Guide to the Human Genome
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Search of human proteins with 239747360

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239747360 PREDICTED: hypothetical protein [Homo sapiens]
         (160 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239747360 PREDICTED: hypothetical protein [Homo sapiens]           344   2e-95
gi|239741185 PREDICTED: hypothetical protein XP_002342152 [Homo ...   344   2e-95
gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2 ...    29   2.0  
gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1 ...    29   2.0  
gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3 ...    29   2.0  
gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo sap...    28   4.4  
gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]    28   4.4  
gi|169206177 PREDICTED: hypothetical protein [Homo sapiens]            27   5.7  
gi|169206493 PREDICTED: hypothetical protein [Homo sapiens]            27   5.7  
gi|169205947 PREDICTED: hypothetical protein [Homo sapiens]            27   5.7  
gi|194328738 hypothetical protein LOC23247 [Homo sapiens]              27   5.7  
gi|62241036 hypothetical protein LOC541565 [Homo sapiens]              27   5.7  
gi|74275350 translocator protein isoform PBR [Homo sapiens]            27   7.5  
gi|188497683 FAST kinase domains 1 [Homo sapiens]                      27   7.5  
gi|50345870 DENN/MADD domain containing 3 [Homo sapiens]               27   9.8  
gi|27734865 unc-5 homolog C-like [Homo sapiens]                        27   9.8  

>gi|239747360 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 160

 Score =  344 bits (883), Expect = 2e-95
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MPAISVSPSLQKYSKQQKLNTYEVNTKDLHRKISGSSVDAIAHCSAGQSSGLSFDFGPVL 60
           MPAISVSPSLQKYSKQQKLNTYEVNTKDLHRKISGSSVDAIAHCSAGQSSGLSFDFGPVL
Sbjct: 1   MPAISVSPSLQKYSKQQKLNTYEVNTKDLHRKISGSSVDAIAHCSAGQSSGLSFDFGPVL 60

Query: 61  QNQQPFSQKTVECSQDHLWKVNYSIFNLLPWAMMSETQHGGRTSSCVGNLSEPPWRPPKW 120
           QNQQPFSQKTVECSQDHLWKVNYSIFNLLPWAMMSETQHGGRTSSCVGNLSEPPWRPPKW
Sbjct: 61  QNQQPFSQKTVECSQDHLWKVNYSIFNLLPWAMMSETQHGGRTSSCVGNLSEPPWRPPKW 120

Query: 121 LWQSCRGGGNKKGDTWLSFLNQLTMGTHLYWNFRVRKYQN 160
           LWQSCRGGGNKKGDTWLSFLNQLTMGTHLYWNFRVRKYQN
Sbjct: 121 LWQSCRGGGNKKGDTWLSFLNQLTMGTHLYWNFRVRKYQN 160


>gi|239741185 PREDICTED: hypothetical protein XP_002342152 [Homo
           sapiens]
          Length = 160

 Score =  344 bits (883), Expect = 2e-95
 Identities = 160/160 (100%), Positives = 160/160 (100%)

Query: 1   MPAISVSPSLQKYSKQQKLNTYEVNTKDLHRKISGSSVDAIAHCSAGQSSGLSFDFGPVL 60
           MPAISVSPSLQKYSKQQKLNTYEVNTKDLHRKISGSSVDAIAHCSAGQSSGLSFDFGPVL
Sbjct: 1   MPAISVSPSLQKYSKQQKLNTYEVNTKDLHRKISGSSVDAIAHCSAGQSSGLSFDFGPVL 60

Query: 61  QNQQPFSQKTVECSQDHLWKVNYSIFNLLPWAMMSETQHGGRTSSCVGNLSEPPWRPPKW 120
           QNQQPFSQKTVECSQDHLWKVNYSIFNLLPWAMMSETQHGGRTSSCVGNLSEPPWRPPKW
Sbjct: 61  QNQQPFSQKTVECSQDHLWKVNYSIFNLLPWAMMSETQHGGRTSSCVGNLSEPPWRPPKW 120

Query: 121 LWQSCRGGGNKKGDTWLSFLNQLTMGTHLYWNFRVRKYQN 160
           LWQSCRGGGNKKGDTWLSFLNQLTMGTHLYWNFRVRKYQN
Sbjct: 121 LWQSCRGGGNKKGDTWLSFLNQLTMGTHLYWNFRVRKYQN 160


>gi|40068464 AT rich interactive domain 1B (SWI1-like) isoform 2
           [Homo sapiens]
          Length = 2191

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 61  QNQQPFSQKTVECSQDHLWKVNYSIFNL-----LPWAMMSETQHGGRTSSCVGNLSEPPW 115
           Q QQ   Q+  +  Q H    N S+         P   M + QHGG   S  G  ++PP 
Sbjct: 58  QQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPG 117

Query: 116 RP 117
            P
Sbjct: 118 PP 119


>gi|40068466 AT rich interactive domain 1B (SWI1-like) isoform 1
           [Homo sapiens]
          Length = 2231

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 61  QNQQPFSQKTVECSQDHLWKVNYSIFNL-----LPWAMMSETQHGGRTSSCVGNLSEPPW 115
           Q QQ   Q+  +  Q H    N S+         P   M + QHGG   S  G  ++PP 
Sbjct: 58  QQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPG 117

Query: 116 RP 117
            P
Sbjct: 118 PP 119


>gi|40068462 AT rich interactive domain 1B (SWI1-like) isoform 3
           [Homo sapiens]
          Length = 2178

