Guide to the Human Genome
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Name: LOC100289270 Sequence: fasta or formatted (113aa) NCBI GI: 239742042
Description:

PREDICTED: hypothetical protein XP_002342398

Not currently referenced in the text

Other entries for this name:
alt mRNA {113aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0          9           2
 C cysteine            4.4          5           1
 D aspartate           4.4          5           1
 E glutamate           2.7          3           1
 F phenylalanine       0.0          0           0
 G glycine             7.1          8           1
 H histidine           6.2          7           1
 I isoleucine          0.9          1           1
 K lysine              3.5          4           2
 L leucine             9.7         11           2
 M methionine          0.9          1           1
 N asparagine          0.0          0           0
 P proline             3.5          4           1
 Q glutamine          15.0         17           4
 R arginine            5.3          6           1
 S serine              4.4          5           1
 T threonine           8.0          9           2
 V valine             11.5         13           1
 W tryptophan          4.4          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342398 
LOC100293203          1.000   PREDICTED: hypothetical protein 
LOC100289270          1.000   PREDICTED: hypothetical protein 
LOC100291900          0.014   PREDICTED: similar to hCG2006635, partial 
C11orf30              0.014   EMSY protein 
EPHA10                0.014   EPH receptor A10 isofom 3 
EPHA10                0.014   EPH receptor A10 isoform 2 
QRICH1                0.009   glutamine-rich 1 
QRICH1                0.009   glutamine-rich 1 
LOC100294158          0.009   PREDICTED: hypothetical protein 
LOC100133352          0.009   PREDICTED: hypothetical protein 
MLL2                  0.009   myeloid/lymphoid or mixed-lineage leukemia 2 
LOC100294313          0.009   PREDICTED: hypothetical protein XP_002344083 
LOC100294272          0.009   PREDICTED: hypothetical protein XP_002344050 
LOC100294222          0.009   PREDICTED: hypothetical protein 
LOC100294186          0.009   PREDICTED: hypothetical protein 
LOC100294105          0.009   PREDICTED: hypothetical protein 
UMPS                  0.009   uridine monophosphate synthase 
PAXIP1                0.009   PAX interacting protein 1 
NEIL3                 0.005   nei endonuclease VIII-like 3 
DDX47                 0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 2 ...
DDX47                 0.005   DEAD (Asp-Glu-Ala-Asp) box polypeptide 47 isoform 1 ...
BTBD9                 0.005   BTB (POZ) domain containing 9 isoform b 
BTBD9                 0.005   BTB (POZ) domain containing 9 isoform a 
BTBD9                 0.005   BTB (POZ) domain containing 9 isoform a 
HDGFL1                0.005   hepatoma derived growth factor-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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