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Search of human proteins with 239750999
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750999 PREDICTED: similar to hCG2045457 [Homo sapiens]
(273 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750999 PREDICTED: similar to hCG2045457 [Homo sapiens] 564 e-161
gi|239745402 PREDICTED: similar to hCG2045457 [Homo sapiens] 564 e-161
gi|239756475 PREDICTED: similar to hCG2045457 [Homo sapiens] 471 e-133
gi|239755040 PREDICTED: hypothetical protein XP_002346201 [Homo ... 33 0.20
gi|239749529 PREDICTED: hypothetical protein XP_002347078 [Homo ... 33 0.20
gi|239743678 PREDICTED: hypothetical protein XP_002342943 [Homo ... 33 0.20
gi|29336063 plexin B3 isoform 1 [Homo sapiens] 30 1.7
gi|253795481 plexin B3 isoform 2 [Homo sapiens] 30 2.3
gi|33350928 disabled homolog 1 [Homo sapiens] 30 3.0
gi|157743252 pecanex-like 3 [Homo sapiens] 28 6.6
gi|208431824 forkhead box I3 [Homo sapiens] 28 6.6
gi|149192845 ubiquitin specific protease 24 [Homo sapiens] 28 6.6
gi|149363685 hypothetical protein LOC23379 [Homo sapiens] 28 8.6
gi|19913396 smoothelin isoform b [Homo sapiens] 28 8.6
gi|19913394 smoothelin isoform c [Homo sapiens] 28 8.6
gi|19913398 smoothelin isoform a [Homo sapiens] 28 8.6
>gi|239750999 PREDICTED: similar to hCG2045457 [Homo sapiens]
Length = 273
Score = 564 bits (1453), Expect = e-161
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 1 MPLDGCVLKVLFHRVLAETRDPSSFTKNVQKMKRVRDADLAVAALSRLRGKVWVKAWVSA 60
MPLDGCVLKVLFHRVLAETRDPSSFTKNVQKMKRVRDADLAVAALSRLRGKVWVKAWVSA
Sbjct: 1 MPLDGCVLKVLFHRVLAETRDPSSFTKNVQKMKRVRDADLAVAALSRLRGKVWVKAWVSA 60
Query: 61 DRRAAPLTVLWLGSRSIPEKLEANASRKPARGNQKVLLVKSDIPRWFLWTWFLALEVEVQ 120
DRRAAPLTVLWLGSRSIPEKLEANASRKPARGNQKVLLVKSDIPRWFLWTWFLALEVEVQ
Sbjct: 61 DRRAAPLTVLWLGSRSIPEKLEANASRKPARGNQKVLLVKSDIPRWFLWTWFLALEVEVQ 120
Query: 121 TAHAWHSMQSLPRLRVGEHVWEDPRLWPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLR 180
TAHAWHSMQSLPRLRVGEHVWEDPRLWPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLR
Sbjct: 121 TAHAWHSMQSLPRLRVGEHVWEDPRLWPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLR 180
Query: 181 RCHGVAHGSGVCEDLMVIATLERHEVQMKAPPRLSRAIADVTLESKTPTGNSTGSASAAS 240
RCHGVAHGSGVCEDLMVIATLERHEVQMKAPPRLSRAIADVTLESKTPTGNSTGSASAAS
Sbjct: 181 RCHGVAHGSGVCEDLMVIATLERHEVQMKAPPRLSRAIADVTLESKTPTGNSTGSASAAS 240
Query: 241 SPPAATYLPRGGEGPIHVEEAERWARRCHVPSF 273
SPPAATYLPRGGEGPIHVEEAERWARRCHVPSF
Sbjct: 241 SPPAATYLPRGGEGPIHVEEAERWARRCHVPSF 273
>gi|239745402 PREDICTED: similar to hCG2045457 [Homo sapiens]
Length = 273
Score = 564 bits (1453), Expect = e-161
Identities = 273/273 (100%), Positives = 273/273 (100%)
Query: 1 MPLDGCVLKVLFHRVLAETRDPSSFTKNVQKMKRVRDADLAVAALSRLRGKVWVKAWVSA 60
