Search of human proteins with 239748291

Search of human proteins with 239748291

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748291 PREDICTED: similar to Putative neugrin-like
protein [Homo sapiens]
         (184 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239748291 PREDICTED: similar to Putative neugrin-like protein...   370   e-103
gi|239742191 PREDICTED: similar to Putative neugrin-like protein...   370   e-103
gi|239753687 PREDICTED: similar to Putative neugrin-like protein...   360   e-100
gi|75677385 neugrin [Homo sapiens]                                    266   6e-72
gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]       32   0.40 
gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]                     28   3.4  
gi|21071001 autocrine motility factor receptor [Homo sapiens]          28   5.8  
gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]    27   7.6  
gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo...    27   7.6  
gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo...    27   7.6  
gi|9955941 acrosomal vesicle protein 1 isoform h precursor [Homo...    27   7.6  
gi|11037061 hypothetical protein LOC56683 [Homo sapiens]               27   7.6  
gi|5453980 DnaJ (Hsp40) homolog, subfamily C, member 3 [Homo sap...    27   9.9  
gi|216548223 synaptic vesicle glycoprotein 2 [Homo sapiens]            27   9.9  
gi|19923599 calmin [Homo sapiens]                                      27   9.9  

>gi|239748291 PREDICTED: similar to Putative neugrin-like protein
           [Homo sapiens]
          Length = 184

 Score =  370 bits (951), Expect = e-103
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MEGFDVCTDVIRRRVLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG 60
           MEGFDVCTDVIRRRVLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG
Sbjct: 1   MEGFDVCTDVIRRRVLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG 60

Query: 61  HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA 120
           HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA
Sbjct: 61  HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA 120

Query: 121 VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF 180
           VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF
Sbjct: 121 VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF 180

Query: 181 LYRI 184
           LYRI
Sbjct: 181 LYRI 184


>gi|239742191 PREDICTED: similar to Putative neugrin-like protein
           [Homo sapiens]
          Length = 184

 Score =  370 bits (951), Expect = e-103
 Identities = 184/184 (100%), Positives = 184/184 (100%)

Query: 1   MEGFDVCTDVIRRRVLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG 60
           MEGFDVCTDVIRRRVLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG
Sbjct: 1   MEGFDVCTDVIRRRVLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG 60

Query: 61  HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA 120
           HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA
Sbjct: 61  HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA 120

Query: 121 VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF 180
           VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF
Sbjct: 121 VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF 180

Query: 181 LYRI 184
           LYRI
Sbjct: 181 LYRI 184


>gi|239753687 PREDICTED: similar to Putative neugrin-like protein
           [Homo sapiens]
          Length = 258

 Score =  360 bits (923), Expect = e-100
 Identities = 181/184 (98%), Positives = 181/184 (98%), Gaps = 1/184 (0%)

Query: 1   MEGFDVCTDVIRRRVLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG 60
           MEGFDVCTDVIR   LKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG
Sbjct: 76  MEGFDVCTDVIRS-FLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAG 134

Query: 61  HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA 120
           HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA
Sbjct: 135 HSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAA 194

Query: 121 VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF 180
           VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF
Sbjct: 195 VLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFDSSGNF 254

Query: 181 LYRI 184
           LYRI
Sbjct: 255 LYRI 258


>gi|75677385 neugrin [Homo sapiens]
          Length = 291

 Score =  266 bits (681), Expect = 6e-72
 Identities = 145/184 (78%), Positives = 154/184 (83%), Gaps = 2/184 (1%)

Query: 2   EGFDVCTDVIRRRVLKGKFVPTLEQKLKPDQKVLKKAGLAYSLQQLQGSGNTWKLLPAGH 61
           EGFDV TDVIRR VLK KF+PTLEQKLK DQKVLKKAGLA+SLQ L+GSGNT KLLPAGH
Sbjct: 109 EGFDVSTDVIRR-VLKSKFLPTLEQKLKQDQKVLKKAGLAHSLQHLRGSGNTSKLLPAGH 167

