Guide to the Human Genome
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Search of human proteins with 239748651

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748651 PREDICTED: similar to rCG33261 [Homo sapiens]
         (213 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754098 PREDICTED: similar to rCG33261 [Homo sapiens]            427   e-120
gi|239748651 PREDICTED: similar to rCG33261 [Homo sapiens]            427   e-120
gi|239742676 PREDICTED: similar to rCG33261 [Homo sapiens]            427   e-120
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         39   0.003
gi|110349719 titin isoform N2-A [Homo sapiens]                         35   0.062
gi|31742498 unc-84 homolog B [Homo sapiens]                            34   0.081
gi|46559761 PDZ domain containing 4 [Homo sapiens]                     33   0.14 
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]     33   0.18 
gi|205360947 microtubule associated monoxygenase, calponin and L...    33   0.24 
gi|226530313 microtubule associated monoxygenase, calponin and L...    33   0.24 
gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [H...    32   0.31 
gi|60592764 chromosome 22 open reading frame 42 [Homo sapiens]         32   0.40 
gi|197333868 T-box 2 [Homo sapiens]                                    32   0.52 
gi|217330634 serine/threonine kinase 36 [Homo sapiens]                 32   0.52 
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu...    31   0.89 
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre...    31   0.89 
gi|239753371 PREDICTED: hypothetical protein [Homo sapiens]            31   0.89 
gi|239747938 PREDICTED: hypothetical protein XP_002346476 [Homo ...    31   0.89 
gi|239741833 PREDICTED: hypothetical protein XP_002342339 [Homo ...    31   0.89 
gi|45597177 TBC1 domain family, member 9B (with GRAM domain) iso...    31   0.89 
gi|45597175 TBC1 domain family, member 9B (with GRAM domain) iso...    31   0.89 
gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6...    30   1.2  
gi|165932385 hypothetical protein LOC388341 isoform 1 [Homo sapi...    30   1.2  
gi|41393608 reticulon 3 isoform b [Homo sapiens]                       30   1.5  
gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]                    30   1.5  
gi|54607124 RNA binding motif protein 15B [Homo sapiens]               30   1.5  
gi|23238226 CDC42 effector protein 1 [Homo sapiens]                    30   1.5  
gi|55956788 nucleolin [Homo sapiens]                                   30   2.0  
gi|55741677 SET domain containing 1A [Homo sapiens]                    30   2.0  
gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]       30   2.0  

>gi|239754098 PREDICTED: similar to rCG33261 [Homo sapiens]
          Length = 213

 Score =  427 bits (1099), Expect = e-120
 Identities = 213/213 (100%), Positives = 213/213 (100%)

Query: 1   MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG 60
           MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG
Sbjct: 1   MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG 60

Query: 61  SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL 120
           SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL
Sbjct: 61  SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL 120

Query: 121 HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT 180
           HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT
Sbjct: 121 HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT 180

Query: 181 SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT 213
           SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT
Sbjct: 181 SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT 213


>gi|239748651 PREDICTED: similar to rCG33261 [Homo sapiens]
          Length = 213

 Score =  427 bits (1099), Expect = e-120
 Identities = 213/213 (100%), Positives = 213/213 (100%)

Query: 1   MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG 60
           MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG
Sbjct: 1   MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG 60

Query: 61  SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL 120
           SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL
Sbjct: 61  SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL 120

Query: 121 HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT 180
           HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT
Sbjct: 121 HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT 180

Query: 181 SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT 213
           SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT
Sbjct: 181 SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT 213


>gi|239742676 PREDICTED: similar to rCG33261 [Homo sapiens]
          Length = 213

 Score =  427 bits (1099), Expect = e-120
 Identities = 213/213 (100%), Positives = 213/213 (100%)

Query: 1   MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG 60
           MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG
Sbjct: 1   MWPLRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGG 60

Query: 61  SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL 120
           SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL
Sbjct: 61  SGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSL 120

Query: 121 HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT 180
           HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT
Sbjct: 121 HHGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNSTLLDT 180

