Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100291149 Sequence: fasta or formatted (99aa) NCBI GI: 239752425
Description:

PREDICTED: hypothetical protein XP_002348263

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1          5           1
 C cysteine            0.0          0           0
 D aspartate           4.0          4           1
 E glutamate           4.0          4           1
 F phenylalanine       1.0          1           1
 G glycine             5.1          5           1
 H histidine           3.0          3           1
 I isoleucine          4.0          4           1
 K lysine              7.1          7           2
 L leucine            11.1         11           2
 M methionine          2.0          2           1
 N asparagine          4.0          4           1
 P proline            10.1         10           2
 Q glutamine           3.0          3           1
 R arginine            7.1          7           2
 S serine             11.1         11           1
 T threonine           6.1          6           1
 V valine              5.1          5           1
 W tryptophan          6.1          6           1
 Y tyrosine            1.0          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348263 
LOC100293120          0.995   PREDICTED: similar to hCG1818060 
LOC100287728          0.984   PREDICTED: hypothetical protein XP_002343887 
MUC16                 0.021   mucin 16 
DUSP11                0.016   dual specificity phosphatase 11 
PTH                   0.011   parathyroid hormone preproprotein 
ITIH5                 0.011   inter-alpha trypsin inhibitor heavy chain precursor ...
ITIH5                 0.011   inter-alpha trypsin inhibitor heavy chain precursor...
ITIH5                 0.011   inter-alpha trypsin inhibitor heavy chain precursor...
VGLL1                 0.011   vestigial like 1 
GNAS                  0.005   GNAS complex locus alex 
ZHX2                  0.005   zinc fingers and homeoboxes 2 
LTBP2                 0.005   latent transforming growth factor beta binding protei...
LOC100286974          0.005   PREDICTED: hypothetical protein XP_002342790 
LOC100286937          0.005   PREDICTED: hypothetical protein XP_002342789 
LOC100287164          0.005   PREDICTED: hypothetical protein XP_002342758 
LOC100134584          0.005   PREDICTED: hypothetical protein 
LOC100286937          0.005   PREDICTED: similar to HSPC047 protein 
LOC100287164          0.005   PREDICTED: similar to HSPC047 protein 
C10orf55              0.005   hypothetical protein LOC414236 
BCL9L                 0.005   B-cell CLL/lymphoma 9-like 
ZBTB45                0.005   zinc finger and BTB domain containing 45 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press