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Search of human proteins with 239751290
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751290 PREDICTED: hypothetical protein [Homo sapiens]
(196 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens] 405 e-113
gi|239751290 PREDICTED: hypothetical protein [Homo sapiens] 405 e-113
gi|34147532 myosin, light chain 10, regulatory [Homo sapiens] 30 1.3
gi|188536004 zinc finger protein 469 [Homo sapiens] 30 1.3
gi|194578909 eukaryotic translation initiation factor 4E isoform... 30 1.7
gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens] 30 1.7
gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens] 29 2.2
gi|153792103 tetratricopeptide repeat domain 22 isoform 2 [Homo ... 29 2.2
gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [H... 29 2.9
gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10 iso... 28 3.8
gi|223633939 solute carrier family 39 (zinc transporter), member... 28 6.5
gi|239751849 PREDICTED: hypothetical protein [Homo sapiens] 28 6.5
gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like ... 28 6.5
gi|113428063 PREDICTED: similar to methyl-CpG binding domain pro... 28 6.5
gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 28 6.5
gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive fa... 28 6.5
gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo sa... 28 6.5
gi|239755282 PREDICTED: similar to Tripartite motif-containing p... 27 8.5
gi|239752570 PREDICTED: hypothetical protein XP_002348292 [Homo ... 27 8.5
gi|133778961 testis expressed 15 [Homo sapiens] 27 8.5
gi|149944433 hampin [Homo sapiens] 27 8.5
>gi|239756812 PREDICTED: similar to RAD52 motif 1 [Homo sapiens]
Length = 236
Score = 405 bits (1040), Expect = e-113
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSS 60
MLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSS
Sbjct: 41 MLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSS 100
Query: 61 HQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRAL 120
HQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRAL
Sbjct: 101 HQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRAL 160
Query: 121 QKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGL 180
QKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGL
Sbjct: 161 QKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGL 220
Query: 181 STLTRAGPRRHTRAGT 196
STLTRAGPRRHTRAGT
Sbjct: 221 STLTRAGPRRHTRAGT 236
>gi|239751290 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 405 bits (1040), Expect = e-113
Identities = 196/196 (100%), Positives = 196/196 (100%)
Query: 1 MLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSS 60
MLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSS
Sbjct: 1 MLVLNSWPQAILPSWPPREQDYRLFLLEVVQEVEESTSDEQIAGGCSHSHVSAKKSEFSS 60
Query: 61 HQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRAL 120
HQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRAL
Sbjct: 61 HQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQRPGWTGDHARSRAL 120
Query: 121 QKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGL 180
QKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGL
Sbjct: 121 QKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPASAPDTQLRDTGL 180
Query: 181 STLTRAGPRRHTRAGT 196
STLTRAGPRRHTRAGT
Sbjct: 181 STLTRAGPRRHTRAGT 196
>gi|34147532 myosin, light chain 10, regulatory [Homo sapiens]
Length = 226
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/17 (70%), Positives = 13/17 (76%)
Query: 2 LVLNSWPQAILPSWPPR 18
LV NSWPQ ILP PP+
Sbjct: 5 LVSNSWPQVILPPRPPK 21
>gi|188536004 zinc finger protein 469 [Homo sapiens]
