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Search of human proteins with 239747360
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747360 PREDICTED: hypothetical protein [Homo sapiens]
(160 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747360 PREDICTED: hypothetical protein [Homo sapiens] 344 2e-95
gi|239741185 PREDICTED: hypothetical protein XP_002342152 [Homo ... 344 2e-95
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ... 29 2.0
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ... 29 2.0
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ... 29 2.0
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap... 28 4.4
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens] 28 4.4
gi|169206177 PREDICTED: hypothetical protein [Homo sapiens] 27 5.7
gi|169206493 PREDICTED: hypothetical protein [Homo sapiens] 27 5.7
gi|169205947 PREDICTED: hypothetical protein [Homo sapiens] 27 5.7
gi|194328738 hypothetical protein LOC23247 [Homo sapiens] 27 5.7
gi|62241036 hypothetical protein LOC541565 [Homo sapiens] 27 5.7
gi|74275350 translocator protein isoform PBR [Homo sapiens] 27 7.5
gi|188497683 FAST kinase domains 1 [Homo sapiens] 27 7.5
gi|50345870 DENN/MADD domain containing 3 [Homo sapiens] 27 9.8
gi|27734865 unc-5 homolog C-like [Homo sapiens] 27 9.8
>gi|239747360 PREDICTED: hypothetical protein [Homo sapiens]
Length = 160
Score = 344 bits (883), Expect = 2e-95
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MPAISVSPSLQKYSKQQKLNTYEVNTKDLHRKISGSSVDAIAHCSAGQSSGLSFDFGPVL 60
MPAISVSPSLQKYSKQQKLNTYEVNTKDLHRKISGSSVDAIAHCSAGQSSGLSFDFGPVL
Sbjct: 1 MPAISVSPSLQKYSKQQKLNTYEVNTKDLHRKISGSSVDAIAHCSAGQSSGLSFDFGPVL 60
Query: 61 QNQQPFSQKTVECSQDHLWKVNYSIFNLLPWAMMSETQHGGRTSSCVGNLSEPPWRPPKW 120
QNQQPFSQKTVECSQDHLWKVNYSIFNLLPWAMMSETQHGGRTSSCVGNLSEPPWRPPKW
Sbjct: 61 QNQQPFSQKTVECSQDHLWKVNYSIFNLLPWAMMSETQHGGRTSSCVGNLSEPPWRPPKW 120
Query: 121 LWQSCRGGGNKKGDTWLSFLNQLTMGTHLYWNFRVRKYQN 160
LWQSCRGGGNKKGDTWLSFLNQLTMGTHLYWNFRVRKYQN
Sbjct: 121 LWQSCRGGGNKKGDTWLSFLNQLTMGTHLYWNFRVRKYQN 160
>gi|239741185 PREDICTED: hypothetical protein XP_002342152 [Homo
sapiens]
Length = 160
Score = 344 bits (883), Expect = 2e-95
Identities = 160/160 (100%), Positives = 160/160 (100%)
Query: 1 MPAISVSPSLQKYSKQQKLNTYEVNTKDLHRKISGSSVDAIAHCSAGQSSGLSFDFGPVL 60
MPAISVSPSLQKYSKQQKLNTYEVNTKDLHRKISGSSVDAIAHCSAGQSSGLSFDFGPVL
Sbjct: 1 MPAISVSPSLQKYSKQQKLNTYEVNTKDLHRKISGSSVDAIAHCSAGQSSGLSFDFGPVL 60
Query: 61 QNQQPFSQKTVECSQDHLWKVNYSIFNLLPWAMMSETQHGGRTSSCVGNLSEPPWRPPKW 120
QNQQPFSQKTVECSQDHLWKVNYSIFNLLPWAMMSETQHGGRTSSCVGNLSEPPWRPPKW
Sbjct: 61 QNQQPFSQKTVECSQDHLWKVNYSIFNLLPWAMMSETQHGGRTSSCVGNLSEPPWRPPKW 120
Query: 121 LWQSCRGGGNKKGDTWLSFLNQLTMGTHLYWNFRVRKYQN 160
LWQSCRGGGNKKGDTWLSFLNQLTMGTHLYWNFRVRKYQN
Sbjct: 121 LWQSCRGGGNKKGDTWLSFLNQLTMGTHLYWNFRVRKYQN 160
>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
[Homo sapiens]
Length = 2191
Score = 28.9 bits (63), Expect = 2.0
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 61 QNQQPFSQKTVECSQDHLWKVNYSIFNL-----LPWAMMSETQHGGRTSSCVGNLSEPPW 115
Q QQ Q+ + Q H N S+ P M + QHGG S G ++PP
Sbjct: 58 QQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPG 117
Query: 116 RP 117
P
Sbjct: 118 PP 119
>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
[Homo sapiens]
Length = 2231
Score = 28.9 bits (63), Expect = 2.0
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 61 QNQQPFSQKTVECSQDHLWKVNYSIFNL-----LPWAMMSETQHGGRTSSCVGNLSEPPW 115
Q QQ Q+ + Q H N S+ P M + QHGG S G ++PP
Sbjct: 58 QQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPG 117
Query: 116 RP 117
P
Sbjct: 118 PP 119
>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
[Homo sapiens]
Length = 2178
Score = 28.9 bits (63), Expect = 2.0
Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 61 QNQQPFSQKTVECSQDHLWKVNYSIFNL-----LPWAMMSETQHGGRTSSCVGNLSEPPW 115
