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Search of human proteins with 239746810
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746810 PREDICTED: hypothetical protein [Homo sapiens]
(55 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757780 PREDICTED: hypothetical protein [Homo sapiens] 123 4e-29
gi|239746810 PREDICTED: hypothetical protein [Homo sapiens] 123 4e-29
gi|239752299 PREDICTED: hypothetical protein [Homo sapiens] 120 2e-28
gi|21703710 scotin [Homo sapiens] 103 3e-23
gi|148762978 similar to CG15216-PA [Homo sapiens] 37 0.004
gi|55741677 SET domain containing 1A [Homo sapiens] 34 0.022
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 34 0.028
gi|48255900 SWI/SNF-related matrix-associated actin-dependent re... 33 0.048
gi|48255898 SWI/SNF-related matrix-associated actin-dependent re... 33 0.048
gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens] 33 0.048
gi|5454140 tumor susceptibility gene 101 [Homo sapiens] 32 0.11
gi|10092601 eukaryotic translation initiation factor 4 gamma, 3 ... 32 0.11
gi|4557317 annexin A11 [Homo sapiens] 32 0.14
gi|22165433 annexin A11 [Homo sapiens] 32 0.14
gi|22165431 annexin A11 [Homo sapiens] 32 0.14
gi|211904149 DAZ associated protein 2 isoform f [Homo sapiens] 32 0.14
gi|211904145 DAZ associated protein 2 isoform e [Homo sapiens] 32 0.14
gi|211904142 DAZ associated protein 2 isoform d [Homo sapiens] 32 0.14
gi|211904140 DAZ associated protein 2 isoform c [Homo sapiens] 32 0.14
gi|211904135 DAZ associated protein 2 isoform b [Homo sapiens] 32 0.14
gi|7661886 DAZ associated protein 2 isoform a [Homo sapiens] 32 0.14
gi|171543895 ataxin 2 [Homo sapiens] 31 0.18
gi|60460889 Myb protein P42POP [Homo sapiens] 31 0.18
gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 ... 31 0.18
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 31 0.18
gi|14165278 hypothetical protein LOC84418 [Homo sapiens] 31 0.18
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 31 0.18
gi|12751477 forkhead box L2 [Homo sapiens] 31 0.24
gi|33946327 nucleoporin 214kDa [Homo sapiens] 31 0.24
gi|31543543 retinoic acid induced 17 [Homo sapiens] 31 0.24
>gi|239757780 PREDICTED: hypothetical protein [Homo sapiens]
Length = 55
Score = 123 bits (308), Expect = 4e-29
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MPAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 55
MPAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP
Sbjct: 1 MPAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 55
>gi|239746810 PREDICTED: hypothetical protein [Homo sapiens]
Length = 55
Score = 123 bits (308), Expect = 4e-29
Identities = 55/55 (100%), Positives = 55/55 (100%)
Query: 1 MPAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 55
MPAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP
Sbjct: 1 MPAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 55
>gi|239752299 PREDICTED: hypothetical protein [Homo sapiens]
Length = 61
Score = 120 bits (302), Expect = 2e-28
Identities = 54/55 (98%), Positives = 54/55 (98%)
Query: 1 MPAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 55
