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Search of human proteins with 239749342
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749342 PREDICTED: hypothetical protein XP_002347001 [Homo
sapiens]
(236 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754813 PREDICTED: hypothetical protein [Homo sapiens] 501 e-142
gi|239749342 PREDICTED: hypothetical protein XP_002347001 [Homo ... 501 e-142
gi|239743430 PREDICTED: hypothetical protein XP_002342854 [Homo ... 501 e-142
gi|215820619 zinc finger protein 646 [Homo sapiens] 30 2.4
gi|194239645 spinster homolog 3 [Homo sapiens] 30 2.4
gi|21314764 Fc receptor-like 3 precursor [Homo sapiens] 29 3.1
gi|194688142 SEBOX homeobox isoform 1 [Homo sapiens] 29 3.1
gi|140972151 SEBOX homeobox isoform 2 [Homo sapiens] 29 3.1
gi|207450723 zinc finger protein 577 isoform a [Homo sapiens] 29 4.0
gi|169790973 parkin isoform 3 [Homo sapiens] 28 5.3
gi|169790971 parkin isoform 2 [Homo sapiens] 28 5.3
gi|169790969 parkin isoform 1 [Homo sapiens] 28 5.3
gi|89191868 von Willebrand factor preproprotein [Homo sapiens] 28 5.3
gi|153946395 tenascin C precursor [Homo sapiens] 28 5.3
gi|207450725 zinc finger protein 577 isoform b [Homo sapiens] 28 5.3
gi|124001558 ubiquitin specific peptidase 54 [Homo sapiens] 28 5.3
gi|116063558 tet oncogene family member 2 isoform b [Homo sapiens] 28 6.9
gi|187761317 tet oncogene family member 2 isoform a [Homo sapiens] 28 6.9
gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens] 28 9.0
gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens] 28 9.0
gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens] 28 9.0
>gi|239754813 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 501 bits (1291), Expect = e-142
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MCDQLSAHTGHHSDASCSFGTSTQHSCLCQAYFPISRLGKRLHWPAAEADAGMSLGLACW 60
MCDQLSAHTGHHSDASCSFGTSTQHSCLCQAYFPISRLGKRLHWPAAEADAGMSLGLACW
Sbjct: 1 MCDQLSAHTGHHSDASCSFGTSTQHSCLCQAYFPISRLGKRLHWPAAEADAGMSLGLACW 60
Query: 61 GGAMSGIFSPCLYTLTVTSIFSPPYLFLMLMLYLPESSEVTPLMVMLTYLACSTFTEKCS 120
GGAMSGIFSPCLYTLTVTSIFSPPYLFLMLMLYLPESSEVTPLMVMLTYLACSTFTEKCS
Sbjct: 61 GGAMSGIFSPCLYTLTVTSIFSPPYLFLMLMLYLPESSEVTPLMVMLTYLACSTFTEKCS 120
Query: 121 LSWMSWSFLNQITSGSGFPNTVQVRFKVFGRKRLVEKEELEKGKSCHPLGRCGLRCHPGI 180
LSWMSWSFLNQITSGSGFPNTVQVRFKVFGRKRLVEKEELEKGKSCHPLGRCGLRCHPGI
Sbjct: 121 LSWMSWSFLNQITSGSGFPNTVQVRFKVFGRKRLVEKEELEKGKSCHPLGRCGLRCHPGI 180
Query: 181 RVNTCMHARCPEPGPHSLQLGRYPSLGCSCTKVAMSRGSAATFNPNPSLELPMLAF 236
RVNTCMHARCPEPGPHSLQLGRYPSLGCSCTKVAMSRGSAATFNPNPSLELPMLAF
Sbjct: 181 RVNTCMHARCPEPGPHSLQLGRYPSLGCSCTKVAMSRGSAATFNPNPSLELPMLAF 236
>gi|239749342 PREDICTED: hypothetical protein XP_002347001 [Homo
sapiens]
Length = 236
Score = 501 bits (1291), Expect = e-142