Query: 62  SVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAAV 121
           SVSGSLLM GHEASSK PN+ST LKVIES+T+RTNTPR  KGRNK IQDLEESFV VAA 
Sbjct: 168 SVSGSLLMPGHEASSKDPNHSTALKVIESDTHRTNTPRRRKGRNKEIQDLEESFVPVAAP 227

Query: 122 LGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAE-GRELFDSSGNF 180
           LGH R+LQKYSSD ES R TG G LPS QKLEELKA EPDN      + GRE FDS+GNF
Sbjct: 228 LGHPRELQKYSSDSESPRGTGSGALPSGQKLEELKAEEPDNFSSKVVQRGREFFDSNGNF 287

Query: 181 LYRI 184
           LYRI
Sbjct: 288 LYRI 291


>gi|58331272 zinc finger, CCHC domain containing 6 [Homo sapiens]
          Length = 1495

 Score = 31.6 bits (70), Expect = 0.40
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 135 CESIRRTGHGGLPSDQKLEELKAGEPDNQQQSS 167
           C ++RR  H  L S +   E++AG P+N++Q S
Sbjct: 148 CRTVRRLFHKDLTSLETTSEMEAGSPENKKQRS 180


>gi|217272816 RAD51-like 3 isoform 6 [Homo sapiens]
          Length = 348

 Score = 28.5 bits (62), Expect = 3.4
 Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 11/166 (6%)

Query: 14  RVLKGKFVPTLEQKLKPD-QKVLKKAGLAYSLQQLQGSGNTWKL----LPAGHSVSGSLL 68
           ++L+   + T+   +  D ++V +K GL+Y   +   SGN   L    +PAG S SG   
Sbjct: 18  QLLRSHRIKTVVDLVSADLEEVAQKCGLSYKTWRAHSSGNLGGLQLPQVPAGRSWSGVRN 77

Query: 69  MLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAAVLGH-QRK 127
            L             +L   +      +T R  K  + G+   E + +      G  Q  
Sbjct: 78  ALKKAGLGHGGTDGLSLNAFDERGTAVSTSRLDKLLDAGLYTGEVTEIVGGPGSGKTQVC 137

Query: 128 LQKYSSDCESIRRT-----GHGGLPSDQKLEELKAGEPDNQQQSSA 168
           L   ++    +++       +GGL + + L+ L+A   D ++Q+ A
Sbjct: 138 LCMAANVAHGLQQNVLYVDSNGGLTASRLLQLLQAKTQDEEEQAEA 183


>gi|21071001 autocrine motility factor receptor [Homo sapiens]
          Length = 643

 Score = 27.7 bits (60), Expect = 5.8
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 57  LPAGHSVSGSLLMLGHEASSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFV 116
           LP GH    S L    E  +  P    +L + ++N  R          ++G ++L+E+ V
Sbjct: 354 LPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIADNNRVRE--------EHQG-ENLDENLV 404

Query: 117 TVAAVLGHQR 126
            VAA  G  R
Sbjct: 405 PVAAAEGRPR 414


>gi|30089940 Golgi autoantigen, golgin subfamily a, 3 [Homo sapiens]
          Length = 1498

 Score = 27.3 bits (59), Expect = 7.6
 Identities = 14/51 (27%), Positives = 26/51 (50%)

Query: 125 QRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGRELFD 175
           QR+L+++  + E ++R        +Q+LE++K       QQ  A  +E  D
Sbjct: 671 QRRLEEFEGERERLQRMADSAASLEQQLEQVKLTLLQRDQQLEALQQEHLD 721


>gi|9955933 acrosomal vesicle protein 1 isoform e precursor [Homo
           sapiens]
          Length = 176