Query: 181 SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT 213
           SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT
Sbjct: 181 SKAVAIEKAPQFSNVSAIFSTSSEDYQKCHRKT 213


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 33/129 (25%), Positives = 54/129 (41%), Gaps = 13/129 (10%)

Query: 27   SPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSG-----PFSPRLGVTGEKSLQEN 81
            S + + +  GS+ +G+        E+ +++  GG G+G       S R       S   +
Sbjct: 2569 SSSSSSSSSGSETEGE--------EEGDKNGDGGCGTGGRNCSAASSRAASPASSSSSSS 2620

Query: 82   RSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLSYSVTDSYAEYK 141
             SS  +     +S   S +      SSSS+S   S  S     +SS  S S TD  +   
Sbjct: 2621 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCS 2680

Query: 142  SFEESFPSP 150
            S +E+ P+P
Sbjct: 2681 SDDEAAPAP 2689



 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 4/88 (4%)

Query: 9    RKKREGQRLN----LTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSG 64
            RKK++G+       L P      P++A AP  S         +K   K  +    G G  
Sbjct: 2048 RKKKKGKEAGPGAGLPPPRAPALPSEARAPHASSLTAAKRSKAKAKGKEVKKENRGKGGA 2107

Query: 65   PFSPRLGVTGEKSLQENRSSEDTQDEKI 92
                   +  E+  + N+ S  ++DE +
Sbjct: 2108 VSKLMESMAAEEDFEPNQDSSFSEDEHL 2135


>gi|110349719 titin isoform N2-A [Homo sapiens]
          Length = 33423

 Score = 34.7 bits (78), Expect = 0.062
 Identities = 29/140 (20%), Positives = 55/140 (39%), Gaps = 17/140 (12%)

Query: 65   PFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSE--------LVS 116
            P  P+  V  EK L+     E+    K+   R+ V  + +V   +   E        ++ 
Sbjct: 9665 PEEPKRAVPEEKVLKLKPKREEEPPAKVTEFRKRVVKEEKVSIEAPKREPQPIKEVTIME 9724

Query: 117  GLSLHHGMASSLLSYSVTDSYAEY-----KSFEESFPSPELFRKSDYLDWECPNLEEHMQ 171
                 + +    +S    + Y EY     K FEE  P+ E  +  +Y + E    EEH +
Sbjct: 9725 EKERAYTLEEEAVSVQREEEYEEYEEYDYKEFEEYEPTEEYDQYEEYEEREYERYEEHEE 9784

Query: 172  WKNSTLLDTSKAVAIEKAPQ 191
            +    + +  K + ++  P+
Sbjct: 9785 Y----ITEPEKPIPVKPVPE 9800


>gi|31742498 unc-84 homolog B [Homo sapiens]
          Length = 717

 Score = 34.3 bits (77), Expect = 0.081
 Identities = 35/130 (26%), Positives = 51/130 (39%), Gaps = 21/130 (16%)

Query: 3   PLRVYTRKKREGQRLNLTPTPDLGSPAKAEA-------------PPGSKRKGKVHGLSKI 49
           PLR   RK    +RL+  P P LG  + A               PP S  + ++HG +  
Sbjct: 39  PLRTLKRKSSNMKRLS--PAPQLGPSSDAHTSYYSESLVHESWFPPRSSLE-ELHGDANW 95

Query: 50  AEKAERSRQGGSGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSS 109
            E     R+ G+G    S   G+ G K+ ++   S         S  +       VD  S
Sbjct: 96  GEDLRVRRRRGTGGSESSRASGLVGRKATEDFLGSSSGY-----SSEDDYVGYSDVDQQS 150

Query: 110 SNSELVSGLS 119
           S+S L S +S
Sbjct: 151 SSSRLRSAVS 160


>gi|46559761 PDZ domain containing 4 [Homo sapiens]
          Length = 769

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 28/75 (37%), Positives = 35/75 (46%), Gaps = 8/75 (10%)

