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Search of human proteins with 239747346
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239747346 PREDICTED: hypothetical protein XP_002346427 [Homo
sapiens]
(268 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239747346 PREDICTED: hypothetical protein XP_002346427 [Homo ... 544 e-155
gi|239741171 PREDICTED: hypothetical protein XP_002342125 [Homo ... 544 e-155
gi|239752812 PREDICTED: hypothetical protein [Homo sapiens] 542 e-154
gi|23510413 sorting nexin 26 [Homo sapiens] 31 0.99
gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo ... 31 1.3
gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo ... 31 1.3
gi|21955174 kinesin family member C2 [Homo sapiens] 30 2.2
gi|168229214 C-type lectin domain family 2, member L [Homo sapiens] 30 2.2
gi|189181654 deleted in azoospermia [Homo sapiens] 30 2.9
gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens] 30 2.9
gi|32698734 deleted in azoospermia 4 isoform 2 [Homo sapiens] 30 2.9
gi|11036660 deleted in azoospermia 2 isoform 1 [Homo sapiens] 30 2.9
gi|54292110 deleted in azoospermia 3 [Homo sapiens] 30 2.9
gi|54292107 deleted in azoospermia 2 isoform 3 [Homo sapiens] 30 2.9
gi|54292105 deleted in azoospermia 2 isoform 2 [Homo sapiens] 30 2.9
gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo sap... 30 2.9
gi|239743164 PREDICTED: hypothetical protein [Homo sapiens] 29 4.9
gi|239508826 PREDICTED: hypothetical protein [Homo sapiens] 29 4.9
gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens] 28 6.4
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 28 6.4
gi|33359215 ALS2 C-terminal like isoform 1 [Homo sapiens] 28 6.4
gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo ... 28 8.4
gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo ... 28 8.4
gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo ... 28 8.4
gi|166235901 B-cell linker isoform 2 [Homo sapiens] 28 8.4
gi|7019535 B-cell linker isoform 1 [Homo sapiens] 28 8.4
>gi|239747346 PREDICTED: hypothetical protein XP_002346427 [Homo
sapiens]
Length = 268
Score = 544 bits (1401), Expect = e-155
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MRVDSTFPPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLADLVVHLGE 60
MRVDSTFPPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLADLVVHLGE
Sbjct: 1 MRVDSTFPPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLADLVVHLGE 60
Query: 61 GVLATQLLSQLVVQGAIKHLPELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQLEA 120
GVLATQLLSQLVVQGAIKHLPELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQLEA
Sbjct: 61 GVLATQLLSQLVVQGAIKHLPELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQLEA 120
Query: 121 TYYTLGHSPMHAADKLLQLPHAGPGFKVFHTRLPICSNVDGLLQALHGHQHVLHHVVLLV 180
TYYTLGHSPMHAADKLLQLPHAGPGFKVFHTRLPICSNVDGLLQALHGHQHVLHHVVLLV
Sbjct: 121 TYYTLGHSPMHAADKLLQLPHAGPGFKVFHTRLPICSNVDGLLQALHGHQHVLHHVVLLV 180
Query: 181 QLAQGLTLGQLQEGDLGRHHPAKEVAEDGVVAKGDNPHLELPEDAARVAVVVVSQGNVLQ 240
QLAQGLTLGQLQEGDLGRHHPAKEVAEDGVVAKGDNPHLELPEDAARVAVVVVSQGNVLQ
Sbjct: 181 QLAQGLTLGQLQEGDLGRHHPAKEVAEDGVVAKGDNPHLELPEDAARVAVVVVSQGNVLQ 240
Query: 241 ALSVCLQIVLHMLKEPRLVVIANAIQLK 268
ALSVCLQIVLHMLKEPRLVVIANAIQLK
Sbjct: 241 ALSVCLQIVLHMLKEPRLVVIANAIQLK 268
>gi|239741171 PREDICTED: hypothetical protein XP_002342125 [Homo
sapiens]
Length = 268
Score = 544 bits (1401), Expect = e-155
Identities = 268/268 (100%), Positives = 268/268 (100%)