MPAASYPVQYPSPYPAQP GPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP
Sbjct: 7 MPAASYPVQYPSPYPAQPXGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 61
>gi|21703710 scotin [Homo sapiens]
Length = 240
Score = 103 bits (257), Expect = 3e-23
Identities = 46/54 (85%), Positives = 47/54 (87%)
Query: 1 MPAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAA 54
MPAA YP+QYP PYPAQPMGPPAY ETLAGGAA PYP SQPP NP YMDAPKAA
Sbjct: 186 MPAAPYPMQYPPPYPAQPMGPPAYHETLAGGAAAPYPASQPPYNPAYMDAPKAA 239
>gi|148762978 similar to CG15216-PA [Homo sapiens]
Length = 976
Score = 36.6 bits (83), Expect = 0.004
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 2 PAASYPVQYPSPYPAQPM-GP-PAYFETLAGGAATPYPTSQPPSNPDYMDAPKA 53
P ++ YP PYP++ + GP P G +P +PPS Y +AP+A
Sbjct: 298 PGPTFDAYYPRPYPSEELSGPSPRRMGGYYAGEVRTFPIQEPPSRSYYGEAPRA 351
>gi|55741677 SET domain containing 1A [Homo sapiens]
Length = 1707
Score = 34.3 bits (77), Expect = 0.022
Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 8/58 (13%)
Query: 2 PAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQP----PSNPDYMDAPKAAP 55
P A P Q P P P P PP Y +L G YP QP P PD P+ P
Sbjct: 595 PPAPTPPQQPPPPPPPPPPPPPYLASLPLG----YPPHQPAYLLPPRPDGPPPPEYPP 648
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 33.9 bits (76), Expect = 0.028
Identities = 22/56 (39%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 2 PAASYPVQYPSPY--PAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 55
P +S P+ PSP A+P+ PP AATP P + PPS P P A P
Sbjct: 298 PLSSSPLATPSPSGTKARPVPPP-------DNAATPLPATLPPSPPLATPLPLAPP 346
Score = 29.3 bits (64), Expect = 0.69
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 2 PAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 55
P+A+ P Q P P A P+ P P P + PP +P P+ P
Sbjct: 718 PSATPPPQAPPPLAAPPLQVP------------PSPPASPPMSPSATPPPRVPP 759
Score = 26.9 bits (58), Expect = 3.4
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 8/62 (12%)
Query: 2 PAASYPVQYPSPYPAQ-PMGPPAYFETLAGGA-------ATPYPTSQPPSNPDYMDAPKA 53
P S PVQ P PA P+ P A + A + P P + PP +P P+A
Sbjct: 667 PPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQA 726
Query: 54 AP 55
P
Sbjct: 727 PP 728
Score = 26.2 bits (56), Expect = 5.9
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 5 SYPVQYPSPY-PAQPMGPPAYFETLAGGAATPYPTSQPPS 43
S P+ P P P P PP+ +TL ATP P+ PPS
Sbjct: 334 SPPLATPLPLAPPSPSAPPS-LQTLPSPPATP-PSQAPPS 371
>gi|48255900 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform a [Homo sapiens]
Length = 1590
Score = 33.1 bits (74), Expect = 0.048
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 2 PAASYPVQYPSPYPAQPMGPPAYFET-LAGGAATP--YPTSQP----PSNPDYMDAPKAA 54
P + Y SP+P+ P+G P + + ++GG TP P SQP P +P M P
Sbjct: 112 PMDQHSQGYMSPHPS-PLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRG 170
Query: 55 P 55
P
Sbjct: 171 P 171
>gi|48255898 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a2 isoform b [Homo sapiens]
Length = 1572
Score = 33.1 bits (74), Expect = 0.048
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 2 PAASYPVQYPSPYPAQPMGPPAYFET-LAGGAATP--YPTSQP----PSNPDYMDAPKAA 54
P + Y SP+P+ P+G P + + ++GG TP P SQP P +P M P