Query: 3   PLRVYTRKKREGQRLNLTPT-PDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGS 61
           PLR   R       LN TP  P + +PAKA  PPGS    K   LS+  E     RQ   
Sbjct: 491 PLR---RAMAGNSNLNRTPPGPAVATPAKAAPPPGS--PAKFRSLSRDPEAGR--RQHAE 543

Query: 62  GSGPFSPRLGVTGEK 76
             G  +P+ G+T E+
Sbjct: 544 ERGRRNPKTGLTLER 558


>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
          Length = 1020

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 23/104 (22%), Positives = 43/104 (41%), Gaps = 4/104 (3%)

Query: 10  KKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPR 69
           KK E +     PTP+  +PAK E    +K K K    +++A+K     +    S P   +
Sbjct: 893 KKEEAEDKKKVPTPEKEAPAKVEVKEDAKPKEK----TEVAKKEPDDAKAKEPSKPAEKK 948

Query: 70  LGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSE 113
                +K  +E ++ +  +  K  +  +     L  + S   +E
Sbjct: 949 EAAPEKKDTKEEKAKKPEEKPKTEAKAKEDDKTLSKEPSKPKAE 992


>gi|205360947 microtubule associated monoxygenase, calponin and LIM
           domain containing 1 isoform 1 [Homo sapiens]
          Length = 1067

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 12/109 (11%)

Query: 4   LRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGS 63
           +R+ + +++    LNLTP P++  P K   PP S         S +A  A  S   G G 
Sbjct: 806 IRLSSPERQRLSSLNLTPDPEMEPPPK---PPRS--------CSALARHALESSFVGWGL 854

Query: 64  GPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNS 112
              SP+  V  EK  +E+  S + ++E +  L   V   LQ  + +S +
Sbjct: 855 PVQSPQALVAMEKEEKESPFSSEEEEEDV-PLDSDVEQALQTFAKTSGT 902


>gi|226530313 microtubule associated monoxygenase, calponin and LIM
           domain containing 1 isoform 2 [Homo sapiens]
          Length = 981

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 31/109 (28%), Positives = 50/109 (45%), Gaps = 12/109 (11%)

Query: 4   LRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGS 63
           +R+ + +++    LNLTP P++  P K   PP S         S +A  A  S   G G 
Sbjct: 720 IRLSSPERQRLSSLNLTPDPEMEPPPK---PPRS--------CSALARHALESSFVGWGL 768

Query: 64  GPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNS 112
              SP+  V  EK  +E+  S + ++E +  L   V   LQ  + +S +
Sbjct: 769 PVQSPQALVAMEKEEKESPFSSEEEEEDV-PLDSDVEQALQTFAKTSGT 816


>gi|118601081 heterogeneous nuclear ribonucleoprotein U-like 2 [Homo
           sapiens]
          Length = 747

 Score = 32.3 bits (72), Expect = 0.31
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 6/82 (7%)

Query: 13  EGQRLNLTPTPDLGS-PAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLG 71
           E   +     PD    PA+A A  G    G+  GL K  E     R     SG  +P   
Sbjct: 115 EAAAMEAAAEPDASEKPAEATAGSGGVNGGEEQGLGKREEDEPEER-----SGDETPGSE 169

Query: 72  VTGEKSLQENRSSEDTQDEKIA 93
           V G+K+ +E    +D++  K A
Sbjct: 170 VPGDKAAEEQGDDQDSEKSKPA 191


>gi|60592764 chromosome 22 open reading frame 42 [Homo sapiens]
          Length = 251

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 47/183 (25%), Positives = 74/183 (40%), Gaps = 29/183 (15%)

Query: 4   LRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKV----HGLSKI-----AEKAE 54
           L +  +K +  Q L+L  TP +   +K      SKR  K+    HG+  +      E  +
Sbjct: 51  LDLKAKKAQLMQYLSLPKTPKMLKMSKG-LDARSKRWLKIIWRRHGIWPLENIGPTEDVQ 109