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MCDQLSAHTGHHSDASCSFGTSTQHSCLCQAYFPISRLGKRLHWPAAEADAGMSLGLACW 60
MCDQLSAHTGHHSDASCSFGTSTQHSCLCQAYFPISRLGKRLHWPAAEADAGMSLGLACW
Sbjct: 1 MCDQLSAHTGHHSDASCSFGTSTQHSCLCQAYFPISRLGKRLHWPAAEADAGMSLGLACW 60
Query: 61 GGAMSGIFSPCLYTLTVTSIFSPPYLFLMLMLYLPESSEVTPLMVMLTYLACSTFTEKCS 120
GGAMSGIFSPCLYTLTVTSIFSPPYLFLMLMLYLPESSEVTPLMVMLTYLACSTFTEKCS
Sbjct: 61 GGAMSGIFSPCLYTLTVTSIFSPPYLFLMLMLYLPESSEVTPLMVMLTYLACSTFTEKCS 120
Query: 121 LSWMSWSFLNQITSGSGFPNTVQVRFKVFGRKRLVEKEELEKGKSCHPLGRCGLRCHPGI 180
LSWMSWSFLNQITSGSGFPNTVQVRFKVFGRKRLVEKEELEKGKSCHPLGRCGLRCHPGI
Sbjct: 121 LSWMSWSFLNQITSGSGFPNTVQVRFKVFGRKRLVEKEELEKGKSCHPLGRCGLRCHPGI 180
Query: 181 RVNTCMHARCPEPGPHSLQLGRYPSLGCSCTKVAMSRGSAATFNPNPSLELPMLAF 236
RVNTCMHARCPEPGPHSLQLGRYPSLGCSCTKVAMSRGSAATFNPNPSLELPMLAF
Sbjct: 181 RVNTCMHARCPEPGPHSLQLGRYPSLGCSCTKVAMSRGSAATFNPNPSLELPMLAF 236
>gi|239743430 PREDICTED: hypothetical protein XP_002342854 [Homo
sapiens]
Length = 236
Score = 501 bits (1291), Expect = e-142
Identities = 236/236 (100%), Positives = 236/236 (100%)
Query: 1 MCDQLSAHTGHHSDASCSFGTSTQHSCLCQAYFPISRLGKRLHWPAAEADAGMSLGLACW 60
MCDQLSAHTGHHSDASCSFGTSTQHSCLCQAYFPISRLGKRLHWPAAEADAGMSLGLACW
Sbjct: 1 MCDQLSAHTGHHSDASCSFGTSTQHSCLCQAYFPISRLGKRLHWPAAEADAGMSLGLACW 60
Query: 61 GGAMSGIFSPCLYTLTVTSIFSPPYLFLMLMLYLPESSEVTPLMVMLTYLACSTFTEKCS 120
GGAMSGIFSPCLYTLTVTSIFSPPYLFLMLMLYLPESSEVTPLMVMLTYLACSTFTEKCS
Sbjct: 61 GGAMSGIFSPCLYTLTVTSIFSPPYLFLMLMLYLPESSEVTPLMVMLTYLACSTFTEKCS 120
Query: 121 LSWMSWSFLNQITSGSGFPNTVQVRFKVFGRKRLVEKEELEKGKSCHPLGRCGLRCHPGI 180
LSWMSWSFLNQITSGSGFPNTVQVRFKVFGRKRLVEKEELEKGKSCHPLGRCGLRCHPGI
Sbjct: 121 LSWMSWSFLNQITSGSGFPNTVQVRFKVFGRKRLVEKEELEKGKSCHPLGRCGLRCHPGI 180
Query: 181 RVNTCMHARCPEPGPHSLQLGRYPSLGCSCTKVAMSRGSAATFNPNPSLELPMLAF 236
RVNTCMHARCPEPGPHSLQLGRYPSLGCSCTKVAMSRGSAATFNPNPSLELPMLAF
Sbjct: 181 RVNTCMHARCPEPGPHSLQLGRYPSLGCSCTKVAMSRGSAATFNPNPSLELPMLAF 236
>gi|215820619 zinc finger protein 646 [Homo sapiens]
Length = 1832
Score = 29.6 bits (65), Expect = 2.4
Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 3 DQLSAHTGHHSDASCSFGTSTQH--SCLCQAYFPISRLGKRLHWPAAEADAGMSLG 56
D L A H + TS Q CLC FP R G RLH A + +GM+ G
Sbjct: 858 DSLPALRSHFQNHRPGEATSAQPFLCCLCGMIFP-GRAGYRLHRRQAHSSSGMTEG 912
>gi|194239645 spinster homolog 3 [Homo sapiens]
Length = 512
Score = 29.6 bits (65), Expect = 2.4
Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 186 MHARCPEPGPHSLQLGRYPSLGCSC 210
M A CPEPGP LQ G+ P G C
Sbjct: 5 MSAECPEPGPGGLQ-GQSPGPGRQC 28
>gi|21314764 Fc receptor-like 3 precursor [Homo sapiens]
Length = 734
Score = 29.3 bits (64), Expect = 3.1
Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 8 HTGHHS-DASCSFGTSTQHSCLCQAYFPISRLGKRLHWPAAEADAGMSLGLACWGGAMSG 66