Sbjct: 112 PMDQHSQGYMSPHPS-PLGAPEHVSSPMSGGGPTPPQMPPSQPGALIPGDPQAMSQPNRG 170
Query: 55 P 55
P
Sbjct: 171 P 171
>gi|33286442 BCL6 co-repressor-like 1 [Homo sapiens]
Length = 1711
Score = 33.1 bits (74), Expect = 0.048
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 2 PAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 55
PAA P P P P GPP+ + A TP P P P + AP P
Sbjct: 347 PAAPAPPSVPMPTPTPSSGPPSTPTLIPAFAPTPVPAPTPA--PIFTPAPTPMP 398
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 1 MPAASYPVQ-YPSPYPAQPMGPPAYFET----LAGGAATPYPTSQPPSNPDYMDAPKAAP 55
+PA S P+ P+ PA P P ++ ++ P P S PPS P + AP AP
Sbjct: 245 VPAPSPPLAPVPALAPAPPSVPTLISDSNPLSVSASVLVPVPASAPPSGPVPLSAPAPAP 304
>gi|5454140 tumor susceptibility gene 101 [Homo sapiens]
Length = 390
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 2 PAASYPVQYPSPYPAQPMGPP--AYFETLAGGAATPYPTSQPPSNPDYMDAP 51
P S P+ P P Q GPP +Y + GG + PYP+ PP+ Y P
Sbjct: 140 PVFSRPISASYP-PYQATGPPNTSYMPGMPGGIS-PYPSGYPPNPSGYPGCP 189
>gi|10092601 eukaryotic translation initiation factor 4 gamma, 3
[Homo sapiens]
Length = 1585
Score = 32.0 bits (71), Expect = 0.11
Identities = 21/54 (38%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 2 PAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 55
P YPVQ P P P P P F G TP+ PS P Y AP P
Sbjct: 81 PPQQYPVQPPGPGPFYPGPGPGDFPNAYG---TPF----YPSQPVYQSAPIIVP 127
>gi|4557317 annexin A11 [Homo sapiens]
Length = 505
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 2 PAASYPVQYPSPYPAQPMGPPAYFETLAGGAATP-YPTSQPPSNPDYMDAPKAAP 55
P +YP Q P P P Q P+Y G TP P +Q S DAP P
Sbjct: 148 PPVTYPGQPPVPLPGQQQPVPSYPGYPGSGTVTPAVPPTQFGSRGTITDAPGFDP 202
Score = 27.3 bits (59), Expect = 2.6
Identities = 20/45 (44%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 5 SYPVQYPSPY---PAQPMGPPAYFETLAGGAATPYPTSQPPSNPD 46
SYP P P PA P G P GGAA P P S PP D
Sbjct: 2 SYPGYPPPPGGYPPAAPGGGPW------GGAAYPPPPSMPPIGLD 40
Score = 26.9 bits (58), Expect = 3.4
Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 12/63 (19%)
Query: 5 SYPVQYPSPYPAQPMGPPAYFE----------TLAGGAATPYPTSQP--PSNPDYMDAPK 52
SYP +P P QPM PP T G P P Q PS P Y +
Sbjct: 119 SYPPYPGAPVPGQPMPPPGQQPPGAYPGQPPVTYPGQPPVPLPGQQQPVPSYPGYPGSGT 178
Query: 53 AAP 55
P
Sbjct: 179 VTP 181
>gi|22165433 annexin A11 [Homo sapiens]
Length = 505
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 2 PAASYPVQYPSPYPAQPMGPPAYFETLAGGAATP-YPTSQPPSNPDYMDAPKAAP 55
P +YP Q P P P Q P+Y G TP P +Q S DAP P
Sbjct: 148 PPVTYPGQPPVPLPGQQQPVPSYPGYPGSGTVTPAVPPTQFGSRGTITDAPGFDP 202
Score = 27.3 bits (59), Expect = 2.6
Identities = 20/45 (44%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 5 SYPVQYPSPY---PAQPMGPPAYFETLAGGAATPYPTSQPPSNPD 46
SYP P P PA P G P GGAA P P S PP D
Sbjct: 2 SYPGYPPPPGGYPPAAPGGGPW------GGAAYPPPPSMPPIGLD 40
Score = 26.9 bits (58), Expect = 3.4
Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 12/63 (19%)
Query: 5 SYPVQYPSPYPAQPMGPPAYFE----------TLAGGAATPYPTSQP--PSNPDYMDAPK 52
SYP +P P QPM PP T G P P Q PS P Y +
Sbjct: 119 SYPPYPGAPVPGQPMPPPGQQPPGAYPGQPPVTYPGQPPVPLPGQQQPVPSYPGYPGSGT 178
Query: 53 AAP 55
P
Sbjct: 179 VTP 181
>gi|22165431 annexin A11 [Homo sapiens]
Length = 505
