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Search of human proteins with 239749147
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239749147 PREDICTED: hypothetical protein XP_002346925 [Homo
sapiens]
(44 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239749147 PREDICTED: hypothetical protein XP_002346925 [Homo ... 92 1e-19
gi|239758160 PREDICTED: hypothetical protein [Homo sapiens] 90 3e-19
gi|239743173 PREDICTED: similar to solute carrier family 29 (nuc... 90 3e-19
gi|239508837 PREDICTED: similar to solute carrier family 29 (nuc... 90 3e-19
gi|100913034 solute carrier family 29 (nucleoside transporters),... 90 4e-19
gi|100913032 solute carrier family 29 (nucleoside transporters),... 90 4e-19
gi|239743192 PREDICTED: similar to solute carrier family 29 (nuc... 88 1e-18
gi|239508861 PREDICTED: similar to solute carrier family 29 (nuc... 88 1e-18
gi|238776801 SVH protein isoform f [Homo sapiens] 26 6.0
gi|238776799 SVH protein isoform d [Homo sapiens] 26 6.0
gi|238776797 SVH protein isoform e [Homo sapiens] 26 6.0
gi|238776795 SVH protein isoform c [Homo sapiens] 26 6.0
gi|238776793 SVH protein isoform b [Homo sapiens] 26 6.0
gi|31377663 SVH protein isoform a [Homo sapiens] 26 6.0
gi|169165524 PREDICTED: similar to SVH protein isoform 2 [Homo s... 26 6.0
gi|169165522 PREDICTED: similar to SVH protein isoform 1 [Homo s... 26 6.0
gi|113415138 PREDICTED: similar to SVH protein isoform 2 [Homo s... 26 6.0
gi|169165931 PREDICTED: similar to SVH protein isoform 1 [Homo s... 26 6.0
gi|169165133 PREDICTED: similar to SVH protein isoform 1 [Homo s... 26 6.0
gi|113414573 PREDICTED: similar to SVH protein isoform 2 [Homo s... 26 6.0
gi|29540566 armadillo repeat containing, X-linked 3 [Homo sapiens] 26 7.8
gi|29540564 armadillo repeat containing, X-linked 3 [Homo sapiens] 26 7.8
gi|7705274 armadillo repeat containing, X-linked 3 [Homo sapiens] 26 7.8
gi|108796649 hypothetical protein LOC283677 [Homo sapiens] 26 7.8
>gi|239749147 PREDICTED: hypothetical protein XP_002346925 [Homo
sapiens]
Length = 44
Score = 91.7 bits (226), Expect = 1e-19
Identities = 44/44 (100%), Positives = 44/44 (100%)
Query: 1 MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL
Sbjct: 1 MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
>gi|239758160 PREDICTED: hypothetical protein [Homo sapiens]
Length = 44
Score = 90.1 bits (222), Expect = 3e-19
Identities = 43/44 (97%), Positives = 44/44 (100%)
Query: 1 MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
MTVSY+SGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL
Sbjct: 1 MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
>gi|239743173 PREDICTED: similar to solute carrier family 29
(nucleoside transporters), member 4 [Homo sapiens]
Length = 414
Score = 90.1 bits (222), Expect = 3e-19
Identities = 43/44 (97%), Positives = 44/44 (100%)
Query: 1 MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
MTVSY+SGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL
Sbjct: 371 MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 414
>gi|239508837 PREDICTED: similar to solute carrier family 29
(nucleoside transporters), member 4 [Homo sapiens]
Length = 414
Score = 90.1 bits (222), Expect = 3e-19
Identities = 43/44 (97%), Positives = 44/44 (100%)
Query: 1 MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
MTVSY+SGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL
Sbjct: 371 MTVSYVSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 414
>gi|100913034 solute carrier family 29 (nucleoside transporters),
member 4 [Homo sapiens]
Length = 530
Score = 89.7 bits (221), Expect = 4e-19
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSIL GL
Sbjct: 487 MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILAGL 530
>gi|100913032 solute carrier family 29 (nucleoside transporters),
member 4 [Homo sapiens]
Length = 530
Score = 89.7 bits (221), Expect = 4e-19
Identities = 43/44 (97%), Positives = 43/44 (97%)
Query: 1 MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSIL GL
Sbjct: 487 MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILAGL 530
>gi|239743192 PREDICTED: similar to solute carrier family 29
(nucleoside transporters), member 4 [Homo sapiens]
Length = 329
Score = 88.2 bits (217), Expect = 1e-18
Identities = 42/44 (95%), Positives = 44/44 (100%)
Query: 1 MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
