BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239749742 PREDICTED: hypothetical protein XP_002347147 [Homo sapiens] (133 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239755261 PREDICTED: hypothetical protein [Homo sapiens] 293 4e-80 gi|239749742 PREDICTED: hypothetical protein XP_002347147 [Homo ... 293 4e-80 gi|239743997 PREDICTED: hypothetical protein XP_002343013 [Homo ... 293 4e-80 gi|76496497 artemis protein isoform a [Homo sapiens] 200 3e-52 gi|76496495 artemis protein isoform b [Homo sapiens] 200 3e-52 gi|76496501 artemis protein isoform c [Homo sapiens] 200 3e-52 gi|76496499 artemis protein isoform d [Homo sapiens] 200 3e-52 gi|223278374 DNA cross-link repair 1A [Homo sapiens] 34 0.030 gi|65288071 tensin 3 [Homo sapiens] 29 1.3 gi|57222563 colonic and hepatic tumor over-expressed protein iso... 29 1.3 gi|57164942 colonic and hepatic tumor over-expressed protein iso... 29 1.3 gi|38787970 tensin like C1 domain containing phosphatase isoform... 27 3.7 gi|38787957 tensin like C1 domain containing phosphatase isoform... 27 3.7 gi|38787941 tensin like C1 domain containing phosphatase isoform... 27 3.7 gi|12383082 DNA cross-link repair 1B (PSO2 homolog, S. cerevisia... 27 4.8 gi|170932467 phytoceramidase, alkaline [Homo sapiens] 27 4.8 gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 27 6.3 gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 27 6.3 >gi|239755261 PREDICTED: hypothetical protein [Homo sapiens] Length = 133 Score = 293 bits (749), Expect = 4e-80 Identities = 133/133 (100%), Positives = 133/133 (100%) Query: 1 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV 60 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV Sbjct: 1 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV 60 Query: 61 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN 120 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN Sbjct: 61 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN 120 Query: 121 TQIHAWWHPKVHV 133 TQIHAWWHPKVHV Sbjct: 121 TQIHAWWHPKVHV 133 >gi|239749742 PREDICTED: hypothetical protein XP_002347147 [Homo sapiens] Length = 133 Score = 293 bits (749), Expect = 4e-80 Identities = 133/133 (100%), Positives = 133/133 (100%) Query: 1 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV 60 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV Sbjct: 1 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV 60 Query: 61 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN 120 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN Sbjct: 61 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN 120 Query: 121 TQIHAWWHPKVHV 133 TQIHAWWHPKVHV Sbjct: 121 TQIHAWWHPKVHV 133 >gi|239743997 PREDICTED: hypothetical protein XP_002343013 [Homo sapiens] Length = 133 Score = 293 bits (749), Expect = 4e-80 Identities = 133/133 (100%), Positives = 133/133 (100%) Query: 1 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV 60 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV Sbjct: 1 MELSCTQGTSDWCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELV 60 Query: 61 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN 120 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN Sbjct: 61 QSWITQSLYHVVWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRN 120 Query: 121 TQIHAWWHPKVHV 133 TQIHAWWHPKVHV Sbjct: 121 TQIHAWWHPKVHV 133 >gi|76496497 artemis protein isoform a [Homo sapiens] Length = 692 Score = 200 bits (508), Expect = 3e-52 Identities = 93/103 (90%), Positives = 97/103 (94%) Query: 28 DIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHVVWLNCKAAYGYEYLFT 87 DIQSVYLDT