Guide to the Human Genome
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Search of human proteins with 239748144

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239748144 PREDICTED: hypothetical protein [Homo sapiens]
         (113 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753518 PREDICTED: hypothetical protein [Homo sapiens]           242   4e-65
gi|239748144 PREDICTED: hypothetical protein [Homo sapiens]           242   4e-65
gi|239742042 PREDICTED: hypothetical protein XP_002342398 [Homo ...   242   4e-65
gi|239757552 PREDICTED: similar to hCG2006635, partial [Homo sap...    28   1.2  
gi|19923559 EMSY protein [Homo sapiens]                                28   1.2  
gi|150456460 EPH receptor A10 isofom 3 [Homo sapiens]                  28   1.2  
gi|150456469 EPH receptor A10 isoform 2 [Homo sapiens]                 28   1.2  
gi|38570099 glutamine-rich 1 [Homo sapiens]                            27   2.7  
gi|38570097 glutamine-rich 1 [Homo sapiens]                            27   2.7  
gi|239740689 PREDICTED: hypothetical protein [Homo sapiens]            27   3.5  
gi|239513949 PREDICTED: hypothetical protein [Homo sapiens]            27   3.5  
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ...    27   3.5  
gi|239740910 PREDICTED: hypothetical protein XP_002344083 [Homo ...    27   4.6  
gi|239740847 PREDICTED: hypothetical protein XP_002344050 [Homo ...    27   4.6  
gi|239740794 PREDICTED: hypothetical protein [Homo sapiens]            27   4.6  
gi|239740739 PREDICTED: hypothetical protein [Homo sapiens]            27   4.6  
gi|239740654 PREDICTED: hypothetical protein [Homo sapiens]            27   4.6  
gi|4507835 uridine monophosphate synthase [Homo sapiens]               27   4.6  
gi|93141033 PAX interacting protein 1 [Homo sapiens]                   27   4.6  
gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens]               26   6.0  
gi|41327776 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ...    26   6.0  
gi|20149629 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...    26   6.0  
gi|151108435 BTB (POZ) domain containing 9 isoform b [Homo sapiens]    26   7.8  
gi|151108413 BTB (POZ) domain containing 9 isoform a [Homo sapiens]    26   7.8  
gi|151108411 BTB (POZ) domain containing 9 isoform a [Homo sapiens]    26   7.8  
gi|110681712 hepatoma derived growth factor-like 1 [Homo sapiens]      26   7.8  

>gi|239753518 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score =  242 bits (618), Expect = 4e-65
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE 60
           MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE
Sbjct: 1   MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE 60

Query: 61  QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG 113
           QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG
Sbjct: 61  QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG 113


>gi|239748144 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 113

 Score =  242 bits (618), Expect = 4e-65
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE 60
           MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE
Sbjct: 1   MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE 60

Query: 61  QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG 113
           QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG
Sbjct: 61  QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG 113


>gi|239742042 PREDICTED: hypothetical protein XP_002342398 [Homo
           sapiens]
          Length = 113

 Score =  242 bits (618), Expect = 4e-65
 Identities = 113/113 (100%), Positives = 113/113 (100%)

Query: 1   MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE 60
           MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE
Sbjct: 1   MCVLGATVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWE 60

Query: 61  QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG 113
           QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG
Sbjct: 61  QPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQTWVSRG 113


>gi|239757552 PREDICTED: similar to hCG2006635, partial [Homo
           sapiens]
          Length = 304

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 62  PTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQ----RSHGPKGDGWVPQTWVSRG 113
           P Q Q    GQ L G       PQ Q+   R+     R HG +  G  P +WV  G
Sbjct: 194 PCQQQGGYLGQKLPGRLSEGVGPQLQEGGNRRSARPWRLHGAQYQGPAPGSWVEEG 249


>gi|19923559 EMSY protein [Homo sapiens]
          Length = 1322

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 68   SLQGQHLLGWALSHSTPQQQQCQE 91
            SL   H++   +++STPQQQ+C+E
Sbjct: 1186 SLPSTHMVVAGMANSTPQQQKCRE 1209


>gi|150456460 EPH receptor A10 isofom 3 [Homo sapiens]
          Length = 1008

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 14/78 (17%)

Query: 50  LCWAALLVHWEQPTQHQVSL----QGQHLLGWALSHSTPQQQQC----QERKQRSHG--- 98
           LC A LL  W   T  +V L      Q  LGW    S   ++       +R  R++    
Sbjct: 19  LCLALLLGPWRPGTAEEVILLDSKASQAELGWTALPSNGWEEISGVDEHDRPIRTYQVCN 78