Query: 55  RSRQGGSGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSEL 114
            S  GG      S    +   ++  ++R +ED Q      + E++T D+++  +  +  L
Sbjct: 110 ASAHGGVEENMTSD---IEIPEAKHDHRPTEDVQVSAHGGVEENITSDIEISEAKHDHHL 166

Query: 115 VSGLS------LHHGMASSL---LSYSVTDSYAEYKSFE-----ESFPSPELF--RKSDY 158
           V  LS      L   M S L   LS S+ D      S       E   +PE+   R  DY
Sbjct: 167 VEDLSESLSVCLEDFMTSDLSESLSVSLEDFMTSGLSESLSVSLEDLMTPEMAKERYEDY 226

Query: 159 LDW 161
           L W
Sbjct: 227 LCW 229


>gi|197333868 T-box 2 [Homo sapiens]
          Length = 712

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 27/105 (25%), Positives = 44/105 (41%), Gaps = 20/105 (19%)

Query: 10  KKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPR 69
           ++R G  L  +P PD  SP +   P  ++ +       +  E+ +   + G G GPF   
Sbjct: 369 EERAGAPLGRSPAPDSASPTRLTEPERARER-------RSPERGKEPAESG-GDGPF--- 417

Query: 70  LGVTGEKSLQENRSSEDTQDEKIASLRESVTDDL-----QVDSSS 109
               G +SL++ R+    +DE      E     L     Q DS+S
Sbjct: 418 ----GLRSLEKERAEARRKDEGRKEAAEGKEQGLAPLVVQTDSAS 458


>gi|217330634 serine/threonine kinase 36 [Homo sapiens]
          Length = 1315

 Score = 31.6 bits (70), Expect = 0.52
 Identities = 45/186 (24%), Positives = 80/186 (43%), Gaps = 33/186 (17%)

Query: 23  PDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVTGEKSLQ--- 79
           PDLG+P  +  PP      ++  L    E+A R    G+ S   +       E+++Q   
Sbjct: 267 PDLGTPFTSRLPP------ELQVLKD--EQAHRLAPKGNQSRILTQAYKRMAEEAMQKKH 318

Query: 80  ENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLSYSVTDSYAE 139
           +N      Q++K + +        ++ ++   S L++G+     +AS L S        E
Sbjct: 319 QNTGPALEQEDKTSKVAPGTAPLPRLGATPQESSLLAGI-----LASELKSSWAKSGTGE 373

Query: 140 YKS----------FEESFPS--PELF--RKSDYLDWECPNLEEHMQWKNSTLLDTSKAVA 185
             S           E +FP   PE+   R +D +D E    +   +W++  LL+T++ V 
Sbjct: 374 VPSAPRENRTTPDCERAFPEERPEVLGQRSTDVVDLENEEPDSDNEWQH--LLETTEPVP 431

Query: 186 IE-KAP 190
           I+ KAP
Sbjct: 432 IQLKAP 437


>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
           precursor [Homo sapiens]
          Length = 513

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 75  EKSLQENRSSEDTQDEKIASLR----ESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLS 130
           E +L    +S ++Q+E ++  R    +  T  ++    S +SE  S  +L H  + S   
Sbjct: 343 EANLSSQENSSESQEEVVSESRGDNPDPTTSYVEDQEDSDSSEEDSSHTLSHSKSESREE 402

Query: 131 YSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNS-TLLDTSKAVAIEKA 189
            + ++S       EES  SPE    S     +  +     Q + S +  D S +    ++
Sbjct: 403 QADSESSESLNFSEESPESPEDENSSSQEGLQSHSSSAESQSEESHSEEDDSDSQDSSRS 462

Query: 190 PQFSNVSAIFSTSSEDYQ 207
            + SN +   S+S ED Q
Sbjct: 463 KEDSNSTESKSSSEEDGQ 480


>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
           precursor [Homo sapiens]
          Length = 497

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 33/138 (23%), Positives = 59/138 (42%), Gaps = 5/138 (3%)

