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Search of human proteins with 239746943
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746943 PREDICTED: hypothetical protein XP_002343887 [Homo
sapiens]
(99 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239746943 PREDICTED: hypothetical protein XP_002343887 [Homo ... 213 3e-56
gi|239752425 PREDICTED: hypothetical protein XP_002348263 [Homo ... 209 3e-55
gi|239757914 PREDICTED: similar to hCG1818060 [Homo sapiens] 208 8e-55
gi|83367077 mucin 16 [Homo sapiens] 29 0.70
gi|4506267 parathyroid hormone preproprotein [Homo sapiens] 28 2.0
gi|205277447 dual specificity phosphatase 11 [Homo sapiens] 28 2.0
gi|49355778 inter-alpha trypsin inhibitor heavy chain precursor ... 27 2.7
gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor... 27 2.7
gi|153945711 inter-alpha trypsin inhibitor heavy chain precursor... 27 2.7
gi|7706741 vestigial like 1 [Homo sapiens] 27 3.5
gi|117938768 GNAS complex locus alex [Homo sapiens] 26 6.0
gi|226958625 hypothetical protein LOC414236 [Homo sapiens] 26 6.0
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 26 7.8
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 26 7.8
gi|239743313 PREDICTED: hypothetical protein XP_002342790 [Homo ... 26 7.8
gi|239743305 PREDICTED: hypothetical protein XP_002342789 [Homo ... 26 7.8
gi|239743129 PREDICTED: hypothetical protein XP_002342758 [Homo ... 26 7.8
gi|169170602 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8
gi|239508988 PREDICTED: similar to HSPC047 protein [Homo sapiens] 26 7.8
gi|239508786 PREDICTED: similar to HSPC047 protein [Homo sapiens] 26 7.8
gi|46048439 N-acetyltransferase 6 [Homo sapiens] 26 7.8
gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens] 26 7.8
>gi|239746943 PREDICTED: hypothetical protein XP_002343887 [Homo
sapiens]
Length = 99
Score = 213 bits (541), Expect = 3e-56
Identities = 99/99 (100%), Positives = 99/99 (100%)
Query: 1 MAQGHSEVGPSTSAWSIRRKVDEYLRPSLASKSVLSVLLSRQLGNHRNDADLTEWLWTLK 60
MAQGHSEVGPSTSAWSIRRKVDEYLRPSLASKSVLSVLLSRQLGNHRNDADLTEWLWTLK
Sbjct: 1 MAQGHSEVGPSTSAWSIRRKVDEYLRPSLASKSVLSVLLSRQLGNHRNDADLTEWLWTLK 60
Query: 61 QAIPGWTWPLPTRHTINPPLPPGEDGKSKKMVWINKSFP 99
QAIPGWTWPLPTRHTINPPLPPGEDGKSKKMVWINKSFP
Sbjct: 61 QAIPGWTWPLPTRHTINPPLPPGEDGKSKKMVWINKSFP 99
>gi|239752425 PREDICTED: hypothetical protein XP_002348263 [Homo
sapiens]
Length = 99
Score = 209 bits (533), Expect = 3e-55
Identities = 98/99 (98%), Positives = 98/99 (98%)
Query: 1 MAQGHSEVGPSTSAWSIRRKVDEYLRPSLASKSVLSVLLSRQLGNHRNDADLTEWLWTLK 60
MAQGHSEVGPSTSAWSIRRKVDEYLRPSLASKSVLSVLLSRQLGNHRNDADLTEWLWTLK
Sbjct: 1 MAQGHSEVGPSTSAWSIRRKVDEYLRPSLASKSVLSVLLSRQLGNHRNDADLTEWLWTLK 60
Query: 61 QAIPGWTWPLPTRHTINPPLPPGEDGKSKKMVWINKSFP 99
QAIPGWTWPLPTRHTINPPLPPGED KSKKMVWINKSFP
Sbjct: 61 QAIPGWTWPLPTRHTINPPLPPGEDRKSKKMVWINKSFP 99
>gi|239757914 PREDICTED: similar to hCG1818060 [Homo sapiens]
Length = 99
Score = 208 bits (529), Expect = 8e-55
Identities = 97/99 (97%), Positives = 97/99 (97%)
