Guide to the Human Genome
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Name: LOC100290443 Sequence: fasta or formatted (55aa) NCBI GI: 239749079
Description:

PREDICTED: hypothetical protein XP_002346904

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9          6           2
 C cysteine            3.6          2           1
 D aspartate           3.6          2           1
 E glutamate           5.5          3           2
 F phenylalanine       0.0          0           0
 G glycine             9.1          5           1
 H histidine           3.6          2           1
 I isoleucine          3.6          2           1
 K lysine              3.6          2           1
 L leucine             9.1          5           2
 M methionine          1.8          1           1
 N asparagine          0.0          0           0
 P proline             5.5          3           1
 Q glutamine           5.5          3           2
 R arginine           10.9          6           3
 S serine              1.8          1           1
 T threonine           7.3          4           1
 V valine             12.7          7           1
 W tryptophan          1.8          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346904 
LOC100291958          1.000   PREDICTED: hypothetical protein XP_002346017 
LOC100287795          1.000   PREDICTED: hypothetical protein XP_002342737 
LOC100287795          1.000   PREDICTED: hypothetical protein 
LOC100292894          0.044   PREDICTED: similar to transformation related protei...
LOC100291545          0.044   PREDICTED: hypothetical protein XP_002347773 
LOC100287118          0.044   PREDICTED: hypothetical protein XP_002343546 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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