Query: 99  ---PKGDGWVPQTWVSRG 113
              P  D W+   W+SRG
Sbjct: 79  VLEPNQDNWLQTGWISRG 96


>gi|150456469 EPH receptor A10 isoform 2 [Homo sapiens]
          Length = 295

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 14/78 (17%)

Query: 50  LCWAALLVHWEQPTQHQVSL----QGQHLLGWALSHSTPQQQQC----QERKQRSHG--- 98
           LC A LL  W   T  +V L      Q  LGW    S   ++       +R  R++    
Sbjct: 19  LCLALLLGPWRPGTAEEVILLDSKASQAELGWTALPSNGWEEISGVDEHDRPIRTYQVCN 78

Query: 99  ---PKGDGWVPQTWVSRG 113
              P  D W+   W+SRG
Sbjct: 79  VLEPNQDNWLQTGWISRG 96


>gi|38570099 glutamine-rich 1 [Homo sapiens]
          Length = 776

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 7   TVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWEQPTQHQ 66
           T ++   Q    QQV+V V   Q  +     L   + + + T           EQP Q Q
Sbjct: 88  TQQEQQIQVQQPQQVQVQVQVQQSPQQVSAQLSPQLTVHQPT-----------EQPIQVQ 136

Query: 67  VSLQGQHLLGWALSHSTPQQQ 87
           V +QGQ     A S  TP  Q
Sbjct: 137 VQIQGQAPQSAAPSIQTPSLQ 157


>gi|38570097 glutamine-rich 1 [Homo sapiens]
          Length = 776

 Score = 27.3 bits (59), Expect = 2.7
 Identities = 24/81 (29%), Positives = 32/81 (39%), Gaps = 11/81 (13%)

Query: 7   TVEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDRTTVLCWAALLVHWEQPTQHQ 66
           T ++   Q    QQV+V V   Q  +     L   + + + T           EQP Q Q
Sbjct: 88  TQQEQQIQVQQPQQVQVQVQVQQSPQQVSAQLSPQLTVHQPT-----------EQPIQVQ 136

Query: 67  VSLQGQHLLGWALSHSTPQQQ 87
           V +QGQ     A S  TP  Q
Sbjct: 137 VQIQGQAPQSAAPSIQTPSLQ 157


>gi|239740689 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 102

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 60  EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
           E+P  H        L+G A+     +QQQ QER+Q+    +G+   P+
Sbjct: 54  EEPMHHD-----DRLVGLAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96


>gi|239513949 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 102

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 60  EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
           E+P  H        L+G A+     +QQQ QER+Q+    +G+   P+
Sbjct: 54  EEPMHHD-----DRLVGLAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96


>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
            sapiens]
          Length = 5537

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 66   QVSLQGQHLLGWALSHSTPQQQQCQERKQRS 96
            Q++ QGQ L+G  L  +  QQQQ Q ++Q S
Sbjct: 3839 QLAQQGQGLMGHRLVTAQQQQQQQQHQQQGS 3869



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 39   DATVLIDRTTVLCWAALLVHWEQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHG 98
            D+ +L +R   L    + +  +   Q Q   Q QHLLG  ++    QQQ    +  ++ G
Sbjct: 3712 DSRLLQERQLQLQQQRMQLAQKLQQQQQQQQQQQHLLG-QVAIQQQQQQGPGVQTNQALG 3770

Query: 99   PKGDGWVP 106
            PK  G +P
Sbjct: 3771 PKPQGLMP 3778


>gi|239740910 PREDICTED: hypothetical protein XP_002344083 [Homo
           sapiens]
          Length = 102

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 60  EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
           E+P  H        L+G A+     +QQQ QER+Q+    +G+   P+
Sbjct: 54  EEPMHHD-----DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96


>gi|239740847 PREDICTED: hypothetical protein XP_002344050 [Homo
           sapiens]
          Length = 102

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 60  EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
           E+P  H        L+G A+     +QQQ QER+Q+    +G+   P+
Sbjct: 54  EEPMHHD-----DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96


>gi|239740794 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 102

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 60  EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
           E+P  H        L+G A+     +QQQ QER+Q+    +G+   P+
Sbjct: 54  EEPMHHD-----DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96


>gi|239740739 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 102

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 60  EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
           E+P  H        L+G A+     +QQQ QER+Q+    +G+   P+
Sbjct: 54  EEPMHHD-----DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96


>gi|239740654 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 102

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 60  EQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKGDGWVPQ 107
           E+P  H        L+G A+     +QQQ QER+Q+    +G+   P+
Sbjct: 54  EEPMHHD-----DRLVGRAVGRGGCKQQQRQERQQKQDPRRGEPLPPE 96


>gi|4507835 uridine monophosphate synthase [Homo sapiens]
          Length = 480

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)