Query: 1 MAQGHSEVGPSTSAWSIRRKVDEYLRPSLASKSVLSVLLSRQLGNHRNDADLTEWLWTLK 60
MAQGHSEVGPSTSAWSIRRKVDEYLRPSLASKSVLSVLLSRQLGNHRND DLTEWLWTLK
Sbjct: 1 MAQGHSEVGPSTSAWSIRRKVDEYLRPSLASKSVLSVLLSRQLGNHRNDVDLTEWLWTLK 60
Query: 61 QAIPGWTWPLPTRHTINPPLPPGEDGKSKKMVWINKSFP 99
QAIPGWTWPLPTRHTINPPLPPGED KSKKMVWINKSFP
Sbjct: 61 QAIPGWTWPLPTRHTINPPLPPGEDRKSKKMVWINKSFP 99
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 29.3 bits (64), Expect = 0.70
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 52 LTEWLWTLKQAIPGWTWPLPTRHTINPPLPPGEDGKS 88
+T WLW L ++P TWP +++ L G G S
Sbjct: 2048 ITSWLWDLTTSLPTTTWP---STSLSEALSSGHSGVS 2081
>gi|4506267 parathyroid hormone preproprotein [Homo sapiens]
Length = 115
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 28 SLASKSVLSVLLSRQLGNHRNDADLTEWLWTLKQAIPGWTWPLPTRHTINPPLPPGEDGK 87
S+ +SV + L LG H N + EWL Q + + + PL P + G
Sbjct: 27 SVKKRSVSEIQLMHNLGKHLNSMERVEWLRKKLQDVHNFV-------ALGAPLAPRDAGS 79
Query: 88 SK 89
+
Sbjct: 80 QR 81
>gi|205277447 dual specificity phosphatase 11 [Homo sapiens]
Length = 377
Score = 27.7 bits (60), Expect = 2.0
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 73 RHTINPPLPPGEDGKSKKMVW 93
RH + PP PPGED ++ W
Sbjct: 323 RHHLPPPGPPGEDYSHRRYSW 343
>gi|49355778 inter-alpha trypsin inhibitor heavy chain precursor 5
isoform 3 [Homo sapiens]
Length = 702
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 5 HSEVGPSTSAWSIRRKVDEYLRPSLASKSVLSVLLSRQLGNHRNDADLTEWLW---TLKQ 61
H EV S S I K D +RP A K V R G+ D + E LW T K+
Sbjct: 527 HVEVTASNSKKFIILKTDVPVRPQKAGKDVTG--SPRPGGDGEGDTNHIERLWSYLTTKE 584
Query: 62 AIPGW 66
+ W
Sbjct: 585 LLSSW 589
>gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor 5
isoform 1 [Homo sapiens]
Length = 956
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 5 HSEVGPSTSAWSIRRKVDEYLRPSLASKSVLSVLLSRQLGNHRNDADLTEWLW---TLKQ 61
H EV S S I K D +RP A K V R G+ D + E LW T K+
Sbjct: 527 HVEVTASNSKKFIILKTDVPVRPQKAGKDVTG--SPRPGGDGEGDTNHIERLWSYLTTKE 584
Query: 62 AIPGW 66
+ W
Sbjct: 585 LLSSW 589
>gi|153945711 inter-alpha trypsin inhibitor heavy chain precursor 5
isoform 2 [Homo sapiens]
Length = 742
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 5 HSEVGPSTSAWSIRRKVDEYLRPSLASKSVLSVLLSRQLGNHRNDADLTEWLW---TLKQ 61
H EV S S I K D +RP A K V R G+ D + E LW T K+
Sbjct: 313 HVEVTASNSKKFIILKTDVPVRPQKAGKDVTG--SPRPGGDGEGDTNHIERLWSYLTTKE 370
Query: 62 AIPGW 66
+ W
Sbjct: 371 LLSSW 375
>gi|7706741 vestigial like 1 [Homo sapiens]
Length = 258
Score = 26.9 bits (58), Expect = 3.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 64 PGWTWPLPTRHTINPPLPPGE 84
PG++ P P RH + P P G+
Sbjct: 144 PGYSHPFPARHLVPEPQPDGK 164
>gi|117938768 GNAS complex locus alex [Homo sapiens]
Length = 626
Score = 26.2 bits (56), Expect = 6.0
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 52 LTEWLWTLKQAIPGWTWPLPTRHTINPPL 80
L++ L T + A PGW P P PPL
Sbjct: 226 LSDLLLTSRAAAPGWRSPDPRSRLAAPPL 254
>gi|226958625 hypothetical protein LOC414236 [Homo sapiens]
Length = 151
Score = 26.2 bits (56), Expect = 6.0
