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Search of human proteins with 239747764
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747764 PREDICTED: hypothetical protein XP_002348243 [Homo
sapiens]
(65 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747764 PREDICTED: hypothetical protein XP_002348243 [Homo ... 138 1e-33
gi|239741630 PREDICTED: hypothetical protein XP_002342267 [Homo ... 138 1e-33
gi|239753190 PREDICTED: similar to proliferation-inducing protei... 136 3e-33
gi|239754054 PREDICTED: ankyrin repeat domain 31 [Homo sapiens] 38 0.002
gi|239748581 PREDICTED: ankyrin repeat domain 31 [Homo sapiens] 38 0.002
gi|239742600 PREDICTED: ankyrin repeat domain 31 [Homo sapiens] 38 0.002
gi|169160876 PREDICTED: similar to hCG1648021 [Homo sapiens] 29 0.92
gi|239747398 PREDICTED: similar to hCG1648021 [Homo sapiens] 29 0.92
gi|239741224 PREDICTED: similar to hCG1648021 [Homo sapiens] 29 0.92
gi|122891870 melanoma inhibitory activity family, member 3 [Homo... 26 6.0
gi|59933284 RUN domain containing 2B [Homo sapiens] 26 6.0
gi|239756972 PREDICTED: hypothetical protein XP_002345128 [Homo ... 26 7.8
gi|239751481 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|239745979 PREDICTED: hypothetical protein XP_002343633 [Homo ... 26 7.8
gi|140561027 CASK-interacting protein CIP98 isoform 2 [Homo sapi... 26 7.8
gi|140561024 CASK-interacting protein CIP98 isoform 1 [Homo sapi... 26 7.8
gi|117168263 RasGEF domain family, member 1A [Homo sapiens] 26 7.8
>gi|239747764 PREDICTED: hypothetical protein XP_002348243 [Homo
sapiens]
Length = 65
Score = 138 bits (347), Expect = 1e-33
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MPPHSSLGNRVRLCLEKKKKEKKIPQIISCRDFTNQAYFADNFPGIMVEGITAQIHSSHK 60
MPPHSSLGNRVRLCLEKKKKEKKIPQIISCRDFTNQAYFADNFPGIMVEGITAQIHSSHK
Sbjct: 1 MPPHSSLGNRVRLCLEKKKKEKKIPQIISCRDFTNQAYFADNFPGIMVEGITAQIHSSHK 60
Query: 61 NSQQH 65
NSQQH
Sbjct: 61 NSQQH 65
>gi|239741630 PREDICTED: hypothetical protein XP_002342267 [Homo
sapiens]
Length = 65
Score = 138 bits (347), Expect = 1e-33
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MPPHSSLGNRVRLCLEKKKKEKKIPQIISCRDFTNQAYFADNFPGIMVEGITAQIHSSHK 60
MPPHSSLGNRVRLCLEKKKKEKKIPQIISCRDFTNQAYFADNFPGIMVEGITAQIHSSHK
Sbjct: 1 MPPHSSLGNRVRLCLEKKKKEKKIPQIISCRDFTNQAYFADNFPGIMVEGITAQIHSSHK 60
Query: 61 NSQQH 65
NSQQH
Sbjct: 61 NSQQH 65
>gi|239753190 PREDICTED: similar to proliferation-inducing protein
25 [Homo sapiens]
Length = 65
Score = 136 bits (343), Expect = 3e-33
Identities = 64/65 (98%), Positives = 65/65 (100%)
Query: 1 MPPHSSLGNRVRLCLEKKKKEKKIPQIISCRDFTNQAYFADNFPGIMVEGITAQIHSSHK 60
MPPHSSLGNRVRLCL+KKKKEKKIPQIISCRDFTNQAYFADNFPGIMVEGITAQIHSSHK
Sbjct: 1 MPPHSSLGNRVRLCLKKKKKEKKIPQIISCRDFTNQAYFADNFPGIMVEGITAQIHSSHK 60
Query: 61 NSQQH 65
NSQQH
Sbjct: 61 NSQQH 65
>gi|239754054 PREDICTED: ankyrin repeat domain 31 [Homo sapiens]
Length = 1873
Score = 37.7 bits (86), Expect = 0.002
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 18 KKKEKKIPQIISCRDFTNQAYFADNF----PGIMVEGITAQIHSSH-KNSQQ 64
K EK +P+I+ C D TN A NF P +M++G +HS+ KN +Q
Sbjct: 407 KMPEKILPKILGCEDLTNNNSSAQNFRMQDPALMIDGKEKNMHSARFKNGKQ 458
>gi|239748581 PREDICTED: ankyrin repeat domain 31 [Homo sapiens]
Length = 1873
Score = 37.7 bits (86), Expect = 0.002
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 18 KKKEKKIPQIISCRDFTNQAYFADNF----PGIMVEGITAQIHSSH-KNSQQ 64
K EK +P+I+ C D TN A NF P +M++G +HS+ KN +Q
Sbjct: 407 KMPEKILPKILGCEDLTNNNSSAQNFRMQDPALMIDGKEKNMHSARFKNGKQ 458
>gi|239742600 PREDICTED: ankyrin repeat domain 31 [Homo sapiens]
Length = 1873
