Guide to the Human Genome
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Name: LOC100291419 Sequence: fasta or formatted (116aa) NCBI GI: 239751968
Description:

PREDICTED: hypothetical protein XP_002348050

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9          8           2
 C cysteine            1.7          2           1
 D aspartate           4.3          5           1
 E glutamate           1.7          2           1
 F phenylalanine       0.9          1           1
 G glycine            12.1         14           2
 H histidine           0.9          1           1
 I isoleucine          1.7          2           1
 K lysine              3.4          4           1
 L leucine            12.1         14           2
 M methionine          2.6          3           1
 N asparagine          2.6          3           1
 P proline             8.6         10           1
 Q glutamine           7.8          9           3
 R arginine            5.2          6           2
 S serine             12.1         14           2
 T threonine           6.0          7           1
 V valine              6.0          7           2
 W tryptophan          2.6          3           1
 Y tyrosine            0.9          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348050 
LOC100293024          1.000   PREDICTED: similar to hCG1812873 
LOC100289198          1.000   PREDICTED: hypothetical protein XP_002344213 
POLM                  0.014   DNA-directed DNA polymerase mu 
LOC100293785          0.014   PREDICTED: hypothetical protein 
LOC100290957          0.014   PREDICTED: hypothetical protein XP_002346551 
LOC100288488          0.014   PREDICTED: hypothetical protein XP_002342387 
LOC100292655          0.009   PREDICTED: similar to armadillo repeat containing, ...
KLHL1                 0.009   kelch-like 1 protein 
GAS2L2                0.009   growth arrest-specific 2 like 2 
PLCE1                 0.005   phospholipase C, epsilon 1 
LOC100292240          0.005   PREDICTED: hypothetical protein 
LOC100289699          0.005   PREDICTED: hypothetical protein XP_002347072 
LOC100287297          0.005   PREDICTED: hypothetical protein XP_002342926 
DCBLD1                0.005   discoidin, CUB and LCCL domain containing 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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