Query: 75  EKSLQENRSSEDTQDEKIASLR----ESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLS 130
           E +L    +S ++Q+E ++  R    +  T  ++    S +SE  S  +L H  + S   
Sbjct: 327 EANLSSQENSSESQEEVVSESRGDNPDPTTSYVEDQEDSDSSEEDSSHTLSHSKSESREE 386

Query: 131 YSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQWKNS-TLLDTSKAVAIEKA 189
            + ++S       EES  SPE    S     +  +     Q + S +  D S +    ++
Sbjct: 387 QADSESSESLNFSEESPESPEDENSSSQEGLQSHSSSAESQSEESHSEEDDSDSQDSSRS 446

Query: 190 PQFSNVSAIFSTSSEDYQ 207
            + SN +   S+S ED Q
Sbjct: 447 KEDSNSTESKSSSEEDGQ 464


>gi|239753371 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 119

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 29  AKAEAPPGSKRKG-KVHGLSKIAEKAERSRQGGSGSGPFSP 68
           A + APPGS   G ++H    +   A R  + G  SGPF P
Sbjct: 62  AASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLP 102


>gi|239747938 PREDICTED: hypothetical protein XP_002346476 [Homo
           sapiens]
          Length = 119

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 29  AKAEAPPGSKRKG-KVHGLSKIAEKAERSRQGGSGSGPFSP 68
           A + APPGS   G ++H    +   A R  + G  SGPF P
Sbjct: 62  AASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLP 102


>gi|239741833 PREDICTED: hypothetical protein XP_002342339 [Homo
           sapiens]
          Length = 119

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 29  AKAEAPPGSKRKG-KVHGLSKIAEKAERSRQGGSGSGPFSP 68
           A + APPGS   G ++H    +   A R  + G  SGPF P
Sbjct: 62  AASAAPPGSPALGNRLHAGGPLPRSASRPTRAGQESGPFLP 102


>gi|45597177 TBC1 domain family, member 9B (with GRAM domain) isoform
            b [Homo sapiens]
          Length = 1233

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 18/104 (17%)

Query: 21   PTPDLGSPAKAE------APPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVTG 74
            P P+L   A  E        P +K  G  H L K  ++++   +GGSG G  SP      
Sbjct: 1070 PAPELHQDAARELQPPAAGDPQAKAGGDTH-LGKAPQESQVVVEGGSGEGQGSP------ 1122

Query: 75   EKSLQENRSSEDTQDE-KIASLRESVTDDLQVDSSSSNSELVSG 117
                 +  S ++T+D+  ++S     T  LQ +  + ++ LV G
Sbjct: 1123 ----SQLLSDDETKDDMSMSSYSVVSTGSLQCEDLADDTVLVGG 1162


>gi|45597175 TBC1 domain family, member 9B (with GRAM domain) isoform
            a [Homo sapiens]
          Length = 1250

 Score = 30.8 bits (68), Expect = 0.89
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 18/104 (17%)

Query: 21   PTPDLGSPAKAE------APPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVTG 74
            P P+L   A  E        P +K  G  H L K  ++++   +GGSG G  SP      
Sbjct: 1087 PAPELHQDAARELQPPAAGDPQAKAGGDTH-LGKAPQESQVVVEGGSGEGQGSP------ 1139

Query: 75   EKSLQENRSSEDTQDE-KIASLRESVTDDLQVDSSSSNSELVSG 117
                 +  S ++T+D+  ++S     T  LQ +  + ++ LV G
Sbjct: 1140 ----SQLLSDDETKDDMSMSSYSVVSTGSLQCEDLADDTVLVGG 1179


>gi|117606360 ADP-ribosylation factor guanine nucleotide factor 6
           isoform a [Homo sapiens]
          Length = 1047

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 21/107 (19%)

Query: 56  SRQGGSGSGPFSP-RLGVTGEKS--LQENRS------SEDTQDEKIASLRESV------- 99
           S + G+ SG FSP RL  +GE    LQEN+         +   E+I+   E V       
Sbjct: 369 SERPGTSSGTFSPVRLDESGEDEVFLQENKQHLEKTPKPERDRERISEQEEHVKGEDEDI 428

