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Search of human proteins with 239749883
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749883 PREDICTED: hypothetical protein XP_002347194 [Homo
sapiens]
(94 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749883 PREDICTED: hypothetical protein XP_002347194 [Homo ... 197 1e-51
gi|239744185 PREDICTED: hypothetical protein XP_002343050 [Homo ... 197 1e-51
gi|239755431 PREDICTED: hypothetical protein [Homo sapiens] 195 6e-51
gi|169161029 PREDICTED: hypothetical protein [Homo sapiens] 34 0.029
gi|145207994 hairy and enhancer of split 7 [Homo sapiens] 32 0.11
gi|27735129 hypothetical protein LOC148345 [Homo sapiens] 32 0.14
gi|46409372 G protein-coupled receptor 153 [Homo sapiens] 30 0.42
gi|239756689 PREDICTED: WD repeat domain 81 [Homo sapiens] 30 0.54
gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens] 30 0.54
gi|169167975 PREDICTED: hypothetical protein LOC100129566 [Homo ... 30 0.54
gi|239745674 PREDICTED: WD repeat domain 81 [Homo sapiens] 30 0.54
gi|169167690 PREDICTED: hypothetical protein LOC100129566 [Homo ... 30 0.54
gi|226437602 NK1 homeobox 2 [Homo sapiens] 29 0.71
gi|5730027 KH domain containing, RNA binding, signal transductio... 29 0.71
gi|14602439 Williams Beuren syndrome chromosome region 14 isofor... 29 0.93
gi|14602437 Williams Beuren syndrome chromosome region 14 isofor... 29 0.93
gi|14602435 Williams Beuren syndrome chromosome region 14 isofor... 29 0.93
gi|14602433 Williams Beuren syndrome chromosome region 14 isofor... 29 0.93
gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens] 28 1.2
gi|239751736 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens] 28 1.2
gi|169172040 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo ... 28 1.2
gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens] 28 1.2
gi|169170042 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|239509115 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2
gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo s... 28 1.2
gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens] 28 1.2
gi|166795280 forkhead box N4 [Homo sapiens] 28 1.2
gi|91208418 transcription elongation regulator 1 isoform 2 [Homo... 28 1.2
>gi|239749883 PREDICTED: hypothetical protein XP_002347194 [Homo
sapiens]
Length = 94
Score = 197 bits (502), Expect = 1e-51
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MPTPELAEDGGNWKSGGLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR 60
MPTPELAEDGGNWKSGGLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR
Sbjct: 1 MPTPELAEDGGNWKSGGLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR 60
Query: 61 WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA 94
WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA
Sbjct: 61 WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA 94
>gi|239744185 PREDICTED: hypothetical protein XP_002343050 [Homo
sapiens]
Length = 94
Score = 197 bits (502), Expect = 1e-51
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MPTPELAEDGGNWKSGGLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR 60
MPTPELAEDGGNWKSGGLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR
Sbjct: 1 MPTPELAEDGGNWKSGGLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR 60
Query: 61 WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA 94
WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA
Sbjct: 61 WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA 94
>gi|239755431 PREDICTED: hypothetical protein [Homo sapiens]
Length = 94
Score = 195 bits (496), Expect = 6e-51
Identities = 93/94 (98%), Positives = 93/94 (98%)
Query: 1 MPTPELAEDGGNWKSGGLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR 60
MPTPELAEDGGNWKSGGLQP PHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR
Sbjct: 1 MPTPELAEDGGNWKSGGLQPYPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLR 60
Query: 61 WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA 94
WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA
Sbjct: 61 WQRGGDDPGAGDEGKPGLAGMQRLVMSAPLATAA 94
>gi|169161029 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 33.9 bits (76), Expect = 0.029
Identities = 33/93 (35%), Positives = 42/93 (45%), Gaps = 17/93 (18%)
Query: 9 DGGNWKSGGLQPSPHT-----LAPATRPLLKP---SARYLSPGLSVLFPAAAWAVLPGLR 60
+GG GGL+PSP APA KP S R L VL P +LPGL
Sbjct: 122 EGGRSPGGGLEPSPGARGAVGAAPAAARHRKPRGRSRRAPQMPLRVLPP-----ILPGLS 176
Query: 61 WQRGGDDPGAGDEGK---PGLAGMQRLVMSAPL 90
+ GG G G G+ PG +G+Q + P+
Sbjct: 177 -RAGGATGGRGLPGRRGLPGRSGLQGAAVPPPV 208
>gi|145207994 hairy and enhancer of split 7 [Homo sapiens]
Length = 225
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/50 (38%), Positives = 20/50 (40%)
Query: 27 PATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKP 76
PA RP L P+A L P L P P W P AGD G P
Sbjct: 141 PAPRPSLDPAAPALGPALHQRPPVHQGHPSPRCAWSPSLCSPRAGDSGAP 190
>gi|27735129 hypothetical protein LOC148345 [Homo sapiens]
Length = 656
Score = 31.6 bits (70), Expect = 0.14
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 34 KPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKPGLAGMQRLVMSAPLA 91
+PS PGLS+L A P +R DP A P L GM R+ ++APLA
Sbjct: 480 EPSQDIEGPGLSILPARDATFSTPSVRQP----DPSAWLSSGPELTGMPRVRLAAPLA 533
>gi|46409372 G protein-coupled receptor 153 [Homo sapiens]
Length = 609
Score = 30.0 bits (66), Expect = 0.42
Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 2 PTPELAEDGGNWKSGGLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLRW 61
P A DG + PS +P RP A L PGLS A+W GLR
Sbjct: 523 PAAPAAPDGADPGEAPTPPSSAQRSPGPRPSAHSHAGSLRPGLS-----ASWGEPGGLRA 577
Query: 62 QRGG 65
GG
Sbjct: 578 AGGG 581
>gi|239756689 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 1941
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 36 SARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGK 75
S+ SPGL L + A A PG R + G DPG G+EG+
Sbjct: 681 SSSQASPGL--LSFSVASASRPGRRNKAAGADPGEGEEGR 718
>gi|239751186 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 2240
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 36 SARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGK 75
S+ SPGL L + A A PG R + G DPG G+EG+
Sbjct: 980 SSSQASPGL--LSFSVASASRPGRRNKAAGADPGEGEEGR 1017
>gi|169167975 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 17 GLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDP 68
G+ P+PH PA P++ P + PG PG+R GG P
Sbjct: 90 GMMPAPHMRGPAMMPMMGPPPPGMMPG----------GPAPGMRPLMGGHRP 131
>gi|239745674 PREDICTED: WD repeat domain 81 [Homo sapiens]
Length = 1941
Score = 29.6 bits (65), Expect = 0.54
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 36 SARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGK 75
S+ SPGL L + A A PG R + G DPG G+EG+
Sbjct: 681 SSSQASPGL--LSFSVASASRPGRRNKAAGADPGEGEEGR 718