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 2 PAASYPVQYPSPYPAQPMGPPAYFETLAGGAATP-YPTSQPPSNPDYMDAPKAAP 55
P +YP Q P P P Q P+Y G TP P +Q S DAP P
Sbjct: 148 PPVTYPGQPPVPLPGQQQPVPSYPGYPGSGTVTPAVPPTQFGSRGTITDAPGFDP 202
Score = 27.3 bits (59), Expect = 2.6
Identities = 20/45 (44%), Positives = 20/45 (44%), Gaps = 9/45 (20%)
Query: 5 SYPVQYPSPY---PAQPMGPPAYFETLAGGAATPYPTSQPPSNPD 46
SYP P P PA P G P GGAA P P S PP D
Sbjct: 2 SYPGYPPPPGGYPPAAPGGGPW------GGAAYPPPPSMPPIGLD 40
Score = 26.9 bits (58), Expect = 3.4
Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 12/63 (19%)
Query: 5 SYPVQYPSPYPAQPMGPPAYFE----------TLAGGAATPYPTSQP--PSNPDYMDAPK 52
SYP +P P QPM PP T G P P Q PS P Y +
Sbjct: 119 SYPPYPGAPVPGQPMPPPGQQPPGAYPGQPPVTYPGQPPVPLPGQQQPVPSYPGYPGSGT 178
Query: 53 AAP 55
P
Sbjct: 179 VTP 181
>gi|211904149 DAZ associated protein 2 isoform f [Homo sapiens]
Length = 153
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 9 QYPSP--YPAQPMGPPAYFETLAGGAATPYPTSQPPS 43
QYP+ YP QP G P Y +TL A PY T PP+
Sbjct: 6 QYPTQPTYPVQPPGNPVYPQTLHLPQAPPY-TDAPPA 41
>gi|211904145 DAZ associated protein 2 isoform e [Homo sapiens]
Length = 86
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 9 QYPSP--YPAQPMGPPAYFETLAGGAATPYPTSQPPS 43
QYP+ YP QP G P Y +TL A PY T PP+
Sbjct: 6 QYPTQPTYPVQPPGNPVYPQTLHLPQAPPY-TDAPPA 41
>gi|211904142 DAZ associated protein 2 isoform d [Homo sapiens]
Length = 136
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 9 QYPSP--YPAQPMGPPAYFETLAGGAATPYPTSQPPS 43
QYP+ YP QP G P Y +TL A PY T PP+
Sbjct: 6 QYPTQPTYPVQPPGNPVYPQTLHLPQAPPY-TDAPPA 41
>gi|211904140 DAZ associated protein 2 isoform c [Homo sapiens]
Length = 207
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 9 QYPSP--YPAQPMGPPAYFETLAGGAATPYPTSQPPS 43
QYP+ YP QP G P Y +TL A PY T PP+
Sbjct: 6 QYPTQPTYPVQPPGNPVYPQTLHLPQAPPY-TDAPPA 41
>gi|211904135 DAZ associated protein 2 isoform b [Homo sapiens]
Length = 146
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 9 QYPSP--YPAQPMGPPAYFETLAGGAATPYPTSQPPS 43
QYP+ YP QP G P Y +TL A PY T PP+
Sbjct: 6 QYPTQPTYPVQPPGNPVYPQTLHLPQAPPY-TDAPPA 41
>gi|7661886 DAZ associated protein 2 isoform a [Homo sapiens]
Length = 168
Score = 31.6 bits (70), Expect = 0.14
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 9 QYPSP--YPAQPMGPPAYFETLAGGAATPYPTSQPPS 43
QYP+ YP QP G P Y +TL A PY T PP+
Sbjct: 6 QYPTQPTYPVQPPGNPVYPQTLHLPQAPPY-TDAPPA 41
>gi|171543895 ataxin 2 [Homo sapiens]
Length = 1313
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 8 VQYPSPYPAQPMGPPAYFE----TLAGGAATP-YPTSQPPSNP 45
V +PSP P+ PP+ ++ +L AATP P S+PPS P
Sbjct: 550 VPWPSPCPSPSSRPPSRYQSGPNSLPPRAATPTRPPSRPPSRP 592
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 31.2 bits (69), Expect = 0.18
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 2 PAASYPVQYPS-----PYPAQPMGPPAYFETLAGGAATPYPTSQPP 42
P+A PVQ P P PA P+ PP +A +P P +PP
Sbjct: 205 PSALQPVQLPRLALSPPPPAPPLPPPPPLAQVAPSPPSPPPPPRPP 250
>gi|183396804 Regulation of nuclear pre-mRNA domain containing 2 [Homo
sapiens]
Length = 1461
Score = 31.2 bits (69), Expect = 0.18
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 13 PYPAQPMGPPAYFETLAGGAATPYPTSQPPSNP 45