Query: 1 MRVDSTFPPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLADLVVHLGE 60
MRVDSTFPPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLADLVVHLGE
Sbjct: 1 MRVDSTFPPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLADLVVHLGE 60
Query: 61 GVLATQLLSQLVVQGAIKHLPELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQLEA 120
GVLATQLLSQLVVQGAIKHLPELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQLEA
Sbjct: 61 GVLATQLLSQLVVQGAIKHLPELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQLEA 120
Query: 121 TYYTLGHSPMHAADKLLQLPHAGPGFKVFHTRLPICSNVDGLLQALHGHQHVLHHVVLLV 180
TYYTLGHSPMHAADKLLQLPHAGPGFKVFHTRLPICSNVDGLLQALHGHQHVLHHVVLLV
Sbjct: 121 TYYTLGHSPMHAADKLLQLPHAGPGFKVFHTRLPICSNVDGLLQALHGHQHVLHHVVLLV 180
Query: 181 QLAQGLTLGQLQEGDLGRHHPAKEVAEDGVVAKGDNPHLELPEDAARVAVVVVSQGNVLQ 240
QLAQGLTLGQLQEGDLGRHHPAKEVAEDGVVAKGDNPHLELPEDAARVAVVVVSQGNVLQ
Sbjct: 181 QLAQGLTLGQLQEGDLGRHHPAKEVAEDGVVAKGDNPHLELPEDAARVAVVVVSQGNVLQ 240
Query: 241 ALSVCLQIVLHMLKEPRLVVIANAIQLK 268
ALSVCLQIVLHMLKEPRLVVIANAIQLK
Sbjct: 241 ALSVCLQIVLHMLKEPRLVVIANAIQLK 268
>gi|239752812 PREDICTED: hypothetical protein [Homo sapiens]
Length = 268
Score = 542 bits (1396), Expect = e-154
Identities = 267/268 (99%), Positives = 268/268 (100%)
Query: 1 MRVDSTFPPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLADLVVHLGE 60
MRVDSTFPPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLADLVVHLGE
Sbjct: 1 MRVDSTFPPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLADLVVHLGE 60
Query: 61 GVLATQLLSQLVVQGAIKHLPELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQLEA 120
GVLATQLLSQLVVQGAIKHLPELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQLEA
Sbjct: 61 GVLATQLLSQLVVQGAIKHLPELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQLEA 120
Query: 121 TYYTLGHSPMHAADKLLQLPHAGPGFKVFHTRLPICSNVDGLLQALHGHQHVLHHVVLLV 180
TYYTLGHSPMHAADKLLQLPHAGPGFKVFHTRLPICSNVDGLLQALHGHQHVLHHVVLLV
Sbjct: 121 TYYTLGHSPMHAADKLLQLPHAGPGFKVFHTRLPICSNVDGLLQALHGHQHVLHHVVLLV 180
Query: 181 QLAQGLTLGQLQEGDLGRHHPAKEVAEDGVVAKGDNPHLELPEDAARVAVVVVSQGNVLQ 240
QLAQGLTLGQLQEGDLGRHHPAKEVAEDGVVAKGD+PHLELPEDAARVAVVVVSQGNVLQ
Sbjct: 181 QLAQGLTLGQLQEGDLGRHHPAKEVAEDGVVAKGDDPHLELPEDAARVAVVVVSQGNVLQ 240
Query: 241 ALSVCLQIVLHMLKEPRLVVIANAIQLK 268
ALSVCLQIVLHMLKEPRLVVIANAIQLK
Sbjct: 241 ALSVCLQIVLHMLKEPRLVVIANAIQLK 268
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 31.2 bits (69), Expect = 0.99
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 5 STFPPDAVHSPAPAAEQRGPTPTKTKWV---LGKMRPAGLAGSSSVP 48
S FPPD + AP R PTP + +V LG P+ + SSS P
Sbjct: 982 SCFPPDHLGYSAPQHPARRPTPPEPLYVNLALGPRGPSPASSSSSSP 1028
>gi|239757324 PREDICTED: hypothetical protein XP_002345241 [Homo
sapiens]
Length = 582
Score = 30.8 bits (68), Expect = 1.3
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 163 LQALHGHQHVLHHVVLLVQLAQGLTLG----QLQEGDLGRHHPAKEVAEDG 209
L+AL GH HV V V + +G T G Q QEGD G+ P++ +A DG
Sbjct: 335 LEALAGH-HVDDGVDAAVDVGKGDTQGVQLIQQQEGDPGQAGPSEVLAPDG 384
>gi|239751831 PREDICTED: hypothetical protein XP_002348009 [Homo
sapiens]
Length = 589
Score = 30.8 bits (68), Expect = 1.3
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 163 LQALHGHQHVLHHVVLLVQLAQGLTLG----QLQEGDLGRHHPAKEVAEDG 209
L+AL GH HV V V + +G T G Q QEGD G+ P++ +A DG
Sbjct: 342 LEALAGH-HVDDGVDAAVDVGKGDTQGVQLIQQQEGDPGQAGPSEVLAPDG 391
>gi|21955174 kinesin family member C2 [Homo sapiens]
Length = 838
Score = 30.0 bits (66), Expect = 2.2
Identities = 33/121 (27%), Positives = 42/121 (34%), Gaps = 25/121 (20%)
