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Search of human proteins with 239747558
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747558 PREDICTED: similar to hCG1811644 [Homo sapiens]
(245 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752981 PREDICTED: similar to hCG1811644 [Homo sapiens] 497 e-141
gi|239747558 PREDICTED: similar to hCG1811644 [Homo sapiens] 497 e-141
gi|239741432 PREDICTED: similar to hCG1811644 [Homo sapiens] 497 e-141
gi|166197698 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylgluc... 118 4e-27
gi|16915936 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylgluco... 70 2e-12
gi|7710152 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucos... 70 2e-12
gi|237512959 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylgluc... 64 1e-10
gi|6912502 alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucos... 64 1e-10
gi|20302168 toll-like receptor 8 [Homo sapiens] 30 1.5
gi|10834994 interleukin 11 precursor [Homo sapiens] 30 1.9
gi|149363666 phosphodiesterase 4C isoform PDE4C-2 [Homo sapiens] 29 3.3
gi|149363646 phosphodiesterase 4C isoform PDE4C-3 [Homo sapiens] 29 3.3
gi|115529445 phosphodiesterase 4C isoform PDE4C-1 [Homo sapiens] 29 3.3
gi|110611156 laminin, gamma 3 precursor [Homo sapiens] 28 5.6
gi|28466983 leprecan-like 2 [Homo sapiens] 28 7.3
gi|186910317 solute carrier family 12, member 3 isoform 2 [Homo ... 28 9.5
gi|186910315 solute carrier family 12, member 3 isoform 1 [Homo ... 28 9.5
>gi|239752981 PREDICTED: similar to hCG1811644 [Homo sapiens]
Length = 245
Score = 497 bits (1280), Expect = e-141
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60
MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF
Sbjct: 1 MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60
Query: 61 SRLNTFFLLFHKDTPTHLLLSEFRLLLAQNIPIHFSPSVFHHTGNYSVFDDMCFSVEKDR 120
SRLNTFFLLFHKDTPTHLLLSEFRLLLAQNIPIHFSPSVFHHTGNYSVFDDMCFSVEKDR
Sbjct: 61 SRLNTFFLLFHKDTPTHLLLSEFRLLLAQNIPIHFSPSVFHHTGNYSVFDDMCFSVEKDR 120
Query: 121 VFGEPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNPLKGNYLTVILDRPQKNTQIA 180
VFGEPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNPLKGNYLTVILDRPQKNTQIA
Sbjct: 121 VFGEPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNPLKGNYLTVILDRPQKNTQIA 180
Query: 181 VGRYRLQQGQVEPGYDPQEDPKSCARYALLGPLVGGNLDQVVFSEEESVEQLNCIRLLVL 240
VGRYRLQQGQVEPGYDPQEDPKSCARYALLGPLVGGNLDQVVFSEEESVEQLNCIRLLVL
Sbjct: 181 VGRYRLQQGQVEPGYDPQEDPKSCARYALLGPLVGGNLDQVVFSEEESVEQLNCIRLLVL 240
Query: 241 ASQES 245
ASQES
Sbjct: 241 ASQES 245
>gi|239747558 PREDICTED: similar to hCG1811644 [Homo sapiens]
Length = 245
Score = 497 bits (1280), Expect = e-141
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60
MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF
Sbjct: 1 MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60
Query: 61 SRLNTFFLLFHKDTPTHLLLSEFRLLLAQNIPIHFSPSVFHHTGNYSVFDDMCFSVEKDR 120
SRLNTFFLLFHKDTPTHLLLSEFRLLLAQNIPIHFSPSVFHHTGNYSVFDDMCFSVEKDR