CDPRFYQIPS+EECL GVLELV+SWIT+S YHVVWLNCKAAYGYEYLFT Sbjct: 158 DIQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFT 217 Query: 88 NLSEELGVQIHVNKLDMFRNMPEILHHLTTDRNTQIHAWWHPK 130 NLSEELGVQ+HVNKLDMFRNMPEILHHLTTDRNTQIHA HPK Sbjct: 218 NLSEELGVQVHVNKLDMFRNMPEILHHLTTDRNTQIHACRHPK 260 >gi|76496495 artemis protein isoform b [Homo sapiens] Length = 577 Score = 200 bits (508), Expect = 3e-52 Identities = 93/103 (90%), Positives = 97/103 (94%) Query: 28 DIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHVVWLNCKAAYGYEYLFT 87 DIQSVYLDT CDPRFYQIPS+EECL GVLELV+SWIT+S YHVVWLNCKAAYGYEYLFT Sbjct: 43 DIQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFT 102 Query: 88 NLSEELGVQIHVNKLDMFRNMPEILHHLTTDRNTQIHAWWHPK 130 NLSEELGVQ+HVNKLDMFRNMPEILHHLTTDRNTQIHA HPK Sbjct: 103 NLSEELGVQVHVNKLDMFRNMPEILHHLTTDRNTQIHACRHPK 145 >gi|76496501 artemis protein isoform c [Homo sapiens] Length = 572 Score = 200 bits (508), Expect = 3e-52 Identities = 93/103 (90%), Positives = 97/103 (94%) Query: 28 DIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHVVWLNCKAAYGYEYLFT 87 DIQSVYLDT CDPRFYQIPS+EECL GVLELV+SWIT+S YHVVWLNCKAAYGYEYLFT Sbjct: 38 DIQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFT 97 Query: 88 NLSEELGVQIHVNKLDMFRNMPEILHHLTTDRNTQIHAWWHPK 130 NLSEELGVQ+HVNKLDMFRNMPEILHHLTTDRNTQIHA HPK Sbjct: 98 NLSEELGVQVHVNKLDMFRNMPEILHHLTTDRNTQIHACRHPK 140 >gi|76496499 artemis protein isoform d [Homo sapiens] Length = 572 Score = 200 bits (508), Expect = 3e-52 Identities = 93/103 (90%), Positives = 97/103 (94%) Query: 28 DIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHVVWLNCKAAYGYEYLFT 87 DIQSVYLDT CDPRFYQIPS+EECL GVLELV+SWIT+S YHVVWLNCKAAYGYEYLFT Sbjct: 38 DIQSVYLDTTFCDPRFYQIPSREECLSGVLELVRSWITRSPYHVVWLNCKAAYGYEYLFT 97 Query: 88 NLSEELGVQIHVNKLDMFRNMPEILHHLTTDRNTQIHAWWHPK 130 NLSEELGVQ+HVNKLDMFRNMPEILHHLTTDRNTQIHA HPK Sbjct: 98 NLSEELGVQVHVNKLDMFRNMPEILHHLTTDRNTQIHACRHPK 140 >gi|223278374 DNA cross-link repair 1A [Homo sapiens] Length = 1040 Score = 34.3 bits (77), Expect = 0.030 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 6/94 (6%) Query: 29 IQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHVVWLNCKAAYGYEYLFTN 88 + +YLDT C P Y PSQ+E + + +T + H + + + G E +F Sbjct: 832 VHMLYLDTTYCSPE-YTFPSQQEVIRFAINTAFEAVTLN-PHALVVCGTYSIGKEKVFLA 889 Query: 89 LSEELGVQIHVN----KLDMFRNMPEILHHLTTD 118 +++ LG ++ ++ K N+PEI +TTD Sbjct: 890 IADVLGSKVGMSQEKYKTLQCLNIPEINSLITTD 923 >gi|65288071 tensin 3 [Homo sapiens] Length = 1445 Score = 28.9 bits (63), Expect = 1.3 Identities = 9/29 (31%), Positives = 18/29 (62%) Query: 53 LCGVLELVQSWITQSLYHVVWLNCKAAYG 81 +C + + +SW+ +L HVV ++C+ G Sbjct: 84 MCTICKAQESWLNSNLQHVVVIHCRGGKG 112 >gi|57222563 colonic and hepatic tumor over-expressed protein isoform b [Homo sapiens] Length = 1972 Score = 28.9 bits (63), Expect = 1.3 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 23/100 (23%) Query: 16 KLLEWSFCTPGAD-IQSVYLDTMLCDPRFYQ---------------------IPSQEECL 53 K+L+W+F TP + I+ + C ++ Q + S++E + Sbjct: 1179 KVLKWNFTTPRDEYIEQLKTQMSSCVAKWLQDEMFHSDFQHHNKALAVMVDHLESEKEGV 1238 Query: 54 CGVLELVQSWITQSLYHV-VWLNCKAAYGYEYLFTNLSEE 92 G L+L+ W+T + + KA + LFT LSEE Sbjct: 1239 IGCLDLILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEE 1278 >gi|57164942 colonic and hepatic tumor over-expressed protein isoform a [Homo sapiens] Length = 2032 Score = 28.9 bits (63), Expect = 1.3 Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 23/100 (23%) Query: 16 KLLEWSFCTPGAD-IQSVYLDTMLCDPRFYQ---------------------IPSQEECL 53 K+L+W+F TP + I+ + C ++ Q + S++E + Sbjct: 1179 KVLKWNFTTPRDEYIEQLKTQMSSCVAKWLQDEMFHSDFQHHNKALAVMVDHLESEKEGV 