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 17/95 (17%)
Query: 9 GPSTSAWSIRRKVDEYLRPSLASKSVLSVLLSR-QLGNH-----RNDADLTEWLWTLKQA 62
GP K+ +P+L S S L++ +S Q+ +H RN +++ +
Sbjct: 45 GPMLQGLQGEGKLAPIPKPTLPSPSRLTLFVSSSQMEDHGFPARRNGLTQASFIYQMPAG 104
Query: 63 --IPGWTW----PLPTRHTINPPLPP-----GEDG 86
PG + P+PT + PPLPP GE G
Sbjct: 105 WGSPGGLFLPCQPVPTPVVLKPPLPPCPISWGESG 139
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 64 PGWTWPLPTRHTINPPLPPGEDGKSKK 90
PG + P+ R PP PG+DG++ K
Sbjct: 233 PGVSGPMGPRGPPGPPGKPGDDGEAGK 259
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 64 PGWTWPLPTRHTINPPLPPGEDGKSKK 90
PG + P+ R PP PG+DG++ K
Sbjct: 164 PGVSGPMGPRGPPGPPGKPGDDGEAGK 190
>gi|239743313 PREDICTED: hypothetical protein XP_002342790 [Homo
sapiens]
Length = 172
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 66 WTWPLPTRHTINPPLPPG 83
+TWP PTR + N L PG
Sbjct: 62 YTWPGPTRDSPNASLQPG 79
>gi|239743305 PREDICTED: hypothetical protein XP_002342789 [Homo
sapiens]
Length = 172
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 66 WTWPLPTRHTINPPLPPG 83
+TWP PTR + N L PG
Sbjct: 62 YTWPGPTRDSPNASLQPG 79
>gi|239743129 PREDICTED: hypothetical protein XP_002342758 [Homo
sapiens]
Length = 182
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 66 WTWPLPTRHTINPPLPPG 83
+TWP PTR + N L PG
Sbjct: 72 YTWPGPTRDSPNASLQPG 89
>gi|169170602 PREDICTED: hypothetical protein [Homo sapiens]
Length = 172
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 66 WTWPLPTRHTINPPLPPG 83
+TWP PTR + N L PG
Sbjct: 62 YTWPGPTRDSPNASLQPG 79
>gi|239508988 PREDICTED: similar to HSPC047 protein [Homo sapiens]
Length = 172
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 66 WTWPLPTRHTINPPLPPG 83
+TWP PTR + N L PG
Sbjct: 62 YTWPGPTRDSPNASLQPG 79
>gi|239508786 PREDICTED: similar to HSPC047 protein [Homo sapiens]
Length = 182
Score = 25.8 bits (55), Expect = 7.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 66 WTWPLPTRHTINPPLPPG 83
+TWP PTR + N L PG
Sbjct: 72 YTWPGPTRDSPNASLQPG 89
>gi|46048439 N-acetyltransferase 6 [Homo sapiens]
Length = 308
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 69 PLPTRHTINPPLPPGEDGKS 88
PLP TI+PP+P G KS
Sbjct: 268 PLPECLTISPPVPSGPPSKS 287
>gi|32698936 B-cell CLL/lymphoma 9-like [Homo sapiens]
Length = 1499
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/25 (56%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 65 GWTWP-LPTRHTINPPLPPGEDGKS 88
G T P PT T N PLPPG D S
Sbjct: 349 GGTHPNTPTATTANNPLPPGGDPSS 373
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,626,396
Number of Sequences: 37866
Number of extensions: 189001
Number of successful extensions: 455
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 435
Number of HSP's gapped (non-prelim): 25
length of query: 99
length of database: 18,247,518
effective HSP length: 70
effective length of query: 29
effective length of database: 15,596,898
effective search space: 452310042
effective search space used: 452310042
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.