Guide to the Human Genome
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Name: LOC100289606 Sequence: fasta or formatted (184aa) NCBI GI: 239743604
Description:

PREDICTED: hypothetical protein XP_002342914

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9          9           2
 C cysteine            2.2          4           2
 D aspartate           1.6          3           1
 E glutamate           5.4         10           1
 F phenylalanine       1.6          3           1
 G glycine             4.3          8           2
 H histidine           4.3          8           1
 I isoleucine          8.7         16           2
 K lysine              7.1         13           3
 L leucine            13.6         25           2
 M methionine          4.3          8           1
 N asparagine          4.9          9           2
 P proline             3.3          6           1
 Q glutamine           4.9          9           2
 R arginine            4.9          9           2
 S serine              6.5         12           2
 T threonine           7.1         13           2
 V valine              5.4         10           1
 W tryptophan          1.6          3           1
 Y tyrosine            3.3          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342914 
LOC100289790          1.000   PREDICTED: hypothetical protein XP_002347060 
LOC100128687          0.723   PREDICTED: similar to slowmo homolog 1 
SLMO1                 0.321   slowmo homolog 1 isoform 1 
SLMO1                 0.321   slowmo homolog 1 isoform 1 
SLMO2                 0.228   slowmo homolog 2 
LOC100131514          0.014   PREDICTED: similar to hCG1747327, partial 
DGKK                  0.006   diacylglycerol kinase kappa 
ABCA10                0.006   ATP-binding cassette, sub-family A, member 10 [Homo...
UBE3B                 0.006   ubiquitin protein ligase E3B 
UBE3B                 0.006   ubiquitin protein ligase E3B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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