Query: 8 PPDAVHSPAPAAE-----------QRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLADLVV 56
PP PAP A Q P+ + T+WV G AGS + PG L
Sbjct: 720 PPTRARPPAPLARRSPRGRRISGRQSAPSSSPTEWVKWSWGQPGAAGSRAPPGRLLPSAP 779
Query: 57 HLGEGVLATQLLSQLVVQGAIKHLPELLPVHVAVGIQHLEAAEAEKWSWPHSPGA--VPW 114
L L L A+ H P +P + + A P SPG+ PW
Sbjct: 780 TLRSPGPPAPLRRPL----AVLHAP--VPTTARARLSRPQRA------CPSSPGSRPCPW 827
Query: 115 G 115
G
Sbjct: 828 G 828
>gi|168229214 C-type lectin domain family 2, member L [Homo
sapiens]
Length = 214
Score = 30.0 bits (66), Expect = 2.2
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 4/74 (5%)
Query: 8 PPDAVH-SPAPAAEQ-RGPTPTKTKWVLGKMRPAGLA--GSSSVPGGLADLVVHLGEGVL 63
PP A +PAPAA + R P + + G +R +G GS+S L D L G +
Sbjct: 15 PPLAARPAPAPAAPRPRSPAEAEARGPEGLLRRSGSGYEGSTSWKAALEDTTTRLLLGAI 74
Query: 64 ATQLLSQLVVQGAI 77
A L + LVV +
Sbjct: 75 AVLLFAILVVMSIL 88
>gi|189181654 deleted in azoospermia [Homo sapiens]
Length = 744
Score = 29.6 bits (65), Expect = 2.9
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 81 PELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQL 118
P++ P V QH++A A +PHSPG V GCQL
Sbjct: 484 PQITPNPVT---QHVQAYSA----YPHSPGQVITGCQL 514
>gi|54292113 deleted in azoospermia 4 isoform 1 [Homo sapiens]
Length = 579
Score = 29.6 bits (65), Expect = 2.9
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 81 PELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQL 118
P++ P V QH++A A +PHSPG V GCQL
Sbjct: 319 PQITPNPVT---QHVQAYSA----YPHSPGQVITGCQL 349
>gi|32698734 deleted in azoospermia 4 isoform 2 [Homo sapiens]
Length = 390
Score = 29.6 bits (65), Expect = 2.9
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 81 PELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQL 118
P++ P V QH++A A +PHSPG V GCQL
Sbjct: 154 PQITPNPVT---QHVQAYSA----YPHSPGQVITGCQL 184
>gi|11036660 deleted in azoospermia 2 isoform 1 [Homo sapiens]
Length = 558
Score = 29.6 bits (65), Expect = 2.9
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 81 PELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQL 118
P++ P V QH++A A +PHSPG V GCQL
Sbjct: 154 PQITPNPVT---QHVQAYSA----YPHSPGQVITGCQL 184
>gi|54292110 deleted in azoospermia 3 [Homo sapiens]
Length = 438
Score = 29.6 bits (65), Expect = 2.9
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 81 PELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQL 118
P++ P V QH++A A +PHSPG V GCQL
Sbjct: 154 PQITPNPVT---QHVQAYSA----YPHSPGQVITGCQL 184
>gi|54292107 deleted in azoospermia 2 isoform 3 [Homo sapiens]
Length = 366
Score = 29.6 bits (65), Expect = 2.9
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 81 PELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQL 118
P++ P V QH++A A +PHSPG V GCQL
Sbjct: 154 PQITPNPVT---QHVQAYSA----YPHSPGQVITGCQL 184
>gi|54292105 deleted in azoospermia 2 isoform 2 [Homo sapiens]
Length = 534
Score = 29.6 bits (65), Expect = 2.9
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 7/38 (18%)
Query: 81 PELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPWGCQL 118
P++ P V QH++A A +PHSPG V GCQL
Sbjct: 154 PQITPNPVT---QHVQAYSA----YPHSPGQVITGCQL 184
>gi|42475970 synapse defective 1, Rho GTPase, homolog 1 [Homo
sapiens]
Length = 735
Score = 29.6 bits (65), Expect = 2.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 9 PDAVHSPAPAAEQRGPTPTKTKWVLGKMRPA 39
P+A SPA A + P+ +WVLG +PA
Sbjct: 61 PEASRSPARGAYLQSLEPSSRRWVLGGAKPA 91
>gi|239743164 PREDICTED: hypothetical protein [Homo sapiens]