Length = 3925
Score = 30.0 bits (66), Expect = 1.3
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 103 GEEQRPGWTG----DHARS-RALQKCQSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRG 157
G+ + PG G DH + LQK + S H + G G F K GS+ K G
Sbjct: 3594 GKRRAPGARGRCAPDHFQEDHLLQKEKEVSSSHMVSEGGPRGTFHK------GSATKPAG 3647
Query: 158 FQAAEEPEDPASAPDTQLR 176
Q++ + AS P L+
Sbjct: 3648 CQSSSKDRSAASTPSKALK 3666
>gi|194578909 eukaryotic translation initiation factor 4E isoform 2
[Homo sapiens]
Length = 248
Score = 29.6 bits (65), Expect = 1.7
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 2 LVLNSWPQAILPSWPPREQDYRLFLL 27
LV N WPQ ILP PP+ + +L L
Sbjct: 143 LVSNFWPQVILPLQPPKVLELQLLCL 168
>gi|91208423 thyroid receptor-interacting protein 6 [Homo sapiens]
Length = 476
Score = 29.6 bits (65), Expect = 1.7
Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 8/95 (8%)
Query: 82 ALVFPALEINVVPLNHKDC---PWGEEQR-PGWTGDHARSRALQKCQSEGSGHRLGPFGM 137
A + P +N PL + C P G E R P W G H + Q ++ G R G
Sbjct: 36 AALQPHPRVNFCPLPSEQCYQAPGGPEDRGPAWVGSHGVLQHTQGLPADRGGLRPGSLDA 95
Query: 138 MGKFAKVRRQEL----GSSLKQRGFQAAEEPEDPA 168
EL G + ++ QA E P PA
Sbjct: 96 EIDLLSSTLAELNGGRGHASRRPDRQAYEPPPPPA 130
>gi|110735435 collagen, type V, alpha 3 preproprotein [Homo sapiens]
Length = 1745
Score = 29.3 bits (64), Expect = 2.2
Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Query: 47 SHSHVSAKKSEFSSHQNQGKDNAAVMVQSCLEGETALVFPALEINVVPLNHKDCPWGEEQ 106
+H H+ + +Q +D+ V GET L +P + +V L W +E+
Sbjct: 1550 NHPHLPDGEYWIDPNQGCARDSFRVFCNFTAGGETCL-YPDKKFEIVKL----ASWSKEK 1604
Query: 107 RPGWTGDHARSRALQKCQSEGS 128
GW R + ++GS
Sbjct: 1605 PGGWYSTFRRGKKFSYVDADGS 1626
>gi|153792103 tetratricopeptide repeat domain 22 isoform 2 [Homo
sapiens]
Length = 372
Score = 29.3 bits (64), Expect = 2.2
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 2 LVLNSWPQAILPSWPPREQDYRL 24
LV NSW QA+LP PP+ ++++
Sbjct: 350 LVSNSWAQAVLPPRPPKVLEFQV 372
>gi|226442991 jumonji, AT rich interactive domain 1D isoform 1 [Homo
sapiens]
Length = 1570
Score = 28.9 bits (63), Expect = 2.9
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 2 LVLNSWPQAILPSWPPR 18
L+ + W QA+LP WPP+
Sbjct: 467 LISSFWAQAVLPPWPPK 483
>gi|211971008 acyl-Coenzyme A dehydrogenase family, member 10
isoform a [Homo sapiens]
Length = 1090
Score = 28.5 bits (62), Expect = 3.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 2 LVLNSWPQAILPSWPPR 18
LV NSW QAI P +PP+
Sbjct: 240 LVSNSWAQAIYPPYPPK 256
>gi|223633939 solute carrier family 39 (zinc transporter), member 12
isoform 1 [Homo sapiens]
Length = 691
Score = 27.7 bits (60), Expect = 6.5
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 25 FLLEVVQEVEESTSDEQ----IAGGCSHSHVSAKKSEFSSHQNQGKDNAAVMVQSCLEGE 80
FL+E + S +D+Q + G HSH A SE S +GK + + ++S + +
Sbjct: 459 FLIEKCFILLVSPNDKQGLSLVNGHVGHSHHLALNSELSDQAGRGKSASTIQLKSPEDSQ 518
Query: 81 TA 82
A
Sbjct: 519 AA 520
>gi|239751849 PREDICTED: hypothetical protein [Homo sapiens]
Length = 491
Score = 27.7 bits (60), Expect = 6.5
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 12/50 (24%)
Query: 99 DCPWGEEQRPGWTGDHA--RSRALQKCQSE----------GSGHRLGPFG 136
+ PWG++ PG +G H R+RA+ + G RLGP G
Sbjct: 276 NAPWGQDILPGGSGGHGEPRARAILNVHAPRGRWGAVGGGEKGERLGPVG 325
>gi|89051034 PREDICTED: methyl-CpG-binding domain protein 3-like
3-like [Homo sapiens]
Length = 208
Score = 27.7 bits (60), Expect = 6.5
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 81 TALVF--PALEINVVPLNHKDCPWGEE--QRPGWTGDHARSRALQKCQSEGSGHRLGPFG 136
T+ +F P I P N G+E ++P + R +ALQ C S+G G P
Sbjct: 53 TSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGS--SPLH 110