MPLDGCVLKVLFHRVLAETRDPSSFTKNVQKMKRVRDADLAVAALSRLRGKVWVKAWVSA
Sbjct: 1 MPLDGCVLKVLFHRVLAETRDPSSFTKNVQKMKRVRDADLAVAALSRLRGKVWVKAWVSA 60
Query: 61 DRRAAPLTVLWLGSRSIPEKLEANASRKPARGNQKVLLVKSDIPRWFLWTWFLALEVEVQ 120
DRRAAPLTVLWLGSRSIPEKLEANASRKPARGNQKVLLVKSDIPRWFLWTWFLALEVEVQ
Sbjct: 61 DRRAAPLTVLWLGSRSIPEKLEANASRKPARGNQKVLLVKSDIPRWFLWTWFLALEVEVQ 120
Query: 121 TAHAWHSMQSLPRLRVGEHVWEDPRLWPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLR 180
TAHAWHSMQSLPRLRVGEHVWEDPRLWPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLR
Sbjct: 121 TAHAWHSMQSLPRLRVGEHVWEDPRLWPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLR 180
Query: 181 RCHGVAHGSGVCEDLMVIATLERHEVQMKAPPRLSRAIADVTLESKTPTGNSTGSASAAS 240
RCHGVAHGSGVCEDLMVIATLERHEVQMKAPPRLSRAIADVTLESKTPTGNSTGSASAAS
Sbjct: 181 RCHGVAHGSGVCEDLMVIATLERHEVQMKAPPRLSRAIADVTLESKTPTGNSTGSASAAS 240
Query: 241 SPPAATYLPRGGEGPIHVEEAERWARRCHVPSF 273
SPPAATYLPRGGEGPIHVEEAERWARRCHVPSF
Sbjct: 241 SPPAATYLPRGGEGPIHVEEAERWARRCHVPSF 273
>gi|239756475 PREDICTED: similar to hCG2045457 [Homo sapiens]
Length = 337
Score = 471 bits (1211), Expect = e-133
Identities = 241/282 (85%), Positives = 242/282 (85%), Gaps = 17/282 (6%)
Query: 1 MPLDGCVLKVLFHRVLAETRDPSSFTKNVQKMKRVRDADLAVAALSRLRGKVWVKAWVSA 60
MPLDGCVLKVLFHRVLAETRDPSSFTKNVQKMKRVRDADLAVAALSRLRGKVWVKAWVSA
Sbjct: 1 MPLDGCVLKVLFHRVLAETRDPSSFTKNVQKMKRVRDADLAVAALSRLRGKVWVKAWVSA 60
Query: 61 DRRAAPLTVLWLGSRSIPEKLEANASRKPARGNQKVLLVKSDIPRWFLWTWFLALEVEVQ 120
DRRAAPLTVLWLGSRSIPEKLEANASRKPARGNQKVLLVKSDIPRWFLWTWFLALEVEVQ
Sbjct: 61 DRRAAPLTVLWLGSRSIPEKLEANASRKPARGNQKVLLVKSDIPRWFLWTWFLALEVEVQ 120
Query: 121 TAHAWHSMQSLPRLRVGEHVWEDPRLWPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLR 180
TAHAWHSMQSLPRLRVGEHVWEDPRLWPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLR
Sbjct: 121 TAHAWHSMQSLPRLRVGEHVWEDPRLWPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLR 180
Query: 181 RCHGVAHGSGVCEDLMVIATLERHEVQMKAPPRLSRAIADVTLESKTPTGN--------- 231
RCHGVAHGSGVCEDLMVIATLERHEVQMKAPPRLSRAIADVTLESKT G
Sbjct: 181 RCHGVAHGSGVCEDLMVIATLERHEVQMKAPPRLSRAIADVTLESKTALGRPVINRQLLG 240
Query: 232 ---STGSASAASSPPAATYLPRGGEGPIHV---EEAER--WA 265
S G T G EG HV E+AE WA
Sbjct: 241 ALLSKGREGLPGLEGEGTLASEGREGTGHVAIREDAEEGGWA 282
>gi|239755040 PREDICTED: hypothetical protein XP_002346201 [Homo
sapiens]
Length = 225
Score = 33.5 bits (75), Expect = 0.20
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 127 SMQSLPRLRVGEHVWEDPRLWPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLRRCHGVA 186
S +PRL W W P CWL++ G ++ DP R RR G
Sbjct: 117 SCDFVPRLSCSSSSWAGECFWGPTPGCWLIAAG--------GFRRRCDPGRRGRRTGGPG 168
Query: 187 HGSG 190
GSG
Sbjct: 169 RGSG 172
>gi|239749529 PREDICTED: hypothetical protein XP_002347078 [Homo
sapiens]
Length = 225
