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Search of human proteins with 239748736
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239748736 PREDICTED: hypothetical protein XP_002346785 [Homo
sapiens]
(141 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754214 PREDICTED: similar to leucocyte elastase inhibitor ... 295 6e-81
gi|239748736 PREDICTED: hypothetical protein XP_002346785 [Homo ... 295 6e-81
gi|239742782 PREDICTED: hypothetical protein XP_002342650 [Homo ... 295 6e-81
gi|47157325 protein kinase C, delta [Homo sapiens] 37 0.005
gi|31377782 protein kinase C, delta [Homo sapiens] 37 0.005
gi|5031877 lamin B1 [Homo sapiens] 30 0.66
gi|111955139 GTP-binding protein 10 isoform 2 [Homo sapiens] 30 0.66
gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Hom... 29 1.5
gi|122891872 microcephalin [Homo sapiens] 28 1.9
gi|74027251 tripartite motif-containing 33 protein isoform beta ... 28 1.9
gi|74027249 tripartite motif-containing 33 protein isoform alpha... 28 1.9
gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens] 28 1.9
gi|6912372 forkhead box D3 [Homo sapiens] 28 2.5
gi|7706515 photoreceptor-specific nuclear receptor isoform a [Ho... 27 4.3
gi|7657395 photoreceptor-specific nuclear receptor isoform b [Ho... 27 4.3
gi|60685227 SECIS binding protein 2-like [Homo sapiens] 27 4.3
gi|222446611 R-spondin family, member 2 [Homo sapiens] 27 5.6
gi|42794265 MAS-related GPR, member D [Homo sapiens] 27 5.6
gi|239753832 PREDICTED: hypothetical protein XP_002345793 [Homo ... 27 7.3
gi|239748395 PREDICTED: hypothetical protein XP_002346654 [Homo ... 27 7.3
gi|239742323 PREDICTED: hypothetical protein XP_002342491 [Homo ... 27 7.3
gi|150378528 G protein-coupled receptor associated sorting prote... 26 9.5
gi|150378489 G protein-coupled receptor associated sorting prote... 26 9.5
gi|103472136 G protein-coupled receptor associated sorting prote... 26 9.5
gi|10863935 reticulon 1 isoform A [Homo sapiens] 26 9.5
gi|6912676 SKI-interacting protein [Homo sapiens] 26 9.5
>gi|239754214 PREDICTED: similar to leucocyte elastase inhibitor
[Homo sapiens]
Length = 141
Score = 295 bits (756), Expect = 6e-81
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MGPLFLNCHHCTDKATWVAGTLWSVRGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDE 60
MGPLFLNCHHCTDKATWVAGTLWSVRGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDE
Sbjct: 1 MGPLFLNCHHCTDKATWVAGTLWSVRGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDE 60
Query: 61 EKEGVVGAEAGDESGTPHHHDGSCGGCSLRAFLIDLHKRLVHDLGQRQVCLGHSREVCLA 120
EKEGVVGAEAGDESGTPHHHDGSCGGCSLRAFLIDLHKRLVHDLGQRQVCLGHSREVCLA
Sbjct: 61 EKEGVVGAEAGDESGTPHHHDGSCGGCSLRAFLIDLHKRLVHDLGQRQVCLGHSREVCLA 120
Query: 121 QLEGISHAQVAQDTLHVVAFL 141
QLEGISHAQVAQDTLHVVAFL
Sbjct: 121 QLEGISHAQVAQDTLHVVAFL 141
>gi|239748736 PREDICTED: hypothetical protein XP_002346785 [Homo
sapiens]
Length = 141
Score = 295 bits (756), Expect = 6e-81
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MGPLFLNCHHCTDKATWVAGTLWSVRGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDE 60
MGPLFLNCHHCTDKATWVAGTLWSVRGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDE
Sbjct: 1 MGPLFLNCHHCTDKATWVAGTLWSVRGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDE 60
Query: 61 EKEGVVGAEAGDESGTPHHHDGSCGGCSLRAFLIDLHKRLVHDLGQRQVCLGHSREVCLA 120
EKEGVVGAEAGDESGTPHHHDGSCGGCSLRAFLIDLHKRLVHDLGQRQVCLGHSREVCLA