Sbjct: 61 SRLNTFFLLFHKDTPTHLLLSEFRLLLAQNIPIHFSPSVFHHTGNYSVFDDMCFSVEKDR 120
Query: 121 VFGEPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNPLKGNYLTVILDRPQKNTQIA 180
VFGEPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNPLKGNYLTVILDRPQKNTQIA
Sbjct: 121 VFGEPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNPLKGNYLTVILDRPQKNTQIA 180
Query: 181 VGRYRLQQGQVEPGYDPQEDPKSCARYALLGPLVGGNLDQVVFSEEESVEQLNCIRLLVL 240
VGRYRLQQGQVEPGYDPQEDPKSCARYALLGPLVGGNLDQVVFSEEESVEQLNCIRLLVL
Sbjct: 181 VGRYRLQQGQVEPGYDPQEDPKSCARYALLGPLVGGNLDQVVFSEEESVEQLNCIRLLVL 240
Query: 241 ASQES 245
ASQES
Sbjct: 241 ASQES 245
>gi|239741432 PREDICTED: similar to hCG1811644 [Homo sapiens]
Length = 245
Score = 497 bits (1280), Expect = e-141
Identities = 245/245 (100%), Positives = 245/245 (100%)
Query: 1 MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60
MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF
Sbjct: 1 MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60
Query: 61 SRLNTFFLLFHKDTPTHLLLSEFRLLLAQNIPIHFSPSVFHHTGNYSVFDDMCFSVEKDR 120
SRLNTFFLLFHKDTPTHLLLSEFRLLLAQNIPIHFSPSVFHHTGNYSVFDDMCFSVEKDR
Sbjct: 61 SRLNTFFLLFHKDTPTHLLLSEFRLLLAQNIPIHFSPSVFHHTGNYSVFDDMCFSVEKDR 120
Query: 121 VFGEPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNPLKGNYLTVILDRPQKNTQIA 180
VFGEPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNPLKGNYLTVILDRPQKNTQIA
Sbjct: 121 VFGEPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNPLKGNYLTVILDRPQKNTQIA 180
Query: 181 VGRYRLQQGQVEPGYDPQEDPKSCARYALLGPLVGGNLDQVVFSEEESVEQLNCIRLLVL 240
VGRYRLQQGQVEPGYDPQEDPKSCARYALLGPLVGGNLDQVVFSEEESVEQLNCIRLLVL
Sbjct: 181 VGRYRLQQGQVEPGYDPQEDPKSCARYALLGPLVGGNLDQVVFSEEESVEQLNCIRLLVL 240
Query: 241 ASQES 245
ASQES
Sbjct: 241 ASQES 245
>gi|166197698 alpha-1,3-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase C [Homo sapiens]
Length = 478
Score = 118 bits (296), Expect = 4e-27
Identities = 76/257 (29%), Positives = 126/257 (49%), Gaps = 14/257 (5%)
Query: 1 MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60
+NF +N SDY+++LED + C+ F AI +++ + WV LEFS L GK++ + D
Sbjct: 210 LNFCANTSDYYVMLEDDVRCSKNFLTAIKKVIASLEGTYWVTLEFSKLGYIGKLYHSHDL 269
Query: 61 SRLNTFFLLFHKDTPTHLLLSEFRLLLAQNIPIHFSPSVFHHTGNYSVFDDMCFSVEKD- 119
RL F L+F+++ P LL+ FR LLAQ I F PS+F H G YS + ++ D
Sbjct: 270 PRLAHFLLMFYQEMPCDWLLTHFRGLLAQKNVIRFKPSLFQHMGYYSSYKGTENKLKDDD 329
Query: 120 ---RVFGEPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNPLKGNYLTVILDRPQKN 176
F PDNP A++ T+M Y+ E + P G+ ++ + P
Sbjct: 330 FEEESFDIPDNPPASLYTNMNVFENYEASKAYSSVDEYFWGKPPSTGDVFVIVFENPIII 389
Query: 177 TQIAVGRYR-------LQQGQVEPGYD--PQEDPKSCARYALLGPLVGGNLDQVVFSEEE 227
+I V L G ++ G + P + + C+ Y LG GN + +++
Sbjct: 390 KKIKVNTGTEDRQNDILHHGALDVGENVMPSKQRRQCSTYLRLGEFKNGNFEMSGVNQKI 449
Query: 228 SVEQLNCIRLLVLASQE 244
+ ++C+R+ V +Q+
Sbjct: 450 PFD-IHCMRIYVTKTQK 465
>gi|16915936 alpha-1,3-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase B isoform 2 [Homo
sapiens]
Length = 563