Score = 37.7 bits (86), Expect = 0.002
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Query: 18 KKKEKKIPQIISCRDFTNQAYFADNF----PGIMVEGITAQIHSSH-KNSQQ 64
K EK +P+I+ C D TN A NF P +M++G +HS+ KN +Q
Sbjct: 407 KMPEKILPKILGCEDLTNNNSSAQNFRMQDPALMIDGKEKNMHSARFKNGKQ 458
>gi|169160876 PREDICTED: similar to hCG1648021 [Homo sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 0.92
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 4 HSSLGNRVRLCLEKKK 19
HSSLG+R RLCL+K++
Sbjct: 6 HSSLGDRARLCLKKER 21
>gi|239747398 PREDICTED: similar to hCG1648021 [Homo sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 0.92
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 4 HSSLGNRVRLCLEKKK 19
HSSLG+R RLCL+K++
Sbjct: 6 HSSLGDRARLCLKKER 21
>gi|239741224 PREDICTED: similar to hCG1648021 [Homo sapiens]
Length = 183
Score = 28.9 bits (63), Expect = 0.92
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 4 HSSLGNRVRLCLEKKK 19
HSSLG+R RLCL+K++
Sbjct: 6 HSSLGDRARLCLKKER 21
>gi|122891870 melanoma inhibitory activity family, member 3 [Homo
sapiens]
Length = 1907
Score = 26.2 bits (56), Expect = 6.0
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 16 EKKKKEKKIPQIISCRDFTNQAYFADNFPGIMVEGITAQIHSSHKNSQ 63
E K+ + P+ + + + F++N + E T Q H SH NSQ
Sbjct: 170 ELSKEREPEPEPVEANSEESDSVFSENTEDLQ-EQFTTQKHHSHANSQ 216
>gi|59933284 RUN domain containing 2B [Homo sapiens]
Length = 249
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 14 CLEKKKKEKKIPQIISCRDFTNQAYFADNFPGIMVEGITAQIHSSHKN 61
C +++KK+K++ IIS D ++ D F G +++ +S H +
Sbjct: 100 CKKERKKKKQVTNIISFDDEEDEQNSGDMFKKTPGAGESSEDNSDHSS 147
>gi|239756972 PREDICTED: hypothetical protein XP_002345128 [Homo
sapiens]
Length = 128
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 2 PPHSSLGNRVRLCLEKKKK 20
P SSLG+R R C +KKKK
Sbjct: 3 PLCSSLGHRARPCQKKKKK 21
>gi|239751481 PREDICTED: hypothetical protein [Homo sapiens]
Length = 128
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 2 PPHSSLGNRVRLCLEKKKK 20
P SSLG+R R C +KKKK
Sbjct: 3 PLCSSLGHRARPCQKKKKK 21
>gi|239745979 PREDICTED: hypothetical protein XP_002343633 [Homo
sapiens]
Length = 128
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 2 PPHSSLGNRVRLCLEKKKK 20
P SSLG+R R C +KKKK
Sbjct: 3 PLCSSLGHRARPCQKKKKK 21
>gi|140561027 CASK-interacting protein CIP98 isoform 2 [Homo
sapiens]
Length = 524
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 5 SSLGNRVRLCLEKKKKEKKIPQIISCRDFTNQAYFADNFPG 45
SSLGN+ R+ LE++ + +++ ++ AY+ D + G
Sbjct: 33 SSLGNQTRVLLEEQAR-----HLLNEQEHATMAYYLDEYRG 68
>gi|140561024 CASK-interacting protein CIP98 isoform 1 [Homo
sapiens]
Length = 907
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 5/41 (12%)
Query: 5 SSLGNRVRLCLEKKKKEKKIPQIISCRDFTNQAYFADNFPG 45
SSLGN+ R+ LE++ + +++ ++ AY+ D + G
Sbjct: 416 SSLGNQTRVLLEEQAR-----HLLNEQEHATMAYYLDEYRG 451
>gi|117168263 RasGEF domain family, member 1A [Homo sapiens]
Length = 481
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 1 MPPHSSLGNRVRLCLEKKKKEKKIPQIISCRDFT 34
MPPH L ++C+E+K++ + P+ + F+
Sbjct: 81 MPPHDLLARVGQICVEQKQQLEAGPEKAKLKSFS 114
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,869,784
Number of Sequences: 37866
Number of extensions: 95659
Number of successful extensions: 182
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 168
Number of HSP's gapped (non-prelim): 17
length of query: 65
length of database: 18,247,518
effective HSP length: 38
effective length of query: 27
effective length of database: 16,808,610
effective search space: 453832470
effective search space used: 453832470
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.