Search of human proteins with 118200337

Search of human proteins with 118200337

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|118200337 family with sequence similarity 127, member C
[Homo sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|118200337 family with sequence similarity 127, member C [Homo...   234   1e-62
gi|118200333 family with sequence similarity 127, member B isofo...   228   8e-61
gi|239757911 PREDICTED: similar to Family with sequence similari...   226   3e-60
gi|118200335 family with sequence similarity 127, member A [Homo...   222   6e-59
gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo sapi...   135   5e-33
gi|197245393 family with sequence similarity 127, member B isofo...   130   3e-31
gi|49355807 leucine zipper, down-regulated in cancer 1-like [Hom...    79   1e-15
gi|199562283 retrotransposon-like 1 [Homo sapiens]                     58   2e-09
gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]         58   2e-09
gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]       58   2e-09
gi|126157477 hypothetical protein LOC79680 [Homo sapiens]              52   1e-07
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]     52   1e-07
gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]       51   2e-07
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]     27   3.5  
gi|239756270 PREDICTED: StAR-related lipid transfer (START) doma...    26   7.8  
gi|239750815 PREDICTED: StAR-related lipid transfer (START) doma...    26   7.8  
gi|239745175 PREDICTED: StAR-related lipid transfer (START) doma...    26   7.8  

>gi|118200337 family with sequence similarity 127, member C [Homo
           sapiens]
          Length = 113

 Score =  234 bits (597), Expect = 1e-62
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MEGRVQLMKALLARPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60
           MEGRVQLMKALLARPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN
Sbjct: 1   MEGRVQLMKALLARPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60

Query: 61  DALKVTFLITRLTGPALQWVIPYIKKESPLLSDYRGFLAEMKRVFGWEEDEDF 113
           DALKVTFLITRLTGPALQWVIPYIKKESPLLSDYRGFLAEMKRVFGWEEDEDF
Sbjct: 61  DALKVTFLITRLTGPALQWVIPYIKKESPLLSDYRGFLAEMKRVFGWEEDEDF 113


>gi|118200333 family with sequence similarity 127, member B isoform
           1 [Homo sapiens]
          Length = 113

 Score =  228 bits (581), Expect = 8e-61
 Identities = 109/113 (96%), Positives = 112/113 (99%)

Query: 1   MEGRVQLMKALLARPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60
           M+GRVQLMKALLA PLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN
Sbjct: 1   MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60

Query: 61  DALKVTFLITRLTGPALQWVIPYIKKESPLLSDYRGFLAEMKRVFGWEEDEDF 113
           DALKVTFLITRLTGPALQWVIPYI+KESPLL+DYRGFLAEMKRVFGWEEDEDF
Sbjct: 61  DALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVFGWEEDEDF 113


>gi|239757911 PREDICTED: similar to Family with sequence similarity
           127, member B [Homo sapiens]
          Length = 113

 Score =  226 bits (576), Expect = 3e-60
 Identities = 108/113 (95%), Positives = 111/113 (98%)

Query: 1   MEGRVQLMKALLARPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60
           M+GRVQLMKALLA PLRPAARRWRNPIPFPETFDGDTDRLPEFIVQT SYMFVDENTFSN
Sbjct: 1   MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSN 60

Query: 61  DALKVTFLITRLTGPALQWVIPYIKKESPLLSDYRGFLAEMKRVFGWEEDEDF 113
           DALKVTFLITRLTGPALQWVIPYI+KESPLL+DYRGFLAEMKRVFGWEEDEDF
Sbjct: 61  DALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVFGWEEDEDF 113


>gi|118200335 family with sequence similarity 127, member A [Homo
           sapiens]
          Length = 113

 Score =  222 bits (565), Expect = 6e-59
 Identities = 105/113 (92%), Positives = 110/113 (97%)

Query: 1   MEGRVQLMKALLARPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60
           M+GRVQL+KALLA P+RPA RRWRNPIPFPETFDGDTDRLPEFIVQT SYMFVDENTFS+
Sbjct: 1   MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSS 60

Query: 61  DALKVTFLITRLTGPALQWVIPYIKKESPLLSDYRGFLAEMKRVFGWEEDEDF 113
           DALKVTFLITRLTGPALQWVIPYIKKESPLL+DYRGFLAEMKRVFGWEEDEDF
Sbjct: 61  DALKVTFLITRLTGPALQWVIPYIKKESPLLNDYRGFLAEMKRVFGWEEDEDF 113


>gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo
           sapiens]
          Length = 146

 Score =  135 bits (341), Expect = 5e-33
 Identities = 63/104 (60%), Positives = 82/104 (78%), Gaps = 4/104 (3%)

Query: 9   KALLARPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFL 68
           +A L R +RP +     P+PFPETF+G++ RLPEFIVQT+SYM V+EN F NDA+KV FL
Sbjct: 37  RASLLRQVRPPSC----PVPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMKVAFL 92

Query: 69  ITRLTGPALQWVIPYIKKESPLLSDYRGFLAEMKRVFGWEEDED 112
           I+ LTG A +WV+PYI+ +SP+L DYR FL EMK+ FGW++DED
Sbjct: 93  ISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQCFGWDDDED 136


>gi|197245393 family with sequence similarity 127, member B
          isoform 2 [Homo sapiens]
          Length = 83

 Score =  130 bits (326), Expect = 3e-31
 Identities = 62/64 (96%), Positives = 63/64 (98%)

Query: 1  MEGRVQLMKALLARPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60
          M+GRVQLMKALLA PLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN
Sbjct: 1  MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60

Query: 61 DALK 64
          DALK
Sbjct: 61 DALK 64


>gi|49355807 leucine zipper, down-regulated in cancer 1-like [Homo
           sapiens]
          Length = 239

 Score = 78.6 bits (192), Expect = 1e-15
 Identities = 34/80 (42%), Positives = 53/80 (66%)

Query: 26  PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIK 85
           P   PE F GD  RL  F++Q   +M    + F  +A +V FL++RLTG A +W IP+++
Sbjct: 98  PTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQ 157

Query: 86  KESPLLSDYRGFLAEMKRVF 105
            +SPL ++Y+GFLAE++R +
Sbjct: 158 PDSPLRNNYQGFLAELRRTY 177


>gi|199562283 retrotransposon-like 1 [Homo sapiens]
          Length = 1358

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 29/83 (34%), Positives = 44/83 (53%)

Query: 27  IPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIKK 86
           +P P+ F GD     EFIV     +      F ND L+V ++I  L+G AL+W    +++
Sbjct: 200 LPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQE 259

Query: 87  ESPLLSDYRGFLAEMKRVFGWEE 109
            SPL+ D+  FL  M  VF + +
Sbjct: 260 NSPLIGDFPAFLEAMSEVFEYRQ 282


>gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]
          Length = 325

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 28/80 (35%), Positives = 43/80 (53%)

Query: 26  PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIK 85
           P   PE FDG+ D L  F+ Q   +M      FS D ++V F+ + +TG A +W    ++
Sbjct: 79  PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLE 138

Query: 86  KESPLLSDYRGFLAEMKRVF 105
           +   L+ +Y  F+ EMK VF
Sbjct: 139 RSHYLMHNYPAFMMEMKHVF 158


>gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]
          Length = 708

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 28/80 (35%), Positives = 43/80 (53%)

Query: 26  PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIK 85
           P   PE FDG+ D L  F+ Q   +M      FS D ++V F+ + +TG A +W    ++
Sbjct: 79  PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLE 138

Query: 86  KESPLLSDYRGFLAEMKRVF 105
           +   L+ +Y  F+ EMK VF
Sbjct: 139 RSHYLMHNYPAFMMEMKHVF 158


>gi|126157477 hypothetical protein LOC79680 [Homo sapiens]
          Length = 364