Score = 33.5 bits (75), Expect = 0.20
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 127 SMQSLPRLRVGEHVWEDPRLWPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLRRCHGVA 186
S +PRL W W P CWL++ G ++ DP R RR G
Sbjct: 117 SCDFVPRLSCSSSSWAGECFWGPTPGCWLIAAG--------GFRRRCDPGRRGRRTGGPG 168
Query: 187 HGSG 190
GSG
Sbjct: 169 RGSG 172
>gi|239743678 PREDICTED: hypothetical protein XP_002342943 [Homo
sapiens]
Length = 225
Score = 33.5 bits (75), Expect = 0.20
Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 8/64 (12%)
Query: 127 SMQSLPRLRVGEHVWEDPRLWPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLRRCHGVA 186
S +PRL W W P CWL++ G ++ DP R RR G
Sbjct: 117 SCDFVPRLSCSSSSWAGECFWGPTPGCWLIAAG--------GFRRRCDPGRRGRRTGGPG 168
Query: 187 HGSG 190
GSG
Sbjct: 169 RGSG 172
>gi|29336063 plexin B3 isoform 1 [Homo sapiens]
Length = 1909
Score = 30.4 bits (67), Expect = 1.7
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 7/67 (10%)
Query: 126 HSMQSLPRLRVGEHVWEDPRL--WPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLRRCH 183
H+ Q P L H + P + WPP LC L+ PP P G +F+ P L
Sbjct: 3 HAAQETPLL----HHFMAPVMARWPPFGLCLLLLLLSPPPLPLTGAHRFSAPNTTLNHL- 57
Query: 184 GVAHGSG 190
+A G G
Sbjct: 58 ALAPGRG 64
>gi|253795481 plexin B3 isoform 2 [Homo sapiens]
Length = 1932
Score = 30.0 bits (66), Expect = 2.3
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 147 WPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLRRCHGVAHGSG 190
WPP LC L+ PP P G +F+ P L +A G G
Sbjct: 45 WPPFGLCLLLLLLSPPPLPLTGAHRFSAPNTTLNHL-ALAPGRG 87
>gi|33350928 disabled homolog 1 [Homo sapiens]
Length = 555
Score = 29.6 bits (65), Expect = 3.0
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 17/133 (12%)
Query: 132 PRLRVGEHVWEDPRLWPPNALCWLVSRDPAPPAPTLGEQQFTDPARVLRRCHGVAHGSGV 191
PR ++G+ ++D ++ P + SR P P+ T + F+ + GVA +
Sbjct: 406 PRQKMGKETFKDFQMAQPPPV---PSRKPDQPSLTCTSEAFSSYFNKV----GVAQDTDD 458
Query: 192 CEDLMVIATLERHEVQMKAPPRLSRAIADVTLESKTP--TGNSTGSASAASSPPAATYLP 249
C+D + Q+ P S + + + P + S SAS AS P
Sbjct: 459 CDDFDIS--------QLNLTPVTSTTPSTNSPPTPAPRQSSPSKSSASHASDPTTDDIFE 510
Query: 250 RGGEGPIHVEEAE 262
G E P EE E
Sbjct: 511 EGFESPSKSEEQE 523
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 28.5 bits (62), Expect = 6.6
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 17/132 (12%)
Query: 148 PPNALCWLVSRDPAPPA----PTLGEQQFTDPARVLRRCHGVA--------HGSGVCEDL 195
PP L W R P PP PT G + P L G + G G +
Sbjct: 1891 PPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGLGGSDGE 1950
Query: 196 MVIATLERHEVQMKAPPRLSRAIA-----DVTLESKTPTGNSTGSASAASSPPAATYLPR 250
+ + + +AP LS +++ DV+ E+ P + +S+P + T +
Sbjct: 1951 PASGSPKGGTPKSQAPLDLSLSLSLSLSPDVSTEASPPRASQDIPCLDSSAPESGTPMGA 2010
Query: 251 GGEGPIHVEEAE 262
G+ P +EE E