Query: 8   VEDVCTQAHARQQVRVTVDAVQCKKHGLQALDATVLIDR 46
           +EDV T   +   V  TV+ +Q  K GL+  DA VL+DR
Sbjct: 122 IEDVVTSGSS---VLETVEVLQ--KEGLKVTDAIVLLDR 155


>gi|93141033 PAX interacting protein 1 [Homo sapiens]
          Length = 1069

 Score = 26.6 bits (57), Expect = 4.6
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 57  VHWEQPTQHQVSLQGQHL--LGWALSHSTPQQQQCQERKQRSHGP 99
           +H +Q  Q   S    HL     AL H  P QQ  Q+++Q+   P
Sbjct: 540 MHQQQQQQQMQSQTAPHLSQTSQALQHQVPPQQPPQQQQQQQPPP 584



 Score = 25.8 bits (55), Expect = 7.8
 Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 54  ALLVHWEQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQR 95
           AL   + Q  QHQ  LQ Q L      HS  QQQQ Q+ +Q+
Sbjct: 496 ALQQQFHQLQQHQ--LQQQQLAQLQQQHSLLQQQQQQQIQQQ 535


>gi|157388969 nei endonuclease VIII-like 3 [Homo sapiens]
          Length = 605

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 7/50 (14%)

Query: 12  CTQAHARQQV-------RVTVDAVQCKKHGLQALDATVLIDRTTVLCWAA 54
           C Q H R  V       R+T     C+K   Q +D   L  R T++ W +
Sbjct: 254 CGQCHCRITVCRFGDNNRMTYFCPHCQKENPQHVDICKLPTRNTIISWTS 303


>gi|41327776 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2
          [Homo sapiens]
          Length = 406

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)

Query: 47 TTVLCWAALLVHWEQPTQHQV-----SLQGQHLLGWA 78
          T VLC A   + W +PT+ Q+     +LQG+ ++G A
Sbjct: 32 TDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLA 68


>gi|20149629 DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1
          [Homo sapiens]
          Length = 455

 Score = 26.2 bits (56), Expect = 6.0
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 5/37 (13%)

Query: 47 TTVLCWAALLVHWEQPTQHQV-----SLQGQHLLGWA 78
          T VLC A   + W +PT+ Q+     +LQG+ ++G A
Sbjct: 32 TDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLA 68


>gi|151108435 BTB (POZ) domain containing 9 isoform b [Homo sapiens]
          Length = 544

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 41  TVLIDRTTVLCWAALLVHWEQPTQHQVSLQGQHLLGWALSH----STPQQQQCQERKQRS 96
           T++ DRT V C +   V +E+     + + G H     + H      P+QQ  Q+ +   
Sbjct: 442 TMVADRTKVSCKSWQSVTFERQPASFIRIVGTHNTANEVFHCVHFECPEQQSSQKEENSE 501

Query: 97  HGPKGD 102
               GD
Sbjct: 502 ESGTGD 507


>gi|151108413 BTB (POZ) domain containing 9 isoform a [Homo sapiens]
          Length = 612

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 41  TVLIDRTTVLCWAALLVHWEQPTQHQVSLQGQHLLGWALSH----STPQQQQCQERKQRS 96
           T++ DRT V C +   V +E+     + + G H     + H      P+QQ  Q+ +   
Sbjct: 510 TMVADRTKVSCKSWQSVTFERQPASFIRIVGTHNTANEVFHCVHFECPEQQSSQKEENSE 569

Query: 97  HGPKGD 102
               GD
Sbjct: 570 ESGTGD 575


>gi|151108411 BTB (POZ) domain containing 9 isoform a [Homo sapiens]
          Length = 612

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 41  TVLIDRTTVLCWAALLVHWEQPTQHQVSLQGQHLLGWALSH----STPQQQQCQERKQRS 96
           T++ DRT V C +   V +E+     + + G H     + H      P+QQ  Q+ +   
Sbjct: 510 TMVADRTKVSCKSWQSVTFERQPASFIRIVGTHNTANEVFHCVHFECPEQQSSQKEENSE 569

Query: 97  HGPKGD 102
               GD
Sbjct: 570 ESGTGD 575


>gi|110681712 hepatoma derived growth factor-like 1 [Homo sapiens]
          Length = 251

 Score = 25.8 bits (55), Expect = 7.8
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query: 52  WAALLVHWEQPTQHQVSLQGQHLLGWALSHSTPQQQQCQERKQRSHGPKG 101
           W A + H  QP ++QV   G H   +         ++C+E+  + +  +G
Sbjct: 25  WPARIEHMTQPNRYQVFFFGTHETAFLSPKRLFPYKECKEKFGKPNKRRG 74


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.130    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,901,140
Number of Sequences: 37866
Number of extensions: 197645
Number of successful extensions: 542
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 533
Number of HSP's gapped (non-prelim): 30
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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