Guide to the Human Genome
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Name: LOC100293139 Sequence: fasta or formatted (268aa) NCBI GI: 239752812
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.8         29           2
 C cysteine            1.1          3           1
 D aspartate           3.7         10           2
 E glutamate           4.9         13           1
 F phenylalanine       1.1          3           1
 G glycine             9.0         24           2
 H histidine           7.1         19           2
 I isoleucine          2.2          6           1
 K lysine              4.1         11           1
 L leucine            14.6         39           2
 M methionine          1.5          4           1
 N asparagine          1.1          3           1
 P proline             7.8         21           2
 Q glutamine           6.3         17           1
 R arginine            2.6          7           1
 S serine              4.5         12           3
 T threonine           3.4          9           1
 V valine             11.9         32           4
 W tryptophan          1.5          4           1
 Y tyrosine            0.7          2           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291300          0.996   PREDICTED: hypothetical protein XP_002346427 
LOC100288209          0.996   PREDICTED: hypothetical protein XP_002342125 
SNX26                 0.012   sorting nexin 26 
LOC100291688          0.012   PREDICTED: hypothetical protein XP_002345241 
LOC100290054          0.012   PREDICTED: hypothetical protein XP_002348009 
KIFC2                 0.010   kinesin family member C2 
CLEC2L                0.010   C-type lectin domain family 2, member L 
DAZ1                  0.010   deleted in azoospermia 
DAZ4                  0.010   deleted in azoospermia 4 isoform 1 
DAZ4                  0.010   deleted in azoospermia 4 isoform 2 
DAZ2                  0.010   deleted in azoospermia 2 isoform 1 
DAZ3                  0.010   deleted in azoospermia 3 
DAZ2                  0.010   deleted in azoospermia 2 isoform 3 
DAZ2                  0.010   deleted in azoospermia 2 isoform 2 
SYDE1                 0.010   synapse defective 1, Rho GTPase, homolog 1 
LOC730275             0.008   PREDICTED: hypothetical protein 
LOC730275             0.008   PREDICTED: hypothetical protein 
DNHD1                 0.006   dynein heavy chain domain 1 isoform 1 
DBP                   0.006   D site of albumin promoter (albumin D-box) binding p...
ALS2CL                0.006   ALS2 C-terminal like isoform 1 
LOC100132234          0.006   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.006   PREDICTED: hypothetical protein LOC100132234 
LOC100132234          0.006   PREDICTED: hypothetical protein LOC100132234 
BLNK                  0.006   B-cell linker isoform 2 
BLNK                  0.006   B-cell linker isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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