 V GVV F QL P L +EG +HVHQ+GDL+ C S G H+NP Sbjct: 99 VQGVVRFLQLTPERCL-----IEGTIDGLEPGLHGLHVHQYGDLTNNCNSCGNHFNPDGA 153 Query: 138 PH--PQ----HPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRGG 191 H PQ H GD GN VR + R + ++GR++++ GEDDLGRGG Sbjct: 154 SHGGPQDSDRHRGDLGN--VRADADGRAIFRMEDEQLKVWDVIGRSLIIDEGEDDLGRGG 211 Query: 192 NQASVENGNAGRRLACCVVG-----------VC---GPGLWERQAREHSERKKRRRES 235 + S GN+G RLAC ++ +C G +WE + R + K R+ES Sbjct: 212 HPLSKITGNSGERLACGIIARSAGLFQNPKQICSCDGLTIWEERGRPIA--GKGRKES 267 >gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo sapiens] Length = 1152 Score = 30.8 bits (68), Expect = 1.1 Identities = 16/49 (32%), Positives = 22/49 (44%) Query: 188 GRGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESE 236 G+ + E+G GR C G G W+ + RE E+ K R E E Sbjct: 639 GKAKSVGEAEDGPEGRGDGTCEEGSSGAEHWQDEEREKGEKDKGRGEME 687 >gi|58530876 melanoma antigen family C, 1 [Homo sapiens] Length = 1142 Score = 29.6 bits (65), Expect = 2.4 Identities = 13/37 (35%), Positives = 17/37 (45%) Query: 102 FPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAVP 138 FP P ++ H F QG +S PHY P + P Sbjct: 564 FPQSPPQGEDSLSPHYFPQSPQGEDSLSPHYFPQSPP 600 >gi|118918415 shank-interacting protein-like 1 [Homo sapiens] Length = 387 Score = 29.6 bits (65), Expect = 2.4 Identities = 24/84 (28%), Positives = 32/84 (38%), Gaps = 6/84 (7%) Query: 60 HAACQVQPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEGFPTEPNSSSRAIHVHQFG 119 H A QV P T+ A Q +V + F R + + P S + V Q G Sbjct: 239 HVALQVHPHCTVAALQEQVFSELGFPPAVQRWVIGRCLCV------PERSLASYGVRQDG 292 Query: 120 DLSQGCESTGPHYNPLAVPHPQHP 143 D + + P P P PQHP Sbjct: 293 DPAFLYLLSAPREAPATGPSPQHP 316 >gi|38045906 von Hippel-Lindau tumor suppressor isoform 2 [Homo sapiens] Length = 172 Score = 29.3 bits (64), Expect = 3.2 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 66 QPSATLDAAQPRVTGVVLFRQLAPRAKLDAFFALEG----FPTEPNSSSRAIHVHQFGDL 121 +P L + R V+F +PR L + +G +PT P + R IH ++ L Sbjct: 58 RPRPVLRSVNSREPSQVIFCNRSPRVVLPVWLNFDGEPQPYPTLPPGTGRRIHSYRVYTL 117 Query: 122 SQGC 125 + C Sbjct: 118 KERC 121 >gi|150010552 FK506 binding protein 15, 133kDa [Homo sapiens] Length = 1219 Score = 29.3 bits (64), Expect = 3.2 Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 5/101 (4%) Query: 58 ALHAACQVQPSATLDAAQPRVTGV-VLFRQLAPRAKLDAFFALEGFPT--EPNSSSRAIH 114 +LH A P T A QP VTG+ L + LD+ A+ G +P + +A Sbjct: 411 SLHPAHPALPQMTSQAPQPSVTGLQAPSAALMQVSSLDSHSAVSGNAQSFQPYAGMQAYA 470 Query: 115 VHQFGDLSQGCESTGPHY-NPLA-VPHPQHPGDFGNFAVRD 153 Q ++ + P Y PL+ PH Q GD +F + + Sbjct: 471 YPQASAVTSQLQPVRPLYPAPLSQPPHFQGSGDMASFLMTE 511 >gi|169165408 PREDICTED: hypothetical protein [Homo sapiens] Length = 172 Score = 28.1 bits (61), Expect = 7.1 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 16/80 (20%) Query: 89 PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAVPHPQHPGDFGN 148 P + L+ FF EG + + IH Q GP +PL P +HPG G Sbjct: 19 PSSLLETFFFPEG-----DGTVTLIHPGQ-----------GPQTSPLLRPRRRHPGSTGP 62 Query: 149 FAVRDGSLWRYRAGLAASLA 168 S W+ RA A L+ Sbjct: 63 RDRAAESAWKRRALKAKRLS 82 >gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo sapiens] Length = 870 Score = 28.1 bits (61), Expect = 7.1 Identities = 42/145 (28%), Positives = 55/145 (37%), Gaps = 27/145 (18%) Query: 73 AAQPRVTGVVLFRQLA-PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPH 131 AA+P + G + R LA A+L + P S RA + H+ ++ G Sbjct: 576 AARPGLAGSGVQRALALAAAQLGGWTTCVVSPNLRRGSRRAGN-HRVREIEFGSAL---- 630 Query: 132 YNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRGG 191 LA + PG FG AGL A GP S VV+ E L Sbjct: 631 ---LAALNTLGPGSFG-------------AGLGAQ--GPRSSTPECPVVNGSEWGLAA-- 670 Query: 192 NQASVENGNAGRRLACCVVGVCGPG 216 S E G+ GR G+CGPG Sbjct: 671 -PLSPERGSPGRPAFLRSPGLCGPG 694 >gi|169165822 PREDICTED: hypothetical protein [Homo sapiens] Length = 172 Score = 28.1 bits (61), Expect = 7.1 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 16/80 (20%) Query: 89 PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAVPHPQHPGDFGN 148 P + L+ FF EG + + IH Q GP +PL P +HPG G Sbjct: 19 PSSLLETFFFPEG-----DGTVTLIHPGQ-----------GPQTSPLLRPRRRHPGSTGP 62 Query: 149 FAVRDGSLWRYRAGLAASLA 168 S W+ RA A L+ Sbjct: 63 RDRAAESAWKRRALKAKRLS 82 >gi|169165004 PREDICTED: hypothetical protein [Homo sapiens] Length = 172 Score = 28.1 bits (61), Expect = 7.1 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 16/80 (20%) Query: 89 PRAKLDAFFALEGFPTEPNSSSRAIHVHQFGDLSQGCESTGPHYNPLAVPHPQHPGDFGN 148 P + L+ FF EG + + IH Q GP +PL P +HPG G Sbjct: 19 PSSLLETFFFPEG-----DGTVTLIHPGQ-----------GPQTSPLLRPRRRHPGSTGP 62 Query: 149 FAVRDGSLWRYRAGLAASLA 168 S W+ RA A L+ Sbjct: 63 RDRAAESAWKRRALKAKRLS 82 >gi|31543535 R3H domain containing 1 [Homo sapiens] Length = 1099 Score = 28.1 bits (61), Expect = 7.1 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 2/60 (3%) Query: 132 YNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAAS--LAGPHSIVGRAVVVHAGEDDLGR 189 YNP AV H P G R G+ R +A AAS L ++VG+ + + D + R Sbjct: 939 YNPPAVLHGHIPNQQGQPGSRHGNRGRRQAKKAASTDLGAGETVVGKVLEITELPDGITR 998 >gi|94536798 high mobility group AT-hook 1-like 4 [Homo sapiens] Length = 356 Score = 28.1 bits (61), Expect = 7.1 Identities = 11/48 (22%), Positives = 24/48 (50%) Query: 189 RGGNQASVENGNAGRRLACCVVGVCGPGLWERQAREHSERKKRRRESE 236 RG ++E G L + G G G+ +++ ++H ++ K++ E Sbjct: 7 RGSTSGAMEAPEPGEALELSLAGAHGHGVHKKKHKKHKKKHKKKHHQE 54 >gi|193804923 hypothetical protein LOC55086 [Homo sapiens] Length = 855 Score = 28.1 bits (61), Expect = 7.1 Identities = 15/41 (36%), Positives = 20/41 (48%) Query: 129 GPHYNPLAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAG 169 GPH NP+AVP P S++ RA + A+L G Sbjct: 630 GPHANPVAVPQPGASVQTKGIKPGMPSIFNRRANINANLQG 670 >gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosophila) [Homo sapiens] Length = 313 Score = 27.7 bits (60), Expect = 9.2 Identities = 12/24 (50%), Positives = 13/24 (54%) Query: 122 SQGCESTGPHYNPLAVPHPQHPGD 145 S+G TGP P A P P PGD Sbjct: 258 SRGLPGTGPCPAPPATPRPDRPGD 281 >gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosophila) [Homo sapiens] Length = 313 Score = 27.7 bits (60), Expect = 9.2 Identities = 12/24 (50%), Positives = 13/24 (54%) Query: 122 SQGCESTGPHYNPLAVPHPQHPGD 145 S+G TGP P A P P PGD Sbjct: 258 SRGLPGTGPCPAPPATPRPDRPGD 281 >gi|239745974 PREDICTED: hypothetical protein XP_002343630 [Homo sapiens] Length = 538 Score = 27.7 bits (60), Expect = 9.2 Identities = 27/82 (32%), Positives = 31/82 (37%), Gaps = 18/82 (21%) Query: 135 LAVPHPQHPGDFGNFAVRDGSLWRYRAGLAASLAGPHSIVGRAVVVHAGEDDLGRGGNQA 194 LA + PG FG AGL A GP S VV+ E L Sbjct: 299 LAALNTLGPGSFG-------------AGLGAQ--GPRSSTPECPVVNGSEWGLAA---PL 340 Query: 195 SVENGNAGRRLACCVVGVCGPG 216 S E G+ GR G+CGPG Sbjct: 341 SPERGSPGRPAFLRSPGLCGPG 362 >gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo sapiens] Length = 313 Score = 27.7 bits (60), Expect = 9.2 Identities = 12/24 (50%), Positives = 13/24 (54%) Query: 122 SQGCESTGPHYNPLAVPHPQHPGD 145 S+G TGP P A P P PGD Sbjct: 258 SRGLPGTGPCPAPPATPRPDRPGD 281 >gi|148612853 ATP-binding cassette, sub-family F (GCN20), member 3 [Homo sapiens] Length = 709 Score = 27.7 bits (60), Expect = 9.2 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%) Query: 33 EWIRDMYAKVTEIWQEVMQRRDDDGALHAACQVQPSATLDAAQPRVTG 80 E + D+ V E+ QEV DD + A CQ + TL A+P+ G Sbjct: 35 ESVDDLVEAVGELLQEVSGDSKDDAGIRAVCQ-RMYNTLRLAEPQSQG 81 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.319 0.133 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 10,623,378 Number of Sequences: 37866 Number of extensions: 499480 Number of successful extensions: 1449 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 9 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 1437 Number of HSP's gapped (non-prelim): 21 length of query: 240 length of database: 18,247,518 effective HSP length: 99 effective length of query: 141 effective length of database: 14,498,784 effective search space: 2044328544 effective search space used: 2044328544 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.