Query: 137 MMGKFAKVRRQELGSSLKQRGFQAAEEPEDP 167
+ + + G SL + G + P +P
Sbjct: 111 LESVLSILAPGTAGESLDRAGAERVRSPLEP 141
>gi|113428063 PREDICTED: similar to methyl-CpG binding domain
protein 3-like 2 [Homo sapiens]
Length = 204
Score = 27.7 bits (60), Expect = 6.5
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 81 TALVF--PALEINVVPLNHKDCPWGEE--QRPGWTGDHARSRALQKCQSEGSGHRLGPFG 136
T+ +F P I P N G+E ++P + R +ALQ C S+G G P
Sbjct: 53 TSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGS--SPLH 110
Query: 137 MMGKFAKVRRQELGSSLKQRGFQAAEEPEDP 167
+ + + G SL + G + P +P
Sbjct: 111 LESVLSILAPGTAGESLDRAGAERVRSPLEP 141
>gi|113426932 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 563
Score = 27.7 bits (60), Expect = 6.5
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 112 GDHARSRALQKC-QSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPAS 169
G A SR L C ++ G G R G + A ++ + + R QAA P D S
Sbjct: 32 GTRASSRRLHACARAGGGGARAAGAGFAERRAAAAEPDVSAKMAGRSMQAARCPTDELS 90
>gi|239740963 PREDICTED: similar to N-ethylmaleimide-sensitive
factor [Homo sapiens]
Length = 405
Score = 27.7 bits (60), Expect = 6.5
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 112 GDHARSRALQKC-QSEGSGHRLGPFGMMGKFAKVRRQELGSSLKQRGFQAAEEPEDPAS 169
G A SR L C ++ G G R G + A ++ + + R QAA P D S
Sbjct: 32 GTRASSRRLHACARAGGGGARAAGAGFAERRAAAAEPDVSAKMAGRSMQAARCPTDELS 90
>gi|157389003 methyl-CpG binding domain protein 3-like 2 [Homo
sapiens]
Length = 208
Score = 27.7 bits (60), Expect = 6.5
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 6/91 (6%)
Query: 81 TALVF--PALEINVVPLNHKDCPWGEE--QRPGWTGDHARSRALQKCQSEGSGHRLGPFG 136
T+ +F P I P N G+E ++P + R +ALQ C S+G G P
Sbjct: 53 TSCIFRRPVTRIRSHPDNQVRRRKGDEHLEKPQQLCAYRRLQALQPCSSQGEGS--SPLH 110
Query: 137 MMGKFAKVRRQELGSSLKQRGFQAAEEPEDP 167
+ + + G SL + G + P +P
Sbjct: 111 LESVLSILAPGTAGESLDRAGAERVRSPLEP 141
>gi|239755282 PREDICTED: similar to Tripartite motif-containing
protein 43-like protein 1 [Homo sapiens]
Length = 185
Score = 27.3 bits (59), Expect = 8.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 2 LVLNSWPQAILPSWPPREQDYR 23
LVL+S QAIL PP+E DY+
Sbjct: 18 LVLDSLDQAILLPQPPKELDYK 39
>gi|239752570 PREDICTED: hypothetical protein XP_002348292 [Homo
sapiens]
Length = 185
Score = 27.3 bits (59), Expect = 8.5
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 2 LVLNSWPQAILPSWPPREQDYR 23
LVL+S QAIL PP+E DY+
Sbjct: 18 LVLDSLDQAILLPQPPKELDYK 39
>gi|133778961 testis expressed 15 [Homo sapiens]
Length = 2789
Score = 27.3 bits (59), Expect = 8.5
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Query: 29 VVQEVEESTSDEQIAGGCSHSHVSAKKSEFSSH---QNQGKDNAAVMVQSCLEGETALVF 85
VV EVE E+ A +A E+SSH +Q D + C +T+ VF
Sbjct: 164 VVSEVENQNHSEEKAQRAQQESGNAYTKEYSSHIFQDSQSSDLKTIYQTGC---QTSTVF 220
Query: 86 P 86
P
Sbjct: 221 P 221
>gi|149944433 hampin [Homo sapiens]
Length = 351
Score = 27.3 bits (59), Expect = 8.5
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 28/95 (29%)
Query: 123 CQSEGSGH-RLGPFG----------MMGKFAKVRRQ-------------ELGSSLKQRGF 158
C G GH R PFG + +F+KV+ + L ++ +R
Sbjct: 59 CGRSGKGHKRKSPFGSTERKTPVKKLAPEFSKVKTKTPKHSPIKEEPCGSLSETVCKREL 118
Query: 159 QAAEEPEDPASAPDTQLRDTGLSTLTRAGPRRHTR 193
++ E PE P S+ DT R LST + GP H +
Sbjct: 119 RSQETPEKPRSSVDTPPR---LST-PQKGPSTHPK 149
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.130 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,254,586
Number of Sequences: 37866
Number of extensions: 364370
Number of successful extensions: 908
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 899
Number of HSP's gapped (non-prelim): 23
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.