Guide to the Human Genome
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Name: SLMO2 Sequence: fasta or formatted (194aa) NCBI GI: 117553615
Description:

slowmo homolog 2

Referenced in:

Mitochondria

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         16           4
 C cysteine            0.0          0           0
 D aspartate           3.6          7           1
 E glutamate           8.2         16           2
 F phenylalanine       1.5          3           1
 G glycine             4.1          8           1
 H histidine           4.1          8           1
 I isoleucine          6.2         12           2
 K lysine              6.7         13           1
 L leucine             7.2         14           2
 M methionine          4.1          8           1
 N asparagine          3.1          6           1
 P proline             5.7         11           1
 Q glutamine           2.1          4           1
 R arginine            3.6          7           1
 S serine              9.8         19           2
 T threonine           8.8         17           2
 V valine              8.8         17           2
 W tryptophan          2.1          4           1
 Y tyrosine            2.1          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   slowmo homolog 2 
SLMO1                 0.638   slowmo homolog 1 isoform 1 
SLMO1                 0.638   slowmo homolog 1 isoform 1 
LOC100128687          0.218   PREDICTED: similar to slowmo homolog 1 
LOC100289790          0.218   PREDICTED: hypothetical protein XP_002347060 
LOC100289606          0.218   PREDICTED: hypothetical protein XP_002342914 
PRELID1               0.155   PRELI domain containing 1 
PRELID2               0.133   PRELI domain containing 2 isoform b 
SEC14L1               0.122   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L1               0.122   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L1               0.122   SEC14 (S. cerevisiae)-like 1 isoform b 
SEC14L1               0.122   SEC14 (S. cerevisiae)-like 1 isoform a 
PRELID2               0.116   PRELI domain containing 2 isoform a 
SEC14L5               0.099   SEC14-like 5 
SEC14L1               0.086   SEC14 (S. cerevisiae)-like 1 isoform c 
MUC16                 0.022   mucin 16 
RAI14                 0.022   retinoic acid induced 14 isoform d 
RAI14                 0.022   retinoic acid induced 14 isoform c 
RAI14                 0.022   retinoic acid induced 14 isoform b 
RAI14                 0.022   retinoic acid induced 14 isoform a 
RAI14                 0.022   retinoic acid induced 14 isoform a 
RAI14                 0.022   retinoic acid induced 14 isoform a 
EHD4                  0.011   EH-domain containing 4 
PHKA2                 0.008   phosphorylase kinase, alpha 2 (liver) 
ANK3                  0.008   ankyrin 3 isoform 1 
C4orf17               0.008   hypothetical protein LOC84103 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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