H+G++S DA G H + P+SR L P A+A G L L C ++ G
Sbjct: 445 HSGNYSCDADNGLGAQHSHGVSLRVTVPVSRPVLTLRAPGAQAVVGDLLELHC--ESLRG 502
Query: 67 IFSPCLY 73
F P LY
Sbjct: 503 SF-PILY 508
>gi|194688142 SEBOX homeobox isoform 1 [Homo sapiens]
Length = 216
Score = 29.3 bits (64), Expect = 3.1
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 181 RVNTCMHARCPEPGPHSLQLGRYPSLGCSCTKVAMSRGSAATFNPNPSLE 230
R + C H+ CP P G P G K GSA +PSLE
Sbjct: 147 RTSVCRHSSCPAP-------GLSPRQGWEGAKAVAPWGSAGASEVHPSLE 189
>gi|140972151 SEBOX homeobox isoform 2 [Homo sapiens]
Length = 215
Score = 29.3 bits (64), Expect = 3.1
Identities = 17/50 (34%), Positives = 20/50 (40%), Gaps = 7/50 (14%)
Query: 181 RVNTCMHARCPEPGPHSLQLGRYPSLGCSCTKVAMSRGSAATFNPNPSLE 230
R + C H+ CP P G P G K GSA +PSLE
Sbjct: 146 RTSVCRHSSCPAP-------GLSPRQGWEGAKAVAPWGSAGASEVHPSLE 188
>gi|207450723 zinc finger protein 577 isoform a [Homo sapiens]
Length = 485
Score = 28.9 bits (63), Expect = 4.0
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 129 LNQITSGSGFPNTVQVRFKVFGRK-RLVEKEELEKGKSCHPLGRCG 173
L +I +G G P+ V + F RK +L++ + E+G+ H G CG
Sbjct: 148 LQKICAG-GKPHECSVCGRAFSRKAQLIQHQRTERGEKPHGCGECG 192
>gi|169790973 parkin isoform 3 [Homo sapiens]
Length = 316
Score = 28.5 bits (62), Expect = 5.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 175 RCHPGIRVNT-CMHARCPEPGPHSLQLGRYPSLGCSCTKVAM 215
RCH + N CMH +CP+P +L + GC +V M
Sbjct: 271 RCHVPVEKNGGCMHMKCPQP---QCRLEWCWNCGCEWNRVCM 309
>gi|169790971 parkin isoform 2 [Homo sapiens]
Length = 437
Score = 28.5 bits (62), Expect = 5.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 175 RCHPGIRVNT-CMHARCPEPGPHSLQLGRYPSLGCSCTKVAM 215
RCH + N CMH +CP+P +L + GC +V M
Sbjct: 392 RCHVPVEKNGGCMHMKCPQP---QCRLEWCWNCGCEWNRVCM 430
>gi|169790969 parkin isoform 1 [Homo sapiens]
Length = 465
Score = 28.5 bits (62), Expect = 5.3
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 175 RCHPGIRVNT-CMHARCPEPGPHSLQLGRYPSLGCSCTKVAM 215
RCH + N CMH +CP+P +L + GC +V M
Sbjct: 420 RCHVPVEKNGGCMHMKCPQP---QCRLEWCWNCGCEWNRVCM 458
>gi|89191868 von Willebrand factor preproprotein [Homo sapiens]
Length = 2813
Score = 28.5 bits (62), Expect = 5.3
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 172 CGLRCHPGIRVNTCMHARCPEPGPHSL-QLGRYPSLGCSC 210
C + C P + N C H CP ++ G +PS GC C
Sbjct: 2199 CAMSCPPSLVYNHCEHG-CPRHCDGNVSSCGDHPSEGCFC 2237
>gi|153946395 tenascin C precursor [Homo sapiens]
Length = 2201
Score = 28.5 bits (62), Expect = 5.3
Identities = 14/36 (38%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 159 ELEKGKSCHPLGRC---GLRCHPGIRVNTCMHARCP 191
EL CH GRC CH G C RCP
Sbjct: 529 ELSCPNDCHGQGRCVNGQCVCHEGFMGKDCKEQRCP 564
>gi|207450725 zinc finger protein 577 isoform b [Homo sapiens]
Length = 426