Score = 69.7 bits (169), Expect = 2e-12
Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 27/212 (12%)
Query: 1 MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60
M +A + Y++ LED I P + + + + W+ILEFS L GK+F + D
Sbjct: 268 MMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDL 327
Query: 61 SRLNTFFLLFHKDTPTHLLLSEFRLLLA--------------QNIPIHFSPSVFHHTGNY 106
S + F L+F++D P LL + N+ I F PS+F H G +
Sbjct: 328 SLIVEFILMFYRDKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTH 387
Query: 107 SVFDDMCFSVEKDRVFG------EPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNP 160
S + KD+ FG E NP A V T + + L+ Y L ++ + P
Sbjct: 388 SSLAGKIQKL-KDKDFGKQALRKEHVNPPAEVSTSLKTYQHFTLEKAY-LREDFFWAFTP 445
Query: 161 LKGNYLTVILDRPQKNTQIAVGRYRLQQGQVE 192
G+++ +P + + R+ + G +E
Sbjct: 446 AAGDFIRFRFFQP-----LRLERFFFRSGNIE 472
>gi|7710152 alpha-1,3-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase B isoform 1 [Homo
sapiens]
Length = 548
Score = 69.7 bits (169), Expect = 2e-12
Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 27/212 (12%)
Query: 1 MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60
M +A + Y++ LED I P + + + + W+ILEFS L GK+F + D
Sbjct: 253 MMYAQSKGIYYVQLEDDIVAKPNYLSTMKNFALQQPSEDWMILEFSQLGFIGKMFKSLDL 312
Query: 61 SRLNTFFLLFHKDTPTHLLLSEFRLLLA--------------QNIPIHFSPSVFHHTGNY 106
S + F L+F++D P LL + N+ I F PS+F H G +
Sbjct: 313 SLIVEFILMFYRDKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFKPSLFQHVGTH 372
Query: 107 SVFDDMCFSVEKDRVFG------EPDNPVATVLTDMVSMLAVILQYTYTLNKEGYSTLNP 160
S + KD+ FG E NP A V T + + L+ Y L ++ + P
Sbjct: 373 SSLAGKIQKL-KDKDFGKQALRKEHVNPPAEVSTSLKTYQHFTLEKAY-LREDFFWAFTP 430
Query: 161 LKGNYLTVILDRPQKNTQIAVGRYRLQQGQVE 192
G+++ +P + + R+ + G +E
Sbjct: 431 AAGDFIRFRFFQP-----LRLERFFFRSGNIE 457
>gi|237512959 alpha-1,3-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase A isoform 2 [Homo
sapiens]
Length = 423
Score = 63.9 bits (154), Expect = 1e-10
Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 32/217 (14%)
Query: 1 MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60
M +A Y++ LED I + I + W+ILEFS L GK+F D
Sbjct: 118 MMYAQEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILEFSQLGFIGKMFQAPDL 177
Query: 61 SRLNTFFLLFHKDTPTHLLLSEFRLLLA--------------QNIPIHFSPSVFHHTGNY 106
+ + F +F+K+ P LL + N+ I F PS+F H G +
Sbjct: 178 TLIVEFIFMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLH 237
Query: 107 SVFDDMCFSVEK--DRVFGEP------DNPVATVLTDMVSMLAVILQYTYTLNKEGYSTL 158
S + ++K D+ + +P NP A V T + L+ TY + ++ + +
Sbjct: 238 S---SLSGKIQKLTDKDYMKPLLLKIHVNPPAEVSTSLKVYQGHTLEKTY-MGEDFFWAI 293
Query: 159 NPLKGNYLTVILDRPQKNTQIAVGRYRLQQG-QVEPG 194
P+ G+Y+ D+P + V Y G Q PG
Sbjct: 294 TPIAGDYILFKFDKP-----VNVESYLFHSGNQEHPG 325
>gi|6912502 alpha-1,3-mannosyl-glycoprotein
4-beta-N-acetylglucosaminyltransferase A isoform 1 [Homo
sapiens]
Length = 535
Score = 63.9 bits (154), Expect = 1e-10
Identities = 56/217 (25%), Positives = 90/217 (41%), Gaps = 32/217 (14%)
