Guide to the Human Genome
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Name: LOC100291362 Sequence: fasta or formatted (119aa) NCBI GI: 239747938
Description:

PREDICTED: hypothetical protein XP_002346476

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            18.5         22           5
 C cysteine            0.8          1           1
 D aspartate           1.7          2           1
 E glutamate           3.4          4           1
 F phenylalanine       1.7          2           1
 G glycine             8.4         10           2
 H histidine           5.0          6           2
 I isoleucine          3.4          4           2
 K lysine              0.8          1           1
 L leucine            10.1         12           2
 M methionine          0.8          1           1
 N asparagine          1.7          2           1
 P proline            12.6         15           3
 Q glutamine           3.4          4           1
 R arginine           12.6         15           3
 S serine              5.9          7           1
 T threonine           2.5          3           1
 V valine              4.2          5           1
 W tryptophan          1.7          2           1
 Y tyrosine            0.8          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346476 
LOC100293861          1.000   PREDICTED: hypothetical protein 
LOC100286920          1.000   PREDICTED: hypothetical protein XP_002342339 
NFS1                  0.059   NFS1 nitrogen fixation 1 
SAMD1                 0.059   sterile alpha motif domain containing 1 
CENPV                 0.050   proline rich 6 
ITPKA                 0.050   1D-myo-inositol-trisphosphate 3-kinase A 
LBXCOR1               0.045   LBXCOR1 homolog 
NACA                  0.041   nascent polypeptide-associated complex alpha subuni...
HCN4                  0.041   hyperpolarization activated cyclic nucleotide-gated p...
BAT2                  0.041   HLA-B associated transcript-2 
BBC3                  0.036   BCL2 binding component 3 isoform 1 
LOC100130360          0.036   PREDICTED: hypothetical protein 
TSSK1B                0.036   testis-specific serine kinase 1 
TNRC18                0.036   trinucleotide repeat containing 18 
BTBD2                 0.036   BTB (POZ) domain containing 2 
CASKIN1               0.036   CASK interacting protein 1 
LOC388199             0.036   PREDICTED: hypothetical protein LOC388199 
LOC100129203          0.036   PREDICTED: similar to mCG50504 
INO80B                0.036   high mobility group AT-hook 1-like 4 
LOC388199             0.036   hypothetical protein LOC388199 
LOC342346             0.032   hypothetical protein LOC342346 
HOXD13                0.032   homeobox D13 
LOC100128081          0.032   PREDICTED: hypothetical protein 
LOC100128074          0.032   PREDICTED: hypothetical protein 
LOC100288993          0.032   PREDICTED: hypothetical protein XP_002342967 
BHLHE41               0.032   basic helix-loop-helix domain containing, class B, 3...
FAM48B1               0.032   hypothetical protein LOC100130302 
RERE                  0.032   atrophin-1 like protein isoform b 
RERE                  0.032   atrophin-1 like protein isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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