Score = 28.5 bits (62), Expect = 5.3
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 130 NQITSGSGFPNTVQVRFKVFGRK-RLVEKEELEKGKSCHPLGRCG 173
+QI G G P+ V + F RK +L++ + E+G+ H G CG
Sbjct: 90 SQICPG-GKPHECSVCGRAFSRKAQLIQHQRTERGEKPHGCGECG 133
>gi|124001558 ubiquitin specific peptidase 54 [Homo sapiens]
Length = 1684
Score = 28.5 bits (62), Expect = 5.3
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Query: 176 CHPGIRVNTCMHARCPEPGPHSLQLGRYPSLGCSCTKVAMSRGSAATFNP 225
CHP + V + CP+P + Q + SL S T + + RGS T+ P
Sbjct: 1072 CHPIMPVASSFVLHCPDPVQKTNQCLQGQSLKTSLT-LKVDRGSEETYRP 1120
>gi|116063558 tet oncogene family member 2 isoform b [Homo sapiens]
Length = 1165
Score = 28.1 bits (61), Expect = 6.9
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 151 RKRLVEKEELEKGK-----SCHPLGRCGLRCHPGIRVNTCMHARCPE 192
R L++K+E ++ + SCH ++ PG + + CMH PE
Sbjct: 953 RWHLLQKQEQQQTQQPQTESCHSQMHRPIKVEPGCKPHACMHTAPPE 999
>gi|187761317 tet oncogene family member 2 isoform a [Homo sapiens]
Length = 2002
Score = 28.1 bits (61), Expect = 6.9
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 151 RKRLVEKEELEKGK-----SCHPLGRCGLRCHPGIRVNTCMHARCPE 192
R L++K+E ++ + SCH ++ PG + + CMH PE
Sbjct: 953 RWHLLQKQEQQQTQQPQTESCHSQMHRPIKVEPGCKPHACMHTAPPE 999
>gi|169178458 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3874
Score = 27.7 bits (60), Expect = 9.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 160 LEKGKSCHPLGRCGLRCHPGIRVNTCMHARCPEPGPHS 197
L+ G P G GL+ PG RV T AR + G +S
Sbjct: 821 LKDGNPVSPAGTPGLQVFPGGRVLTLASARASDSGRYS 858
>gi|239749684 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 5065
Score = 27.7 bits (60), Expect = 9.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 160 LEKGKSCHPLGRCGLRCHPGIRVNTCMHARCPEPGPHS 197
L+ G P G GL+ PG RV T AR + G +S
Sbjct: 2012 LKDGNPVSPAGTPGLQVFPGGRVLTLASARASDSGRYS 2049
>gi|169177000 PREDICTED: hemicentin 2 [Homo sapiens]
Length = 3783
Score = 27.7 bits (60), Expect = 9.0
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 160 LEKGKSCHPLGRCGLRCHPGIRVNTCMHARCPEPGPHS 197
L+ G P G GL+ PG RV T AR + G +S
Sbjct: 730 LKDGNPVSPAGTPGLQVFPGGRVLTLASARASDSGRYS 767
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.135 0.449
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,425,560
Number of Sequences: 37866
Number of extensions: 493755
Number of successful extensions: 1512
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1501
Number of HSP's gapped (non-prelim): 27
length of query: 236
length of database: 18,247,518
effective HSP length: 99
effective length of query: 137
effective length of database: 14,498,784
effective search space: 1986333408
effective search space used: 1986333408
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.