Guide to the Human Genome
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Name: LOC100290555 Sequence: fasta or formatted (248aa) NCBI GI: 239751693
Description:

PREDICTED: hypothetical protein XP_002347967

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            13.7         34           2
 C cysteine            0.8          2           1
 D aspartate           2.4          6           2
 E glutamate           5.6         14           1
 F phenylalanine       0.4          1           1
 G glycine             8.5         21           2
 H histidine           1.2          3           1
 I isoleucine          2.8          7           1
 K lysine              2.0          5           1
 L leucine             8.5         21           2
 M methionine          1.6          4           1
 N asparagine          1.6          4           1
 P proline            12.5         31           2
 Q glutamine           5.6         14           1
 R arginine            9.7         24           2
 S serine              7.7         19           2
 T threonine           3.2          8           1
 V valine              7.7         19           3
 W tryptophan          2.0          5           1
 Y tyrosine            2.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347967 
LOC100292400          1.000   PREDICTED: hypothetical protein 
SNRPB                 0.029   small nuclear ribonucleoprotein polypeptide B/B' iso...
SNRPB                 0.029   small nuclear ribonucleoprotein polypeptide B/B' isof...
TMEM79                0.027   transmembrane protein 79 
SNRPN                 0.025   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.025   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.025   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.025   small nuclear ribonucleoprotein polypeptide N 
SNRPN                 0.025   small nuclear ribonucleoprotein polypeptide N 
PWWP2B                0.025   PWWP domain containing 2 isoform 1 
PWWP2B                0.025   PWWP domain containing 2 isoform 2 
ANO8                  0.023   anoctamin 8 
LOC728317             0.021   PREDICTED: hypothetical protein 
LOC728307             0.019   PREDICTED: hypothetical protein 
FRAT1                 0.019   GSK-3 binding protein FRAT1 
SP7                   0.019   osterix 
APC2                  0.017   adenomatosis polyposis coli 2 
ELN                   0.017   elastin isoform b precursor 
ZNF828                0.017   zinc finger protein 828 
FAM123A               0.017   hypothetical protein LOC219287 isoform 1 
ZIC5                  0.017   zinc finger protein of the cerebellum 5 
PPP2R3B               0.015   protein phosphatase 2, regulatory subunit B'', beta ...
CSF2RB                0.015   colony stimulating factor 2 receptor, beta precursor ...
ANKRD33B              0.015   PREDICTED: ankyrin repeat domain 33B 
PRDM10                0.015   PR domain containing 10 isoform 2 
PRDM10                0.015   PR domain containing 10 isoform 1 
TAF4                  0.015   TBP-associated factor 4 
MBD6                  0.015   methyl-CpG binding domain protein 6 
IL27RA                0.013   class I cytokine receptor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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