Sbjct: 61 EKEGVVGAEAGDESGTPHHHDGSCGGCSLRAFLIDLHKRLVHDLGQRQVCLGHSREVCLA 120
Query: 121 QLEGISHAQVAQDTLHVVAFL 141
QLEGISHAQVAQDTLHVVAFL
Sbjct: 121 QLEGISHAQVAQDTLHVVAFL 141
>gi|239742782 PREDICTED: hypothetical protein XP_002342650 [Homo
sapiens]
Length = 141
Score = 295 bits (756), Expect = 6e-81
Identities = 141/141 (100%), Positives = 141/141 (100%)
Query: 1 MGPLFLNCHHCTDKATWVAGTLWSVRGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDE 60
MGPLFLNCHHCTDKATWVAGTLWSVRGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDE
Sbjct: 1 MGPLFLNCHHCTDKATWVAGTLWSVRGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDE 60
Query: 61 EKEGVVGAEAGDESGTPHHHDGSCGGCSLRAFLIDLHKRLVHDLGQRQVCLGHSREVCLA 120
EKEGVVGAEAGDESGTPHHHDGSCGGCSLRAFLIDLHKRLVHDLGQRQVCLGHSREVCLA
Sbjct: 61 EKEGVVGAEAGDESGTPHHHDGSCGGCSLRAFLIDLHKRLVHDLGQRQVCLGHSREVCLA 120
Query: 121 QLEGISHAQVAQDTLHVVAFL 141
QLEGISHAQVAQDTLHVVAFL
Sbjct: 121 QLEGISHAQVAQDTLHVVAFL 141
>gi|47157325 protein kinase C, delta [Homo sapiens]
Length = 676
Score = 37.0 bits (84), Expect = 0.005
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 6 LNCHH-CTDKATWVAGTLWSVRGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDEEKEG 64
+N HH C +K + G + E L+ T +SRR +A+ E PVG+ E+K G
Sbjct: 266 MNVHHKCREKVANLCGINQKLLA---EALNQVTQRASRRSDSASSE-PVGIYQGFEKKTG 321
Query: 65 VVGAEAGDESGTPHHHDGSCGGCSLRAFLIDLHKRL 100
V G + D SGT C++ F+ HK L
Sbjct: 322 VAGEDMQDNSGTYGKIWEGSSKCNINNFI--FHKVL 355
>gi|31377782 protein kinase C, delta [Homo sapiens]
Length = 676
Score = 37.0 bits (84), Expect = 0.005
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 6 LNCHH-CTDKATWVAGTLWSVRGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDEEKEG 64
+N HH C +K + G + E L+ T +SRR +A+ E PVG+ E+K G
Sbjct: 266 MNVHHKCREKVANLCGINQKLLA---EALNQVTQRASRRSDSASSE-PVGIYQGFEKKTG 321
Query: 65 VVGAEAGDESGTPHHHDGSCGGCSLRAFLIDLHKRL 100
V G + D SGT C++ F+ HK L
Sbjct: 322 VAGEDMQDNSGTYGKIWEGSSKCNINNFI--FHKVL 355
>gi|5031877 lamin B1 [Homo sapiens]
Length = 586
Score = 30.0 bits (66), Expect = 0.66
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Query: 22 LWSVRGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDEEKEG-------VVGAEAGDES 74
+W + G G K L + +G+ A+ + V + EE+E VV E +
Sbjct: 514 IWKNQNSWGTGEDVKVILKNSQGEEVAQRSTVFKTTIPEEEEEEEEAAGVVVEEELFHQQ 573
Query: 75 GTPHHHDGSC 84
GTP + SC
Sbjct: 574 GTPRASNRSC 583
>gi|111955139 GTP-binding protein 10 isoform 2 [Homo sapiens]
Length = 387
Score = 30.0 bits (66), Expect = 0.66
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 30 GEGLHTK-TALSSRRGKAAAEENPVGLAVLDEEKEGVVGAEAGDESGTPHHHDGSCGGCS 88
G G ++K +AL +GK PVG++V DE G + E E+ G GG
Sbjct: 70 GVGANSKISALKGSKGKDCEIPVPVGISVTDE--NGKIIGELNKENDRILVAQGGLGGKL 127
Query: 89 LRAFL-IDLHKRLVH 102
L FL + KR++H
Sbjct: 128 LTNFLPLKGQKRIIH 142
>gi|21361458 Rho guanine nucleotide exchange factor (GEF) 17 [Homo
sapiens]
Length = 2063
Score = 28.9 bits (63), Expect = 1.5
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 27 GQRGEGLHTKTALSSRRGKAAAEENPVGLAVLD------EEKEGVVGAEAGDESGTPHHH 80
G+ GE + + +R +AA E P G +V K G+ A DE T H
Sbjct: 725 GEAGEAYRSLSDPIPQRHRAATSEEPTGFSVDSNLLGSLSPKTGLPATSAMDEGLTSGHS 784
Query: 81 DGSCG 85
D S G
Sbjct: 785 DWSVG 789
>gi|122891872 microcephalin [Homo sapiens]
Length = 835
Score = 28.5 bits (62), Expect = 1.9
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 6/81 (7%)
Query: 25 VRGQRGEGLHTKTALSSRRGKAAAEENPV-----GLAVLDEEKEGVVGAEAGDESGTPHH 79