Query: 1 MNFASNLSDYFLLLEDHIHCTPKFAAAISSALSAWKELPWVILEFSHLSISGKVFCTSDF 60
M +A Y++ LED I + I + W+ILEFS L GK+F D
Sbjct: 246 MMYAQEKGIYYIQLEDDIIVKQNYFNTIKNFALQLSSEEWMILEFSQLGFIGKMFQAPDL 305
Query: 61 SRLNTFFLLFHKDTPTHLLLSEFRLLLA--------------QNIPIHFSPSVFHHTGNY 106
+ + F +F+K+ P LL + N+ I F PS+F H G +
Sbjct: 306 TLIVEFIFMFYKEKPIDWLLDHILWVKVCNPEKDAKHCDRQKANLRIRFRPSLFQHVGLH 365
Query: 107 SVFDDMCFSVEK--DRVFGEP------DNPVATVLTDMVSMLAVILQYTYTLNKEGYSTL 158
S + ++K D+ + +P NP A V T + L+ TY + ++ + +
Sbjct: 366 S---SLSGKIQKLTDKDYMKPLLLKIHVNPPAEVSTSLKVYQGHTLEKTY-MGEDFFWAI 421
Query: 159 NPLKGNYLTVILDRPQKNTQIAVGRYRLQQG-QVEPG 194
P+ G+Y+ D+P + V Y G Q PG
Sbjct: 422 TPIAGDYILFKFDKP-----VNVESYLFHSGNQEHPG 453
>gi|20302168 toll-like receptor 8 [Homo sapiens]
Length = 1041
Score = 30.4 bits (67), Expect = 1.5
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 76 THLLLSEFR-LLLAQNIPIHFSPSVFHHTGN-------YSVFDDMCFSVEKDRVFGEPDN 127
TH+ F+ L I ++ +P+V H GN ++ D +++ R DN
Sbjct: 76 THITNESFQGLQNLTKINLNHNPNVQHQNGNPGIQSNGLNITDGAFLNLKNLRELLLEDN 135
Query: 128 PVATV---LTDMVSMLAVILQYTYTLNKEGYSTLNPLKGNYL 166
+ + L + ++ L++I Y + KEG S L LK YL
Sbjct: 136 QLPQIPSGLPESLTELSLIQNNIYNITKEGISRLINLKNLYL 177
>gi|10834994 interleukin 11 precursor [Homo sapiens]
Length = 199
Score = 30.0 bits (66), Expect = 1.9
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 7/89 (7%)
Query: 132 VLTDMVSMLAVILQYTYTLNKEGYSTLNPLKGNY--LTVILDRPQKNTQIAVGRYRLQQG 189
VLT + + L L++ L + G S+L L+ L LDR + Q+ + R L Q
Sbjct: 93 VLTRLRADLLSYLRHVQWLRRAGGSSLKTLEPELGTLQARLDRLLRRLQLLMSRLALPQP 152
Query: 190 QVEPGYDPQEDPKSC-----ARYALLGPL 213
+P P P S A +A+LG L
Sbjct: 153 PPDPPAPPLAPPSSAWGGIRAAHAILGGL 181
>gi|149363666 phosphodiesterase 4C isoform PDE4C-2 [Homo sapiens]
Length = 606
Score = 29.3 bits (64), Expect = 3.3
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 20/166 (12%)
Query: 4 ASNLSDYFLLLEDHIHCTPKF-----AAAISSALSAWKELPWVILEFSHLSISGKVFCTS 58
A L+ Y L+LE H H + AA ++ + P + F+ L I +F ++
Sbjct: 261 ADTLATYLLMLEGHYHANVAYHNSLHAADVAQSTHVLLATPALEAVFTDLEILAALFASA 320
Query: 59 ----DFSRLNTFFL--------LFHKDT---PTHLLLSEFRLLLAQNIPIHFSPSVFHHT 103
D ++ FL L + D H L F+LL A+N I + S
Sbjct: 321 IHDVDHPGVSNQFLINTNSELALMYNDASVLENHHLAVGFKLLQAENCDIFQNLSAKQRL 380
Query: 104 GNYSVFDDMCFSVEKDRVFGEPDNPVATVLTDMVSMLAVILQYTYT 149
+ DM + + + + V T V+ L V+L Y+
Sbjct: 381 SLRRMVIDMVLATDMSKHMNLLADLKTMVETKKVTSLGVLLLDNYS 426
>gi|149363646 phosphodiesterase 4C isoform PDE4C-3 [Homo sapiens]
Length = 680
Score = 29.3 bits (64), Expect = 3.3
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 20/166 (12%)
Query: 4 ASNLSDYFLLLEDHIHCTPKF-----AAAISSALSAWKELPWVILEFSHLSISGKVFCTS 58
A L+ Y L+LE H H + AA ++ + P + F+ L I +F ++
Sbjct: 335 ADTLATYLLMLEGHYHANVAYHNSLHAADVAQSTHVLLATPALEAVFTDLEILAALFASA 394
Query: 59 ----DFSRLNTFFL--------LFHKDT---PTHLLLSEFRLLLAQNIPIHFSPSVFHHT 103
D ++ FL L + D H L F+LL A+N I + S
Sbjct: 395 IHDVDHPGVSNQFLINTNSELALMYNDASVLENHHLAVGFKLLQAENCDIFQNLSAKQRL 454