 Score = 28.9 bits (63), Expect = 2.0
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 61  QNQQPFSQKTVECSQDHLWKVNYSIFNL-----LPWAMMSETQHGGRTSSCVGNLSEPPW 115
           Q QQ   Q+  +  Q H    N S+         P   M + QHGG   S  G  ++PP 
Sbjct: 58  QQQQQQQQQQQQQQQQHPISNNNSLGGAGGGAPQPGPDMEQPQHGGAKDSAAGGQADPPG 117

Query: 116 RP 117
            P
Sbjct: 118 PP 119


>gi|38045898 RAB6-interacting protein 2 isoform epsilon [Homo
           sapiens]
          Length = 1116

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 10/51 (19%)

Query: 15  KQQKLNTYEVNTKDLHRKIS----------GSSVDAIAHCSAGQSSGLSFD 55
           KQ++++ Y+ + KDL  K+S           S +D   H S+  SSGL  D
Sbjct: 643 KQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKD 693


>gi|38045896 RAB6-interacting protein 2 isoform delta [Homo sapiens]
          Length = 1088

 Score = 27.7 bits (60), Expect = 4.4
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 10/51 (19%)

Query: 15  KQQKLNTYEVNTKDLHRKIS----------GSSVDAIAHCSAGQSSGLSFD 55
           KQ++++ Y+ + KDL  K+S           S +D   H S+  SSGL  D
Sbjct: 615 KQEEIDNYKKDLKDLKEKVSLLQGDLSEKEASLLDLKEHASSLASSGLKKD 665


>gi|169206177 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 278

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 93  MMSETQHGGRTSSCVGNLSEPPWRPP 118
           ++ E  H  R  S +G L  PP RPP
Sbjct: 162 LLQEQHHSQRWLSALGGLPPPPGRPP 187


>gi|169206493 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 278

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 93  MMSETQHGGRTSSCVGNLSEPPWRPP 118
           ++ E  H  R  S +G L  PP RPP
Sbjct: 162 LLQEQHHSQRWLSALGGLPPPPGRPP 187


>gi|169205947 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 278

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 93  MMSETQHGGRTSSCVGNLSEPPWRPP 118
           ++ E  H  R  S +G L  PP RPP
Sbjct: 162 LLQEQHHSQRWLSALGGLPPPPGRPP 187


>gi|194328738 hypothetical protein LOC23247 [Homo sapiens]
          Length = 1618

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 5/34 (14%)

Query: 110 LSEPPWRPPKWLWQSCRG-----GGNKKGDTWLS 138
           + EPP + P WL  S  G     GG K    WLS
Sbjct: 744 ICEPPGKTPSWLQPSPTGKDRKQGGRKPKPLWLS 777


>gi|62241036 hypothetical protein LOC541565 [Homo sapiens]
          Length = 365

 Score = 27.3 bits (59), Expect = 5.7
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 90  PWAMMSETQHGGRTSSCVGNLSEPPWRPPK 119
           PW ++S+T+H G  ++    +  P   PP+
Sbjct: 245 PWELLSQTEHTGAKAASPPKVEVPSANPPR 274


>gi|74275350 translocator protein isoform PBR [Homo sapiens]
          Length = 169

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 10/42 (23%)

Query: 110 LSEPPWRPPKWLWQSCRGGGNKKGDTWLSFLNQLTMGTHLYW 151
           L +P W PP W+           G  W +  + +  G++L W
Sbjct: 37  LQKPSWHPPHWV----------LGPVWGTLYSAMGYGSYLVW 68


>gi|188497683 FAST kinase domains 1 [Homo sapiens]
          Length = 847

 Score = 26.9 bits (58), Expect = 7.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)

Query: 56 FGPVLQNQQPFSQKTVECSQDHLWKVNYSIFNLL 89
          FG + +N+   S+K V C+ D LWK+     +LL
Sbjct: 53 FGFIERNKAILSEKQVGCAFDMLWKLQKQKTSLL 86


>gi|50345870 DENN/MADD domain containing 3 [Homo sapiens]
          Length = 1198

 Score = 26.6 bits (57), Expect = 9.8
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 15/75 (20%)

Query: 42   AHCSAGQSSGLSFDFGPVLQNQQPFSQKTVECSQDHL---WKVNY----SIFNLLPWAMM 94
            AHCS+            ++Q+ Q        CS D +   W V+     S F L    + 
Sbjct: 984  AHCSSVTDL--------IVQDGQEAPSNVYSCSMDGMVLVWNVSTLQVTSRFQLPRGGLT 1035

Query: 95   SETQHGGRTSSCVGN 109
            S   HGGR   C GN
Sbjct: 1036 SIRLHGGRLWCCTGN 1050


>gi|27734865 unc-5 homolog C-like [Homo sapiens]
          Length = 518

 Score = 26.6 bits (57), Expect = 9.8
 Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 58  PVLQNQQPFSQKTVECS-----QDHLWKVNYSIFNL---LPWAMMSETQHGGR 102
           PV +  + + Q  V CS     Q HL    Y + N    L WA+ +E  HGGR
Sbjct: 238 PVGREARKWLQLAVFCSPLVPGQSHLQLRIYFLNNTPCALQWALTNEQPHGGR 290


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.130    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,061,487
Number of Sequences: 37866
Number of extensions: 313776
Number of successful extensions: 622
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 611
Number of HSP's gapped (non-prelim): 16
length of query: 160
length of database: 18,247,518
effective HSP length: 94
effective length of query: 66
effective length of database: 14,688,114
effective search space: 969415524
effective search space used: 969415524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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