>gi|169167690 PREDICTED: hypothetical protein LOC100129566 [Homo
sapiens]
Length = 155
Score = 29.6 bits (65), Expect = 0.54
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 17 GLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDP 68
G+ P+PH PA P++ P + PG PG+R GG P
Sbjct: 90 GMMPAPHMRGPAMMPMMGPPPPGMMPG----------GPAPGMRPLMGGHRP 131
>gi|226437602 NK1 homeobox 2 [Homo sapiens]
Length = 310
Score = 29.3 bits (64), Expect = 0.71
Identities = 24/80 (30%), Positives = 30/80 (37%), Gaps = 3/80 (3%)
Query: 1 MPTPELAEDGGNWKS---GGLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLP 57
+ TP+ A G S G RP L+ A L PGL+ A A A+
Sbjct: 68 LETPDAAGPGAGQASPLEGSEAEEEEDAEDPRRPRLRERAARLLPGLARSPDAPAGALAS 127
Query: 58 GLRWQRGGDDPGAGDEGKPG 77
G + GG P G PG
Sbjct: 128 GEPCEDGGGGPVRSPPGSPG 147
>gi|5730027 KH domain containing, RNA binding, signal transduction
associated 1 [Homo sapiens]
Length = 443
Score = 29.3 bits (64), Expect = 0.71
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 2 PTPELAEDGGNWKSGGLQPSPHTLAPATRPLLKPSA 37
P P + GG GG + SP T P PLL PSA
Sbjct: 39 PLPHRSRGGGGGSRGGARASPATQPP---PLLPPSA 71
>gi|14602439 Williams Beuren syndrome chromosome region 14 isoform
delta [Homo sapiens]
Length = 831
Score = 28.9 bits (63), Expect = 0.93
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 20 PSPHTLAPATRPLLKPSARYLSP 42
P P TLAP+ RPLL P A LSP
Sbjct: 582 PGPATLAPS-RPLLVPKAERLSP 603
>gi|14602437 Williams Beuren syndrome chromosome region 14 isoform
gamma [Homo sapiens]
Length = 850
Score = 28.9 bits (63), Expect = 0.93
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 20 PSPHTLAPATRPLLKPSARYLSP 42
P P TLAP+ RPLL P A LSP
Sbjct: 582 PGPATLAPS-RPLLVPKAERLSP 603
>gi|14602435 Williams Beuren syndrome chromosome region 14 isoform
beta [Homo sapiens]
Length = 833
Score = 28.9 bits (63), Expect = 0.93
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 20 PSPHTLAPATRPLLKPSARYLSP 42
P P TLAP+ RPLL P A LSP
Sbjct: 582 PGPATLAPS-RPLLVPKAERLSP 603
>gi|14602433 Williams Beuren syndrome chromosome region 14 isoform
alpha [Homo sapiens]
Length = 852
Score = 28.9 bits (63), Expect = 0.93
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 20 PSPHTLAPATRPLLKPSARYLSP 42
P P TLAP+ RPLL P A LSP
Sbjct: 582 PGPATLAPS-RPLLVPKAERLSP 603
>gi|239755439 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 30 RPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKPG 77
RP L+ A L PGL+ A A A+ G + GG P G PG
Sbjct: 122 RPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPG 169
>gi|239751736 PREDICTED: hypothetical protein [Homo sapiens]
Length = 261
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 2 PTPELAEDGGNWKSGGLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLRW 61
P+ DGG SG QP+ T+ A R L P R L S P A L G RW
Sbjct: 151 PSAGGGRDGGVAVSGRDQPAARTMLAARRQRLGPGRRELLMARSFPDPILARPELHG-RW 209
Query: 62 QRGGDDPG-AGDEGKPG 77
PG AG PG
Sbjct: 210 ------PGPAGTPAPPG 220
>gi|239749920 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 30 RPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKPG 77
RP L+ A L PGL+ A A A+ G + GG P G PG
Sbjct: 122 RPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPG 169
>gi|169172040 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 14 KSGGLQPSPHTLAPATRPLL---------KPSARYLSPGLSVLFPAAAWAVLPGLRWQRG 64
++GGL+ L A+ P L + R PG + L P VL G RW+R
Sbjct: 59 RTGGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPG----VLSGPRWRRV 114