MTVSYMSGLTLGSAVAYC+YSLTR+AHGSCLHASTANGSILTGL
Sbjct: 286 MTVSYMSGLTLGSAVAYCSYSLTRNAHGSCLHASTANGSILTGL 329
>gi|239508861 PREDICTED: similar to solute carrier family 29
(nucleoside transporters), member 4 [Homo sapiens]
Length = 329
Score = 88.2 bits (217), Expect = 1e-18
Identities = 42/44 (95%), Positives = 44/44 (100%)
Query: 1 MTVSYMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILTGL 44
MTVSYMSGLTLGSAVAYC+YSLTR+AHGSCLHASTANGSILTGL
Sbjct: 286 MTVSYMSGLTLGSAVAYCSYSLTRNAHGSCLHASTANGSILTGL 329
>gi|238776801 SVH protein isoform f [Homo sapiens]
Length = 225
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL LG+ YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29
>gi|238776799 SVH protein isoform d [Homo sapiens]
Length = 249
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL LG+ YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29
>gi|238776797 SVH protein isoform e [Homo sapiens]
Length = 284
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL LG+ YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29
>gi|238776795 SVH protein isoform c [Homo sapiens]
Length = 284
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL LG+ YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29
>gi|238776793 SVH protein isoform b [Homo sapiens]
Length = 308
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL LG+ YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29
>gi|31377663 SVH protein isoform a [Homo sapiens]
Length = 343
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL LG+ YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29
>gi|169165524 PREDICTED: similar to SVH protein isoform 2 [Homo
sapiens]
Length = 253
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL LG+ YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29
>gi|169165522 PREDICTED: similar to SVH protein isoform 1 [Homo
sapiens]
Length = 284
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL LG+ YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29
>gi|113415138 PREDICTED: similar to SVH protein isoform 2 [Homo
sapiens]
Length = 253
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL LG+ YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29
>gi|169165931 PREDICTED: similar to SVH protein isoform 1 [Homo
sapiens]
Length = 284
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL LG+ YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29
>gi|169165133 PREDICTED: similar to SVH protein isoform 1 [Homo
sapiens]
Length = 253
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL LG+ YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29
>gi|113414573 PREDICTED: similar to SVH protein isoform 2 [Homo
sapiens]
Length = 284
Score = 26.2 bits (56), Expect = 6.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL LG+ YC Y LTR
Sbjct: 12 AGLLLGAGACYCIYRLTR 29
>gi|29540566 armadillo repeat containing, X-linked 3 [Homo
sapiens]
Length = 379
Score = 25.8 bits (55), Expect = 7.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL +G+ YC Y LTR
Sbjct: 12 AGLVIGAGACYCIYRLTR 29
>gi|29540564 armadillo repeat containing, X-linked 3 [Homo
sapiens]
Length = 379
Score = 25.8 bits (55), Expect = 7.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL +G+ YC Y LTR
Sbjct: 12 AGLVIGAGACYCIYRLTR 29
>gi|7705274 armadillo repeat containing, X-linked 3 [Homo sapiens]
Length = 379
Score = 25.8 bits (55), Expect = 7.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 7 SGLTLGSAVAYCTYSLTR 24
+GL +G+ YC Y LTR
Sbjct: 12 AGLVIGAGACYCIYRLTR 29
>gi|108796649 hypothetical protein LOC283677 [Homo sapiens]
Length = 266
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/36 (47%), Positives = 17/36 (47%), Gaps = 7/36 (19%)
Query: 8 GLTLGSAV-------AYCTYSLTRDAHGSCLHASTA 36
GLT G A A C S TRD G CL A TA
Sbjct: 12 GLTGGEAAEWPLQRYARCIPSNTRDPPGPCLEAGTA 47
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.126 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,351,106
Number of Sequences: 37866
Number of extensions: 27468
Number of successful extensions: 90
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 67
Number of HSP's gapped (non-prelim): 24
length of query: 44
length of database: 18,247,518
effective HSP length: 18
effective length of query: 26
effective length of database: 17,565,930
effective search space: 456714180
effective search space used: 456714180
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.