Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC728637 Sequence: fasta or formatted (213aa) NCBI GI: 239748651
Description:

PREDICTED: similar to rCG33261

Not currently referenced in the text

Other entries for this name:
alt mRNA {213aa} PREDICTED: similar to rCG33261
alt mRNA {213aa} PREDICTED: similar to rCG33261
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         12           1
 C cysteine            0.9          2           1
 D aspartate           5.2         11           2
 E glutamate           8.9         19           2
 F phenylalanine       2.8          6           1
 G glycine             6.1         13           2
 H histidine           2.3          5           2
 I isoleucine          1.9          4           1
 K lysine              8.0         17           2
 L leucine             8.9         19           2
 M methionine          1.4          3           1
 N asparagine          2.8          6           1
 P proline             5.6         12           2
 Q glutamine           3.8          8           1
 R arginine            5.6         12           1
 S serine             16.4         35           4
 T threonine           5.2         11           1
 V valine              4.2          9           1
 W tryptophan          1.4          3           1
 Y tyrosine            2.8          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to rCG33261 
LOC728637             1.000   PREDICTED: similar to rCG33261 
LOC728637             1.000   PREDICTED: similar to rCG33261 
TNRC18                0.035   trinucleotide repeat containing 18 
TTN                   0.025   titin isoform N2-A 
UNC84B                0.022   unc-84 homolog B 
PDZD4                 0.020   PDZ domain containing 4 
NEFH                  0.020   neurofilament, heavy polypeptide 200kDa 
MICAL1                0.020   microtubule associated monoxygenase, calponin and L...
MICAL1                0.020   microtubule associated monoxygenase, calponin and L...
HNRNPUL2              0.017   heterogeneous nuclear ribonucleoprotein U-like 2 [H...
C22orf42              0.017   chromosome 22 open reading frame 42 
TBX2                  0.017   T-box 2 
STK36                 0.017   serine/threonine kinase 36 
DMP1                  0.015   dentin matrix acidic phosphoprotein 1 isoform 1 precu...
DMP1                  0.015   dentin matrix acidic phosphoprotein 1 isoform 2 pre...
LOC100293861          0.015   PREDICTED: hypothetical protein 
LOC100291362          0.015   PREDICTED: hypothetical protein XP_002346476 
LOC100286920          0.015   PREDICTED: hypothetical protein XP_002342339 
TBC1D9B               0.015   TBC1 domain family, member 9B (with GRAM domain) iso...
TBC1D9B               0.015   TBC1 domain family, member 9B (with GRAM domain) iso...
PSD3                  0.012   ADP-ribosylation factor guanine nucleotide factor 6...
C17orf76              0.012   hypothetical protein LOC388341 isoform 1 
RTN3                  0.012   reticulon 3 isoform b 
JPH2                  0.012   junctophilin 2 isoform 1 
RBM15B                0.012   RNA binding motif protein 15B 
CDC42EP1              0.012   CDC42 effector protein 1 
NCL                   0.012   nucleolin 
SETD1A                0.012   SET domain containing 1A 
AATK                  0.012   apoptosis-associated tyrosine kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press