Q QQ Q+ + Q H N S+ P M + QHGG S G ++PP
Sbjct: 58 QQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPG 117
Query: 116 RP 117
P
Sbjct: 118 PP 119
>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
sapiens]
Length = 1116
Score = 27.7 bits (60), Expect = 4.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 15 KQQKLNTYEVNTKDLHRKIS----------GSSVDAIAHCSAGQSSGLSFD 55
KQ++++ Y+ + KDL K+S S +D H S+ SSGL D
Sbjct: 643 KQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKD 693
>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
Length = 1088
Score = 27.7 bits (60), Expect = 4.4
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 15 KQQKLNTYEVNTKDLHRKIS----------GSSVDAIAHCSAGQSSGLSFD 55
KQ++++ Y+ + KDL K+S S +D H S+ SSGL D
Sbjct: 615 KQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKD 665
>gi|169206177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 27.3 bits (59), Expect = 5.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 93 MMSETQHGGRTSSCVGNLSEPPWRPP 118
++ E H R S +G L PP RPP
Sbjct: 162 LLQEQHHSQRWLSALGGLPPPPGRPP 187
>gi|169206493 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 27.3 bits (59), Expect = 5.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 93 MMSETQHGGRTSSCVGNLSEPPWRPP 118
++ E H R S +G L PP RPP
Sbjct: 162 LLQEQHHSQRWLSALGGLPPPPGRPP 187
>gi|169205947 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 27.3 bits (59), Expect = 5.7
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 93 MMSETQHGGRTSSCVGNLSEPPWRPP 118
++ E H R S +G L PP RPP
Sbjct: 162 LLQEQHHSQRWLSALGGLPPPPGRPP 187
>gi|194328738 hypothetical protein LOC23247 [Homo sapiens]
Length = 1618
Score = 27.3 bits (59), Expect = 5.7
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 110 LSEPPWRPPKWLWQSCRG-----GGNKKGDTWLS 138
+ EPP + P WL S G GG K WLS
Sbjct: 744 ICEPPGKTPSWLQPSPTGKDRKQGGRKPKPLWLS 777
>gi|62241036 hypothetical protein LOC541565 [Homo sapiens]
Length = 365
Score = 27.3 bits (59), Expect = 5.7
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 90 PWAMMSETQHGGRTSSCVGNLSEPPWRPPK 119
PW ++S+T+H G ++ + P PP+
Sbjct: 245 PWELLSQTEHTGAKAASPPKVEVPSANPPR 274
>gi|74275350 translocator protein isoform PBR [Homo sapiens]
Length = 169
Score = 26.9 bits (58), Expect = 7.5
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 10/42 (23%)
Query: 110 LSEPPWRPPKWLWQSCRGGGNKKGDTWLSFLNQLTMGTHLYW 151
L +P W PP W+ G W + + + G++L W
Sbjct: 37 LQKPSWHPPHWV----------LGPVWGTLYSAMGYGSYLVW 68
>gi|188497683 FAST kinase domains 1 [Homo sapiens]
Length = 847
Score = 26.9 bits (58), Expect = 7.5
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 56 FGPVLQNQQPFSQKTVECSQDHLWKVNYSIFNLL 89
FG + +N+ S+K V C+ D LWK+ +LL
Sbjct: 53 FGFIERNKAILSEKQVGCAFDMLWKLQKQKTSLL 86
>gi|50345870 DENN/MADD domain containing 3 [Homo sapiens]
Length = 1198
Score = 26.6 bits (57), Expect = 9.8
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 15/75 (20%)
Query: 42 AHCSAGQSSGLSFDFGPVLQNQQPFSQKTVECSQDHL---WKVNY----SIFNLLPWAMM 94
AHCS+ ++Q+ Q CS D + W V+ S F L +
Sbjct: 984 AHCSSVTDL--------IVQDGQEAPSNVYSCSMDGMVLVWNVSTLQVTSRFQLPRGGLT 1035
Query: 95 SETQHGGRTSSCVGN 109
S HGGR C GN
Sbjct: 1036 SIRLHGGRLWCCTGN 1050
>gi|27734865 unc-5 homolog C-like [Homo sapiens]
Length = 518
Score = 26.6 bits (57), Expect = 9.8
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 8/53 (15%)
Query: 58 PVLQNQQPFSQKTVECS-----QDHLWKVNYSIFNL---LPWAMMSETQHGGR 102
PV + + + Q V CS Q HL Y + N L WA+ +E HGGR
Sbjct: 238 PVGREARKWLQLAVFCSPLVPGQSHLQLRIYFLNNTPCALQWALTNEQPHGGR 290
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.130 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,061,487
Number of Sequences: 37866
Number of extensions: 313776
Number of successful extensions: 622
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 16
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.