Query: 100 -----TDDLQVDSSSSNSELVSGLSLHHGMASSLLSYSVTDSYAEYK 141
                T+D     SS    ++   SL++   S    YS  DSY  ++
Sbjct: 429 LGPGYTEDSTDVYSSQFETILDNTSLYYSAESLETLYSEPDSYFSFE 475


>gi|165932385 hypothetical protein LOC388341 isoform 1 [Homo
           sapiens]
          Length = 344

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 40/174 (22%), Positives = 68/174 (39%), Gaps = 25/174 (14%)

Query: 25  LGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVTGEKSLQENRSS 84
           L   A   A PG +R+      S +    +++ + G+G  P+  R+G+  E      R  
Sbjct: 10  LAERASPGAAPGPRRERPDFWASLLLRAGDKAGRAGAGMPPYHRRVGMVQELL----RMV 65

Query: 85  EDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLSYSVTDSYAEYKSFE 144
              + E+  +L + +  DL ++S+S +  L    S  +      +++ +  S A Y    
Sbjct: 66  RQGRREEAGTLLQHLRQDLGMESTSLDDVLYRYASFRN--LVDPITHDLIISLARY---- 119

Query: 145 ESFPSPE---------LFRKSDYLDWECPNLEEHMQWKNSTLLDTSKAVAIEKA 189
              P PE         L R+  Y      +L  H QW+    L   K  A  KA
Sbjct: 120 IHCPKPEGDALGAMEKLCRQLTY------HLSPHSQWRRHRGLVKRKPQACLKA 167


>gi|41393608 reticulon 3 isoform b [Homo sapiens]
          Length = 1013

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 11/88 (12%)

Query: 44  HGLSKIAEKAERSRQGGSGSGPFSPRLGVTGEKSLQENRSSEDTQDEKIASL-RESVTDD 102
           H +S  +  AE S  GG GS    P LG          +S   +  E ++SL  +  + +
Sbjct: 11  HSISSSSFGAEPSAPGGGGSPGACPALG---------TKSCSSSCAEGLSSLCSDEPSSE 61

Query: 103 LQVDSSSSNSEL-VSGLSLHHGMASSLL 129
           +   S  S+SE+  +GL++ HG  S +L
Sbjct: 62  IMTSSFLSSSEIHNTGLTILHGEKSHVL 89


>gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]
          Length = 696

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 38/136 (27%), Positives = 54/136 (39%), Gaps = 26/136 (19%)

Query: 20  TPTPDLGSPAKAEAPPGSKRKGKVHGLSK---IAEKAERSRQGGSGSGPFSPRLGVTGEK 76
           TP P+ GSP+ A  PP  KR     G+SK   ++  A      G GS   +P  G     
Sbjct: 477 TPRPEGGSPSPAGTPPQPKRPRP--GVSKDGLLSPGAWNGEPSGEGSRSVTPSEGA---- 530

Query: 77  SLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLSYSVTDS 136
                RS      E++A       + LQ   + S    V+    +H       SY+V  +
Sbjct: 531 ---GRRSPARPATERMA------IEALQAPPAPSREPEVALYQGYH-------SYAVRTT 574

Query: 137 YAEYKSFEESFPSPEL 152
             E   FE+  P PE+
Sbjct: 575 PPEPPPFEDQ-PEPEV 589


>gi|54607124 RNA binding motif protein 15B [Homo sapiens]
          Length = 890

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 44/170 (25%), Positives = 62/170 (36%), Gaps = 18/170 (10%)

Query: 4   LRVYTRKKREGQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSG- 62
           L  Y+R  R           D G P   E     +      G +  +   ERSR  GSG 
Sbjct: 563 LEGYSRSVRSRSGERWGADGDRGLPKPWEERRKRRSLSSDRGRTTHSPYEERSRTKGSGQ 622

Query: 63  -SGPFSPRLGVTGEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSLH 121
            S   S R   T E+S +EN SSE T++    SL           +S   +E       H
Sbjct: 623 QSERGSDR---TPERSRKENHSSEGTKESSSNSL----------SNSRHGAEERGHHHHH 669

Query: 122 HGMASSLLSYSVTDSYAEYKSFEESFPSPELFRKSDYLDWECPNLEEHMQ 171
           H  A S       DS   +++ E     P+   +  +   +  NL E+ Q
Sbjct: 670 HEAADSSHGKKARDSERNHRTTE---AEPKPLEEPKHETKKLKNLSEYAQ 716


>gi|23238226 CDC42 effector protein 1 [Homo sapiens]
          Length = 391

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 21  PTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLG 71
           P  +  +PA +  P G    G   GL  +AE  + S  GG   GP  P LG
Sbjct: 269 PAANPPAPAASSTPHGHCPNGVTAGLGPVAE-VKSSPVGGGPRGPAGPALG 318


>gi|55956788 nucleolin [Homo sapiens]
          Length = 710

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 14/100 (14%)

Query: 14  GQRLNLTPTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVT 73
           G++   TP     +PAKA   PG  +KG   G + +A   ++        G   P  G  
Sbjct: 86  GKKAAATPAKKTVTPAKAVTTPG--KKGATPGKALVATPGKK--------GAAIPAKGAK 135

Query: 74  GEKSLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSE 113
             K    N   ED+ +E+     E   DD   D      E
Sbjct: 136 NGK----NAKKEDSDEEEDDDSEEDEEDDEDEDEDEDEIE 171


>gi|55741677 SET domain containing 1A [Homo sapiens]
          Length = 1707

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 29/129 (22%), Positives = 49/129 (37%), Gaps = 2/129 (1%)

Query: 21   PTPDLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVTGEKSLQE 80
            P P   +    + P   K  G+         K +  R    G    S  L   GE++ QE
Sbjct: 912  PRPSTPAEEDEDDPEQEKEAGEPGRPGTKPPKRDEERGKTQGKHRKSFALDSEGEEASQE 971

Query: 81   NRSSEDTQDEKIASLRESVTDDLQVDSSSSNSELVSGLSLHHGMASSLLSYSVTDSYAEY 140
            + S +D +D++     E    +  VD++   +E+  G       +S    Y+ +D   + 
Sbjct: 972  SSSEKDEEDDE--EDEEDEDREEAVDTTKKETEVSDGEDEESDSSSKCSLYADSDGENDS 1029

Query: 141  KSFEESFPS 149
             S  ES  S
Sbjct: 1030 TSDSESSSS 1038


>gi|187937179 apoptosis-associated tyrosine kinase [Homo sapiens]
          Length = 1374

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 13/97 (13%)

Query: 19   LTPTP--DLGSPAKAEAPPGSKRKGKVHGLSKIAEKAERSRQGGSGSGPFSPRLGVTGEK 76
            LTP P    G+ ++ + PPG            ++  A + R GG G+     RL + G  
Sbjct: 1103 LTPVPLRSEGNSSEFQGPPGL-----------LSGPAPQKRMGGPGTPRAPLRLALPGLP 1151

Query: 77   SLQENRSSEDTQDEKIASLRESVTDDLQVDSSSSNSE 113
            +  E R  E+ +D + +   +       V   S +SE
Sbjct: 1152 AALEGRPEEEEEDSEDSDESDEELRCYSVQEPSEDSE 1188


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.307    0.124    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,653,112
Number of Sequences: 37866
Number of extensions: 406301
Number of successful extensions: 1686
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 66
Number of HSP's that attempted gapping in prelim test: 1636
Number of HSP's gapped (non-prelim): 115
length of query: 213
length of database: 18,247,518
effective HSP length: 98
effective length of query: 115
effective length of database: 14,536,650
effective search space: 1671714750
effective search space used: 1671714750
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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