Guide to the Human Genome
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Name: SLMO1 Sequence: fasta or formatted (172aa) NCBI GI: 215490114
Description:

slowmo homolog 1 isoform 1

Referenced in:

Mitochondria

Other entries for this name:
alt mRNA [172aa] slowmo homolog 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.2          9           2
 C cysteine            0.6          1           1
 D aspartate           2.3          4           1
 E glutamate           7.6         13           1
 F phenylalanine       0.6          1           1
 G glycine             5.2          9           1
 H histidine           3.5          6           1
 I isoleucine          7.0         12           2
 K lysine              4.1          7           2
 L leucine            10.5         18           2
 M methionine          3.5          6           1
 N asparagine          4.7          8           1
 P proline             5.2          9           1
 Q glutamine           1.7          3           1
 R arginine            5.8         10           2
 S serine             10.5         18           2
 T threonine           7.6         13           1
 V valine              9.3         16           2
 W tryptophan          2.9          5           1
 Y tyrosine            2.3          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   slowmo homolog 1 isoform 1 
SLMO1                 1.000   slowmo homolog 1 isoform 1 
SLMO2                 0.720   slowmo homolog 2 
LOC100128687          0.346   PREDICTED: similar to slowmo homolog 1 
LOC100289790          0.346   PREDICTED: hypothetical protein XP_002347060 
LOC100289606          0.346   PREDICTED: hypothetical protein XP_002342914 
PRELID2               0.150   PRELI domain containing 2 isoform b 
PRELID2               0.146   PRELI domain containing 2 isoform a 
SEC14L1               0.137   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L1               0.137   SEC14 (S. cerevisiae)-like 1 isoform a 
SEC14L1               0.137   SEC14 (S. cerevisiae)-like 1 isoform b 
SEC14L1               0.137   SEC14 (S. cerevisiae)-like 1 isoform a 
PRELID1               0.134   PRELI domain containing 1 
SEC14L5               0.109   SEC14-like 5 
SEC14L1               0.090   SEC14 (S. cerevisiae)-like 1 isoform c 
YTHDC2                0.016   YTH domain containing 2 
ACE                   0.009   angiotensin I converting enzyme 1 isoform 1 precursor...
ACE                   0.009   angiotensin I converting enzyme 1 isoform 2 precurso...
PTX3                  0.009   pentraxin 3 
BAI3                  0.009   brain-specific angiogenesis inhibitor 3 
BAI2                  0.006   brain-specific angiogenesis inhibitor 2 
E2F3                  0.006   E2F transcription factor 3 
LOC100288919          0.006   PREDICTED: hypothetical protein XP_002344286 
MICALL1               0.006   molecule interacting with Rab13 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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