Length = 222
Score = 28.9 bits (63), Expect = 4.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 96 EAAEAEKWSWPHSPGAVPWGCQLEAT 121
EAAE++KW PG + W EAT
Sbjct: 74 EAAESQKWGLGRPPGGMNWAGPKEAT 99
>gi|239508826 PREDICTED: hypothetical protein [Homo sapiens]
Length = 222
Score = 28.9 bits (63), Expect = 4.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 96 EAAEAEKWSWPHSPGAVPWGCQLEAT 121
EAAE++KW PG + W EAT
Sbjct: 74 EAAESQKWGLGRPPGGMNWAGPKEAT 99
>gi|222144249 dynein heavy chain domain 1 isoform 1 [Homo sapiens]
Length = 4753
Score = 28.5 bits (62), Expect = 6.4
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 10/66 (15%)
Query: 55 VVHLGEGVLATQLLSQLVVQGAIKHLPELLPVHVAVGIQHLEAAEAEKWSWPHSPGAVPW 114
+VH+ +G +A +L + A+K LP+ +++ + +QH W A PW
Sbjct: 1459 LVHMLQGCVAARLARGPSLGEALKQLPKQNKLYLQLYVQH----------WIDLVQAFPW 1508
Query: 115 GCQLEA 120
C L A
Sbjct: 1509 QCVLVA 1514
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 28.5 bits (62), Expect = 6.4
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 11 AVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLADLV 55
A +P P E GP V+G P G G PG LA L+
Sbjct: 60 AATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPGLLAPLL 104
>gi|33359215 ALS2 C-terminal like isoform 1 [Homo sapiens]
Length = 953
Score = 28.5 bits (62), Expect = 6.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 6/47 (12%)
Query: 169 HQHVLHHVVLLVQLAQGLTLGQLQEGDLGRHHPAKEVAEDGVVAKGD 215
HQ + HHV V L L+LG +G HHP +E+ + V G+
Sbjct: 155 HQPLAHHVQQYVLLL--LSLGDT----IGEHHPTRELVVNAVTLFGN 195
>gi|169206080 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 28.1 bits (61), Expect = 8.4
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 8 PPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLA 52
PP SPAP A + G P RP G AG S P A
Sbjct: 91 PPRPTRSPAPLARRPGKPP---------RRPKGAAGHPSAPPAAA 126
>gi|169206459 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 28.1 bits (61), Expect = 8.4
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 8 PPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLA 52
PP SPAP A + G P RP G AG S P A
Sbjct: 91 PPRPTRSPAPLARRPGKPP---------RRPKGAAGHPSAPPAAA 126
>gi|169205915 PREDICTED: hypothetical protein LOC100132234 [Homo
sapiens]
Length = 202
Score = 28.1 bits (61), Expect = 8.4
Identities = 17/45 (37%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 8 PPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVPGGLA 52
PP SPAP A + G P RP G AG S P A
Sbjct: 91 PPRPTRSPAPLARRPGKPP---------RRPKGAAGHPSAPPAAA 126
>gi|166235901 B-cell linker isoform 2 [Homo sapiens]
Length = 433
Score = 28.1 bits (61), Expect = 8.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 8 PPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVP 48
PP A SP P A ++ TP KT V + + + +P
Sbjct: 214 PPPAAPSPLPRAGKKPTTPLKTTPVASQQNASSVCEEKPIP 254
>gi|7019535 B-cell linker isoform 1 [Homo sapiens]
Length = 456
Score = 28.1 bits (61), Expect = 8.4
Identities = 13/41 (31%), Positives = 19/41 (46%)
Query: 8 PPDAVHSPAPAAEQRGPTPTKTKWVLGKMRPAGLAGSSSVP 48
PP A SP P A ++ TP KT V + + + +P
Sbjct: 237 PPPAAPSPLPRAGKKPTTPLKTTPVASQQNASSVCEEKPIP 277
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,459,264
Number of Sequences: 37866
Number of extensions: 556597
Number of successful extensions: 1873
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1858
Number of HSP's gapped (non-prelim): 27
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.