++ + +G +K + SS G+A +E P + EEKE + G +G P
Sbjct: 558 LKSTQNKGTTSKISNSSE-GEAQSEHEPCFIVDCNMETSTEEKENLPGGYSGSVKNRPTR 616
Query: 80 HDGSCGGCSLRAFLIDLHKRL 100
HD C LI H+ L
Sbjct: 617 HDVLDDSCDGFKDLIKPHEEL 637
>gi|74027251 tripartite motif-containing 33 protein isoform beta
[Homo sapiens]
Length = 1110
Score = 28.5 bits (62), Expect = 1.9
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 30 GEGLHTKTALSSRRGKAAAEENPVGLAVLDEEKEGVVGAEAGDESGTPHHHDGSCGGCS 88
G G + + G AA E P AVL EE+E G AG E G DG S
Sbjct: 14 GGGSGSAPVTAGAAGPAAQEAEPPLTAVLVEEEEEE-GGRAGAEGGAAGPDDGGVAAAS 71
>gi|74027249 tripartite motif-containing 33 protein isoform alpha
[Homo sapiens]
Length = 1127
Score = 28.5 bits (62), Expect = 1.9
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 30 GEGLHTKTALSSRRGKAAAEENPVGLAVLDEEKEGVVGAEAGDESGTPHHHDGSCGGCS 88
G G + + G AA E P AVL EE+E G AG E G DG S
Sbjct: 14 GGGSGSAPVTAGAAGPAAQEAEPPLTAVLVEEEEEE-GGRAGAEGGAAGPDDGGVAAAS 71
>gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens]
Length = 1537
Score = 28.5 bits (62), Expect = 1.9
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 26 RGQRGEGLHTKTALSSRRGKAAAEENPV-------GLAVLDEEKEGVVGAEAGDESGTP 77
+G GL + + S+RGK ++ NP GLA L + EG G EAG E G P
Sbjct: 1340 KGPEAAGLSSPLSFPSQRGKEGSDANPFLSKRQLDGLAGL--KGEGSRGKEAG-EGGLP 1395
>gi|6912372 forkhead box D3 [Homo sapiens]
Length = 478
Score = 28.1 bits (61), Expect = 2.5
Identities = 17/43 (39%), Positives = 17/43 (39%)
Query: 44 GKAAAEENPVGLAVLDEEKEGVVGAEAGDESGTPHHHDGSCGG 86
G A VG D K GV G E G G P GS GG
Sbjct: 87 GAGAGPGGDVGAPEADGCKGGVGGEEGGASGGGPGAGSGSAGG 129
>gi|7706515 photoreceptor-specific nuclear receptor isoform a [Homo
sapiens]
Length = 367
Score = 27.3 bits (59), Expect = 4.3
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 35 TKTALSSRRGKAAAEENPVGLAVLDEEKEGVVGA----EAGDESGTPHHHDGSCGGCSLR 90
T A + G A+ +E+P G L E+ GV + GD S H+ +C GCS
Sbjct: 12 TVAAAAPAAGAASRKESP-GRWGLGEDPTGVSPSLQCRVCGDSSSGKHYGIYACNGCS-G 69
Query: 91 AFLIDLHKRLVH----DLGQRQVCLGHSREVCLAQLEGISHAQVAQDTL 135
F + +RL++ G V H + +L+ A + QD +
Sbjct: 70 FFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAV 118
>gi|7657395 photoreceptor-specific nuclear receptor isoform b [Homo
sapiens]
Length = 410
Score = 27.3 bits (59), Expect = 4.3
Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 35 TKTALSSRRGKAAAEENPVGLAVLDEEKEGVVGA----EAGDESGTPHHHDGSCGGCSLR 90
T A + G A+ +E+P G L E+ GV + GD S H+ +C GCS
Sbjct: 12 TVAAAAPAAGAASRKESP-GRWGLGEDPTGVSPSLQCRVCGDSSSGKHYGIYACNGCS-G 69
Query: 91 AFLIDLHKRLVH----DLGQRQVCLGHSREVCLAQLEGISHAQVAQDTL 135
F + +RL++ G V H + +L+ A + QD +
Sbjct: 70 FFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAV 118
>gi|60685227 SECIS binding protein 2-like [Homo sapiens]
Length = 1056
Score = 27.3 bits (59), Expect = 4.3
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 19 AGTLWSVRGQRGEGLHTKTALSSRRGKAAAE-ENPVG-LAVLDEEKEGVVGAEAGDESGT 76
A LW +G+R H SS +G + A+ ++ G + + GA +SGT
Sbjct: 237 ATMLWKSKGRRRRASHPTAESSSEQGASEADIDSDSGYCSPKHSNNQPAAGALRNPDSGT 296
Query: 77 PHHHDGS-CGG 86
+H + S C G
Sbjct: 297 MNHVESSMCAG 307
>gi|222446611 R-spondin family, member 2 [Homo sapiens]
Length = 243
Score = 26.9 bits (58), Expect = 5.6
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 49 EENPVGLAVLDEEKEGVVGAEAG--DESGTPHHHDGSCG 85
+E P G A L+E E V G E G E GT ++ +CG
Sbjct: 126 DECPDGFAPLEETMECVEGCEVGHWSEWGTCSRNNRTCG 164