P+P P PP + +GG+ P+ T PP P
Sbjct: 1266 PFPTPPPPPPPGEHSSSGGSGVPFSTPPPPPPP 1298
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 31.2 bits (69), Expect = 0.18
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 2 PAASYPVQYPSPYPAQPMGPPAYFETLAGGAATP--YPTSQPPSNPDYMDAPKAAP 55
PA +P + + + + P P E G AA+P P+S+PPS P + A P
Sbjct: 141 PAPPHPRESTTSFASAPPRPAPGLEPQRGPAASPPQEPSSRPPSPPAGLSTEPAGP 196
>gi|14165278 hypothetical protein LOC84418 [Homo sapiens]
Length = 97
Score = 31.2 bits (69), Expect = 0.18
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 16/51 (31%)
Query: 2 PAASYPVQYPSPYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPK 52
P A YP PYP QPMGP G PYP PP Y P+
Sbjct: 14 PTAPYP-----PYPPQPMGP--------GPMGGPYP---PPQGYPYQGYPQ 48
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 31.2 bits (69), Expect = 0.18
Identities = 25/77 (32%), Positives = 27/77 (35%), Gaps = 26/77 (33%)
Query: 2 PAASYPVQYPSPYPAQP--------------------MGPPAYFETLAGGAATP--YPTS 39
P + P P PYPA P GPPA + G TP YPT
Sbjct: 162 PTPNMPYPSPGPYPAPPPPQAPGAAPPVPWGTVPPGAWGPPAPYPAPTGSYPTPGLYPT- 220
Query: 40 QPPSNP-DYMDAPKAAP 55
PSNP P AP
Sbjct: 221 --PSNPFQVPSGPSGAP 235
>gi|12751477 forkhead box L2 [Homo sapiens]
Length = 376
Score = 30.8 bits (68), Expect = 0.24
Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 15/63 (23%)
Query: 2 PAASYPVQYPSPYP---------AQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPK 52
PAA P +P P+P A P PP + GAA P P P++P P
Sbjct: 281 PAAPPPPPHPHPHPHAHHLHAAAAPPPAPPHH------GAAAPPPGQLSPASPATAAPPA 334
Query: 53 AAP 55
AP
Sbjct: 335 PAP 337
>gi|33946327 nucleoporin 214kDa [Homo sapiens]
Length = 2090
Score = 30.8 bits (68), Expect = 0.24
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 16/66 (24%)
Query: 3 AASYPVQYPSPYPAQPMGPPAYFETL-AGGAATPYP------------TSQPPSNPDYMD 49
AA+ P P P+ P P A F L AGGA T + T +PPS D
Sbjct: 451 AAAAPASLP---PSSPAAPIATFSLLPAGGAPTVFSFGSSSLKSSATVTGEPPSYSSGSD 507
Query: 50 APKAAP 55
+ KAAP
Sbjct: 508 SSKAAP 513
Score = 27.3 bits (59), Expect = 2.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 2 PAASYPVQYPSPYPAQPMGPPAYFETL-------AGGAATPYPT 38
PAAS P+ +P+P A P P L A G+++P P+
Sbjct: 618 PAASGPLSHPTPLSAPPSSVPLKSSVLPSPSGRSAQGSSSPVPS 661
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 30.8 bits (68), Expect = 0.24
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 10/43 (23%)
Query: 13 PYPAQPMGPPAYFETLAGGAATPYPTSQPPSNPDYMDAPKAAP 55
P+P+ GPP + A P P SQPP P P+AAP
Sbjct: 966 PHPSSQSGPPLHHS-----GAPPPPPSQPPRQP-----PQAAP 998
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.130 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,418,491
Number of Sequences: 37866
Number of extensions: 185459
Number of successful extensions: 1846
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 1442
Number of HSP's gapped (non-prelim): 544
length of query: 55
length of database: 18,247,518
effective HSP length: 29
effective length of query: 26
effective length of database: 17,149,404
effective search space: 445884504
effective search space used: 445884504
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.