Sbjct: 2011 LGDWPAPIEERE 2022
>gi|208431824 forkhead box I3 [Homo sapiens]
Length = 420
Score = 28.5 bits (62), Expect = 6.6
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 210 APPRLSRAIADVTLESKTPTGNSTGSASAASSP-PAAT 246
+P +S A AD TL+ T NSTG S+ SP PA+T
Sbjct: 354 SPTSISEASAD-TLQLSNSTSNSTGQRSSYYSPFPAST 390
>gi|149192845 ubiquitin specific protease 24 [Homo sapiens]
Length = 2460
Score = 28.5 bits (62), Expect = 6.6
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 217 AIADVTLESKTPTGNSTGSASAASSPPAATYLPRGGEGPIHVEE 260
A A L K +G+S GS S+ ++ +L +G E P+ + E
Sbjct: 2407 AYATALLNEKEQSGSSNGSESSPANENGDRHLQQGSESPMMIGE 2450
>gi|149363685 hypothetical protein LOC23379 [Homo sapiens]
Length = 2266
Score = 28.1 bits (61), Expect = 8.6
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 223 LESKTPTGNSTGSASAASSP-PAATYLPRGGEGPI 256
L+ K+P +TGS+S AS P P A L G PI
Sbjct: 1299 LKEKSPFRETTGSSSHASEPTPQAAALDTEGSSPI 1333
>gi|19913396 smoothelin isoform b [Homo sapiens]
Length = 915
Score = 28.1 bits (61), Expect = 8.6
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 202 ERHEVQMKA--------PPRLSRAIADVTLESKTPTGNSTGSASAASSPPAATYLPRGGE 253
ER E + +A P S+ + VTL + P G+++ S ++ SS P P E
Sbjct: 160 EREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPT----PASPE 215
Query: 254 GPIHVEEAE 262
P+ EA+
Sbjct: 216 PPLEPAEAQ 224
>gi|19913394 smoothelin isoform c [Homo sapiens]
Length = 917
Score = 28.1 bits (61), Expect = 8.6
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 202 ERHEVQMKA--------PPRLSRAIADVTLESKTPTGNSTGSASAASSPPAATYLPRGGE 253
ER E + +A P S+ + VTL + P G+++ S ++ SS P P E
Sbjct: 160 EREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPT----PASPE 215
Query: 254 GPIHVEEAE 262
P+ EA+
Sbjct: 216 PPLEPAEAQ 224
>gi|19913398 smoothelin isoform a [Homo sapiens]
Length = 940
Score = 28.1 bits (61), Expect = 8.6
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 202 ERHEVQMKA--------PPRLSRAIADVTLESKTPTGNSTGSASAASSPPAATYLPRGGE 253
ER E + +A P S+ + VTL + P G+++ S ++ SS P P E
Sbjct: 160 EREEQEQQAEVSKPTPTPEGTSQDVTTVTLLLRAPPGSTSSSPASPSSSPT----PASPE 215
Query: 254 GPIHVEEAE 262
P+ EA+
Sbjct: 216 PPLEPAEAQ 224
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.132 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,809,570
Number of Sequences: 37866
Number of extensions: 551835
Number of successful extensions: 2174
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2164
Number of HSP's gapped (non-prelim): 20
length of query: 273
length of database: 18,247,518
effective HSP length: 101
effective length of query: 172
effective length of database: 14,423,052
effective search space: 2480764944
effective search space used: 2480764944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.