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 26/75 (34%), Positives = 37/75 (49%)

Query: 30  PETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIKKESP 89
           P TFDG    L  F+ Q   YM      + ++  +V  ++ RLTG A  W  PY+  + P
Sbjct: 104 PGTFDGSPWLLDRFLAQLGDYMSFHFEHYQDNISRVCEILRRLTGRAQAWAAPYLDGDLP 163

Query: 90  LLSDYRGFLAEMKRV 104
           L  DY  F  ++K V
Sbjct: 164 LPDDYELFCQDLKEV 178


>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
          Length = 569

 Score = 51.6 bits (122), Expect = 1e-07
 Identities = 32/91 (35%), Positives = 47/91 (51%), Gaps = 6/91 (6%)

Query: 15  PLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTG 74
           PL P  R      P  E F GD   L EF++Q  +++   E  F   A +V FLI+  TG
Sbjct: 144 PLAPLER------PEIEPFSGDPVYLAEFLMQLETFIADHEVHFPGGAERVAFLISFFTG 197

Query: 75  PALQWVIPYIKKESPLLSDYRGFLAEMKRVF 105
            A  W I   ++ SPL +++  FL E+++ F
Sbjct: 198 EAKDWAISVTQEGSPLHANFPRFLDEIRKEF 228


>gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]
          Length = 475

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 27/80 (33%), Positives = 43/80 (53%)

Query: 26  PIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSNDALKVTFLITRLTGPALQWVIPYIK 85
           P+ +  TF GD+ +LPEF+VQ  SYM V  + +  +A  V+F+    +G A  W    + 
Sbjct: 237 PLQYTLTFSGDSQKLPEFLVQLYSYMRVRGHLYPTEAALVSFVGNCFSGRAGWWFQLLLD 296

Query: 86  KESPLLSDYRGFLAEMKRVF 105
            +SPLL     F+  ++  F
Sbjct: 297 IQSPLLEQCESFIPVLQDTF 316


>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
          Length = 1388

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 12/48 (25%), Positives = 26/48 (54%)

Query: 58   FSNDALKVTFLITRLTGPALQWVIPYIKKESPLLSDYRGFLAEMKRVF 105
            F +D+ ++ FL++   G A +W I  ++   PL  + + FL   + ++
Sbjct: 1179 FLDDSERMAFLVSLHLGAAERWFILQMEVGEPLSHENKSFLRRSQGIY 1226


>gi|239756270 PREDICTED: StAR-related lipid transfer (START) domain
            containing 9 [Homo sapiens]
          Length = 4614

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 12   LARPLRPAARRWRNPIPFPETFDGDTDRLPE 42
            L  PL+P  R+W    P PE  + D  +L E
Sbjct: 1072 LIEPLKPEERKW--DFPEPENSESDDSQLSE 1100


>gi|239750815 PREDICTED: StAR-related lipid transfer (START) domain
            containing 9 [Homo sapiens]
          Length = 4614

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 12   LARPLRPAARRWRNPIPFPETFDGDTDRLPE 42
            L  PL+P  R+W    P PE  + D  +L E
Sbjct: 1072 LIEPLKPEERKW--DFPEPENSESDDSQLSE 1100


>gi|239745175 PREDICTED: StAR-related lipid transfer (START) domain
            containing 9 [Homo sapiens]
          Length = 4614

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 12   LARPLRPAARRWRNPIPFPETFDGDTDRLPE 42
            L  PL+P  R+W    P PE  + D  +L E
Sbjct: 1072 LIEPLKPEERKW--DFPEPENSESDDSQLSE 1100


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.140    0.435 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,565,518
Number of Sequences: 37866
Number of extensions: 180567
Number of successful extensions: 322
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 308
Number of HSP's gapped (non-prelim): 17
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.