>gi|42794265 MAS-related GPR, member D [Homo sapiens]
Length = 321
Score = 26.9 bits (58), Expect = 5.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 3 PLFLNCHHCTDKATWVAGTLWSV 25
P++ CH + WV G LW++
Sbjct: 130 PIWFKCHRPRHLSAWVCGLLWTL 152
>gi|239753832 PREDICTED: hypothetical protein XP_002345793 [Homo
sapiens]
Length = 203
Score = 26.6 bits (57), Expect = 7.3
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 26 RGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDEEKEGVVGAEAGDESGTPHHHDGSCG 85
+G RG G RRG EEN +G+A D +V G T HH + G
Sbjct: 50 QGARGAG--------KRRGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLG 101
>gi|239748395 PREDICTED: hypothetical protein XP_002346654 [Homo
sapiens]
Length = 203
Score = 26.6 bits (57), Expect = 7.3
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 26 RGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDEEKEGVVGAEAGDESGTPHHHDGSCG 85
+G RG G RRG EEN +G+A D +V G T HH + G
Sbjct: 50 QGARGAG--------KRRGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLG 101
>gi|239742323 PREDICTED: hypothetical protein XP_002342491 [Homo
sapiens]
Length = 203
Score = 26.6 bits (57), Expect = 7.3
Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 8/60 (13%)
Query: 26 RGQRGEGLHTKTALSSRRGKAAAEENPVGLAVLDEEKEGVVGAEAGDESGTPHHHDGSCG 85
+G RG G RRG EEN +G+A D +V G T HH + G
Sbjct: 50 QGARGAG--------KRRGCELTEENVLGVAAPDLVVAVLVDEGGGARGVTRHHVEAGLG 101
>gi|150378528 G protein-coupled receptor associated sorting protein
1 [Homo sapiens]
Length = 1395
Score = 26.2 bits (56), Expect = 9.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 58 LDEEKEGVVGAEAGDESGTPHHHDGSCGGCSLRA 91
L EKEG+VG+ G T GSC S +A
Sbjct: 803 LAAEKEGIVGSWFGAREETIRREAGSCSKSSPKA 836
>gi|150378489 G protein-coupled receptor associated sorting protein
1 [Homo sapiens]
Length = 1395
Score = 26.2 bits (56), Expect = 9.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 58 LDEEKEGVVGAEAGDESGTPHHHDGSCGGCSLRA 91
L EKEG+VG+ G T GSC S +A
Sbjct: 803 LAAEKEGIVGSWFGAREETIRREAGSCSKSSPKA 836
>gi|103472136 G protein-coupled receptor associated sorting protein
1 [Homo sapiens]
Length = 1395
Score = 26.2 bits (56), Expect = 9.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Query: 58 LDEEKEGVVGAEAGDESGTPHHHDGSCGGCSLRA 91
L EKEG+VG+ G T GSC S +A
Sbjct: 803 LAAEKEGIVGSWFGAREETIRREAGSCSKSSPKA 836
>gi|10863935 reticulon 1 isoform A [Homo sapiens]
Length = 776
Score = 26.2 bits (56), Expect = 9.5
Identities = 16/55 (29%), Positives = 21/55 (38%)
Query: 30 GEGLHTKTALSSRRGKAAAEENPVGLAVLDEEKEGVVGAEAGDESGTPHHHDGSC 84
G G + A S G A ++PV + GV A S T +GSC
Sbjct: 50 GLGARAREAASREAGSGPARQSPVAMETASTGVAGVSSAMDHTFSTTSKDGEGSC 104
>gi|6912676 SKI-interacting protein [Homo sapiens]
Length = 536
Score = 26.2 bits (56), Expect = 9.5
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 42 RRGKAAAEENPVGLAVLDEEKEGVVGAEAGDESGTP--HHHDG 82
R G EE+P GL EE + G++ +S P H H+G
Sbjct: 488 REGPVQFEEDPFGLDKFLEEAKQHGGSKRPSDSSRPKEHEHEG 530
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,904,552
Number of Sequences: 37866
Number of extensions: 263135
Number of successful extensions: 747
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 731
Number of HSP's gapped (non-prelim): 29
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
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Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.