Query: 65 GDDPGAGDEGKPGLAGMQRLVM 86
D G PG + RL++
Sbjct: 115 PDSRARGAAPAPGSPALNRLIL 136
>gi|239746237 PREDICTED: hypothetical protein XP_002343710 [Homo
sapiens]
Length = 261
Score = 28.5 bits (62), Expect = 1.2
Identities = 28/77 (36%), Positives = 31/77 (40%), Gaps = 8/77 (10%)
Query: 2 PTPELAEDGGNWKSGGLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLRW 61
P+ DGG SG QP+ T+ A R L P R L S P A L G RW
Sbjct: 151 PSAGGGRDGGVAVSGRDQPAARTMLAARRQRLGPGRRELLMARSFPDPILARPELHG-RW 209
Query: 62 QRGGDDPG-AGDEGKPG 77
PG AG PG
Sbjct: 210 ------PGPAGTPAPPG 220
>gi|239744223 PREDICTED: NK1 homeobox 2 [Homo sapiens]
Length = 332
Score = 28.5 bits (62), Expect = 1.2
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 30 RPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDPGAGDEGKPG 77
RP L+ A L PGL+ A A A+ G + GG P G PG
Sbjct: 122 RPRLRERAARLLPGLARSPDAPAGALASGEPCEDGGGGPVRSPPGSPG 169
>gi|169170042 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 14 KSGGLQPSPHTLAPATRPLL---------KPSARYLSPGLSVLFPAAAWAVLPGLRWQRG 64
++GGL+ L A+ P L + R PG + L P VL G RW+R
Sbjct: 59 RTGGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPG----VLSGPRWRRV 114
Query: 65 GDDPGAGDEGKPGLAGMQRLVM 86
D G PG + RL++
Sbjct: 115 PDSRARGAAPAPGSPALNRLIL 136
>gi|239509115 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 28.5 bits (62), Expect = 1.2
Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 14 KSGGLQPSPHTLAPATRPLL---------KPSARYLSPGLSVLFPAAAWAVLPGLRWQRG 64
++GGL+ L A+ P L + R PG + L P VL G RW+R
Sbjct: 59 RTGGLRGESWGLRKASVPELGTCWGEARPRRCPRPRCPGRTGLVPG----VLSGPRWRRV 114
Query: 65 GDDPGAGDEGKPGLAGMQRLVM 86
D G PG + RL++
Sbjct: 115 PDSRARGAAPAPGSPALNRLIL 136
>gi|4507127 small nuclear ribonucleoprotein polypeptide C [Homo
sapiens]
Length = 159
Score = 28.5 bits (62), Expect = 1.2
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 10/52 (19%)
Query: 17 GLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGLRWQRGGDDP 68
G+ P+PH P P++ P PG+ + PA PG+R GG P
Sbjct: 90 GMMPAPHMGGPPMMPMMGPP----PPGMMPVGPA------PGMRPPMGGHMP 131
>gi|116256354 alpha 2 type IV collagen preproprotein [Homo sapiens]
Length = 1712
Score = 28.5 bits (62), Expect = 1.2
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 12/74 (16%)
Query: 17 GLQPSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAV----LPGLRWQRG--GDDPGA 70
GL+ P P+ +P L Y PGL FP A LPG+ + G GD
Sbjct: 818 GLKGQPGLPGPSGQPGL-----YGPPGLHG-FPGAPGQEGPLGLPGIPGREGLPGDRGDP 871
Query: 71 GDEGKPGLAGMQRL 84
GD G PG GM+ L
Sbjct: 872 GDTGAPGPVGMKGL 885
>gi|166795280 forkhead box N4 [Homo sapiens]
Length = 517
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 11 GNWKSGGLQPSPHTLAPATRPL--LKPSARYLSP 42
G S GLQ PH +PAT+P L P A+ P
Sbjct: 126 GGQPSSGLQDPPHLYSPATQPQFPLPPGAQQCPP 159
>gi|91208418 transcription elongation regulator 1 isoform 2 [Homo
sapiens]
Length = 1077
Score = 28.5 bits (62), Expect = 1.2
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 20 PSPHTLAPATRPLLKPSARYLSPGLSVLFPAAAWAVLPGL 59
P P T PA P++ P R PG+ + P VLPG+
Sbjct: 349 PQPTTAIPAFPPVMVPPFRVPLPGMPIPLP----GVLPGM 384
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.431
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,280,919
Number of Sequences: 37866
Number of extensions: 302169
Number of successful extensions: 941
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 135
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.