Query: 104 GNYSVFDDMCFSVEKDRVFGEPDNPVATVLTDMVSMLAVILQYTYT 149
+ DM + + + + V T V+ L V+L Y+
Sbjct: 455 SLRRMVIDMVLATDMSKHMNLLADLKTMVETKKVTSLGVLLLDNYS 500
>gi|115529445 phosphodiesterase 4C isoform PDE4C-1 [Homo sapiens]
Length = 712
Score = 29.3 bits (64), Expect = 3.3
Identities = 38/166 (22%), Positives = 63/166 (37%), Gaps = 20/166 (12%)
Query: 4 ASNLSDYFLLLEDHIHCTPKF-----AAAISSALSAWKELPWVILEFSHLSISGKVFCTS 58
A L+ Y L+LE H H + AA ++ + P + F+ L I +F ++
Sbjct: 367 ADTLATYLLMLEGHYHANVAYHNSLHAADVAQSTHVLLATPALEAVFTDLEILAALFASA 426
Query: 59 ----DFSRLNTFFL--------LFHKDT---PTHLLLSEFRLLLAQNIPIHFSPSVFHHT 103
D ++ FL L + D H L F+LL A+N I + S
Sbjct: 427 IHDVDHPGVSNQFLINTNSELALMYNDASVLENHHLAVGFKLLQAENCDIFQNLSAKQRL 486
Query: 104 GNYSVFDDMCFSVEKDRVFGEPDNPVATVLTDMVSMLAVILQYTYT 149
+ DM + + + + V T V+ L V+L Y+
Sbjct: 487 SLRRMVIDMVLATDMSKHMNLLADLKTMVETKKVTSLGVLLLDNYS 532
>gi|110611156 laminin, gamma 3 precursor [Homo sapiens]
Length = 1575
Score = 28.5 bits (62), Expect = 5.6
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 25 AAAISSALSAWKELPWVILEFSHLSISGKVFCTSDFSRLNTFFLLFHKDTPTHLLLSEFR 84
AAAI ++L +E P ++SHL+ + S H+DT T + + +R
Sbjct: 1132 AAAILASLEIPQEGPSQPTKWSHLATEARALARS------------HRDTATKIAATAWR 1179
Query: 85 LLLAQN 90
LLA N
Sbjct: 1180 ALLASN 1185
>gi|28466983 leprecan-like 2 [Homo sapiens]
Length = 736
Score = 28.1 bits (61), Expect = 7.3
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 164 NYLTVILDRPQKNT-QIAVGRYRLQQGQVEPGYDPQED 200
N L+V+L P+ + A+ +Y+ Q G+ PG P+ED
Sbjct: 338 NVLSVLLFYPEDEAAKRALNQYQAQLGEPRPGLGPRED 375
>gi|186910317 solute carrier family 12, member 3 isoform 2 [Homo
sapiens]
Length = 1029
Score = 27.7 bits (60), Expect = 9.5
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 164 NYLTVILDRPQKNTQIAVGRYR-------LQQGQVEPGYDPQEDPKSCARYALLGPLVGG 216
+Y+ ++ D N + V R R + Q + P +DP ED K + P V G
Sbjct: 755 DYIGILHDAFDFNYGVCVMRMREGLNVSKMMQAHINPVFDPAEDGKEASARG-ARPSVSG 813
Query: 217 NLDQVVFSEEE 227
LD +EE
Sbjct: 814 ALDPKALVKEE 824
>gi|186910315 solute carrier family 12, member 3 isoform 1 [Homo
sapiens]
Length = 1030
Score = 27.7 bits (60), Expect = 9.5
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 164 NYLTVILDRPQKNTQIAVGRYR-------LQQGQVEPGYDPQEDPKSCARYALLGPLVGG 216
+Y+ ++ D N + V R R + Q + P +DP ED K + P V G
Sbjct: 756 DYIGILHDAFDFNYGVCVMRMREGLNVSKMMQAHINPVFDPAEDGKEASARG-ARPSVSG 814
Query: 217 NLDQVVFSEEE 227
LD +EE
Sbjct: 815 ALDPKALVKEE 825
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,454,313
Number of Sequences: 37866
Number of extensions: 414030
Number of successful extensions: 697
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 683
Number of HSP's gapped (non-prelim): 17
length of query: 245
length of database: 18,247,518
effective HSP length: 100
effective length of query: 145
effective length of database: 14,460,918
effective search space: 2096833110
effective search space used: 2096833110
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.