 Score = 27.3 bits (59), Expect = 7.6
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 122 LGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAE 169
           + HQ  +Q+   +  S  +     L  +Q L EL++GE  + +Q S E
Sbjct: 30  IDHQTSVQQLPGEQPSGEQPSGEHLSGEQPLSELESGEQPSDEQPSGE 77


>gi|9955931 acrosomal vesicle protein 1 isoform d precursor [Homo
           sapiens]
          Length = 195

 Score = 27.3 bits (59), Expect = 7.6
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 122 LGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAE 169
           + HQ  +Q+   +  S  +     L  +Q L EL++GE  + +Q S E
Sbjct: 30  IDHQTSVQQLPGEQPSGEQPSGEHLSGEQPLSELESGEQPSDEQPSGE 77


>gi|9955941 acrosomal vesicle protein 1 isoform h precursor [Homo
           sapiens]
          Length = 155

 Score = 27.3 bits (59), Expect = 7.6
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 122 LGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAE 169
           + HQ  +Q+   +  S  +     L  +Q L EL++GE  + +Q S E
Sbjct: 30  IDHQTSVQQLPGEQPSGEQPSGEHLSGEQPLSELESGEQPSDEQPSGE 77


>gi|11037061 hypothetical protein LOC56683 [Homo sapiens]
          Length = 290

 Score = 27.3 bits (59), Expect = 7.6
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 7/56 (12%)

Query: 107 GIQDLEESFVTVAAVLGHQRKLQKYSSDCESIRRTG------HGGLPSDQKLEELK 156
           G  +LEE  V VA V   + K+Q+  S+ E +   G        GL  DQ +EELK
Sbjct: 20  GSTELEELTVQVARVYNGRLKVQRLCSEMEELAEHGIFLPPNMQGLTDDQ-IEELK 74


>gi|5453980 DnaJ (Hsp40) homolog, subfamily C, member 3 [Homo
           sapiens]
          Length = 504

 Score = 26.9 bits (58), Expect = 9.9
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 112 EESFVTVAAVLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEPDNQQQSSAEGR 171
           E+ F+ +AA        ++  SD E  ++   G  P D + ++   G P ++  +S +G 
Sbjct: 436 EKKFIDIAAA-------KEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGF 488

Query: 172 ELFDSSGNFLYR 183
             F S G F ++
Sbjct: 489 NPFSSGGPFRFK 500


>gi|216548223 synaptic vesicle glycoprotein 2 [Homo sapiens]
          Length = 742

 Score = 26.9 bits (58), Expect = 9.9
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 5/57 (8%)

Query: 104 RNKGIQDLEESFVTVAAVLGHQRKLQKYSSDCESIRRTGHGGLPSDQKLEELKAGEP 160
           R +G QD EE   +  A  GH    + Y  + + I R   GG     K E +  G P
Sbjct: 67  RGEGTQDEEEGGASSDATEGHDEDDEIYEGEYQGIPRAESGG-----KGERMADGAP 118


>gi|19923599 calmin [Homo sapiens]
          Length = 1002

 Score = 26.9 bits (58), Expect = 9.9
 Identities = 16/69 (23%), Positives = 27/69 (39%)

Query: 75  SSKAPNYSTTLKVIESNTYRTNTPRGWKGRNKGIQDLEESFVTVAAVLGHQRKLQKYSSD 134
           S ++PN       +E N  + +     K + K +  +E S       +     L++ SSD
Sbjct: 838 SQESPNLENIANPLEENVTKESISSKKKEKRKHVDHVESSLFVAPGSVQSSDDLEEDSSD 897

Query: 135 CESIRRTGH 143
                RT H
Sbjct: 898 YSIPSRTSH 906


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.131    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,114,844
Number of Sequences: 37866
Number of extensions: 309078
Number of successful extensions: 693
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 680
Number of HSP's gapped (non-prelim): 15
length of query: 184
length of database: 18,247,518
effective HSP length: 96
effective length of query: 88
effective length of database: 14,612,382
effective search space: 1285889616
effective search space used: 1285889616
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.