1238 Query: 54 CGVLELVQSWITQSLYHV-VWLNCKAAYGYEYLFTNLSEE 92 G L+L+ W+T + + KA + LFT LSEE Sbjct: 1239 IGCLDLILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEE 1278 >gi|38787970 tensin like C1 domain containing phosphatase isoform 3 [Homo sapiens] Length = 1285 Score = 27.3 bits (59), Expect = 3.7 Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 53 LCGVLELVQSWITQSLYHVVWLNCKAAYG 81 LC + + +++W++ HVV L CK G Sbjct: 84 LCSICKAMETWLSADPQHVVVLYCKGNKG 112 >gi|38787957 tensin like C1 domain containing phosphatase isoform 2 [Homo sapiens] Length = 1409 Score = 27.3 bits (59), Expect = 3.7 Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 53 LCGVLELVQSWITQSLYHVVWLNCKAAYG 81 LC + + +++W++ HVV L CK G Sbjct: 208 LCSICKAMETWLSADPQHVVVLYCKGNKG 236 >gi|38787941 tensin like C1 domain containing phosphatase isoform 1 [Homo sapiens] Length = 1419 Score = 27.3 bits (59), Expect = 3.7 Identities = 10/29 (34%), Positives = 17/29 (58%) Query: 53 LCGVLELVQSWITQSLYHVVWLNCKAAYG 81 LC + + +++W++ HVV L CK G Sbjct: 218 LCSICKAMETWLSADPQHVVVLYCKGNKG 246 >gi|12383082 DNA cross-link repair 1B (PSO2 homolog, S. cerevisiae) [Homo sapiens] Length = 532 Score = 26.9 bits (58), Expect = 4.8 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Query: 24 TPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQ 61 T G I ++YLD C+P +PS++E +++L++ Sbjct: 134 TLGKQIHTLYLDNTNCNPALV-LPSRQEAAHQIVQLIR 170 >gi|170932467 phytoceramidase, alkaline [Homo sapiens] Length = 267 Score = 26.9 bits (58), Expect = 4.8 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 28/109 (25%) Query: 29 IQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHVVWLN-CKAAYGYE---- 83 + +VYL +P F+Q+ + G+L V + + +S+Y V W+ GY Sbjct: 132 VTTVYLKVK--EPIFHQV------MYGML--VFTLVLRSIYIVTWVYPWLRGLGYTSLGI 181 Query: 84 ----YLFTNLSEELGVQIHVNKLDMFRNMPEILHHLTTDRNTQIHAWWH 128 +LF N+ I L FR + +TT Q HAWWH Sbjct: 182 FLLGFLFWNIDN-----IFCESLRNFRKKVPPIIGITT----QFHAWWH 221 >gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5 [Homo sapiens] Length = 6907 Score = 26.6 bits (57), Expect = 6.3 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 18/99 (18%) Query: 12 WCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHV 71 WC+E EW F + + +++ LD + QEE L + + ++ T+ L + Sbjct: 3463 WCEELKQEWKFVSEEIEREAIILDNL-----------QEE-LPEISKTKEAATTEELSEL 3510 Query: 72 VWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPE 110 L+C YG ++L + + + ++ +N+PE Sbjct: 3511 --LDCLCQYGENV----EKQQLLLTLLLQRIRSIQNVPE 3543 >gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1 [Homo sapiens] Length = 6885 Score = 26.6 bits (57), Expect = 6.3 Identities = 22/99 (22%), Positives = 45/99 (45%), Gaps = 18/99 (18%) Query: 12 WCKEKLLEWSFCTPGADIQSVYLDTMLCDPRFYQIPSQEECLCGVLELVQSWITQSLYHV 71 WC+E EW F + + +++ LD + QEE L + + ++ T+ L + Sbjct: 3463 WCEELKQEWKFVSEEIEREAIILDNL-----------QEE-LPEISKTKEAATTEELSEL 3510 Query: 72 VWLNCKAAYGYEYLFTNLSEELGVQIHVNKLDMFRNMPE 110 L+C YG ++L + + + ++ +N+PE Sbjct: 3511 --LDCLCQYGENV----EKQQLLLTLLLQRIRSIQNVPE 3543 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.324 0.136 0.469 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,750,999 Number of Sequences: 37866 Number of extensions: 229280 Number of successful extensions: 545 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 533 Number of HSP's gapped (non-prelim): 19 length of query: 133 length of database: 18,247,518 effective HSP length: 91 effective length of query: 42 effective length of database: 14,801,712 effective search space: 621671904 effective search space used: 621671904 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.