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Search of human proteins with 239746611
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239746611 PREDICTED: hypothetical protein XP_002343792 [Homo
sapiens]
(115 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757605 PREDICTED: hypothetical protein [Homo sapiens] 247 1e-66
gi|239752107 PREDICTED: hypothetical protein [Homo sapiens] 247 1e-66
gi|239746611 PREDICTED: hypothetical protein XP_002343792 [Homo ... 247 1e-66
gi|169169909 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|169168836 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|169169475 PREDICTED: hypothetical protein [Homo sapiens] 30 0.31
gi|239757277 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|239751780 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|239746275 PREDICTED: hypothetical protein XP_002343721 [Homo ... 29 0.92
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 29 0.92
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 29 0.92
gi|7662486 ring finger protein 44 [Homo sapiens] 29 0.92
gi|11119430 testis-specific kinase substrate [Homo sapiens] 28 1.2
gi|239753867 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo ... 28 1.6
gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo ... 28 1.6
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 28 1.6
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 28 1.6
gi|169161980 PREDICTED: similar to FUS interacting protein (seri... 28 2.0
gi|56786157 activating transcription factor 6 [Homo sapiens] 27 2.7
gi|40548384 multidrug resistance-related protein [Homo sapiens] 27 2.7
gi|40548382 multidrug resistance-related protein [Homo sapiens] 27 2.7
gi|151301137 AT-hook transcription factor [Homo sapiens] 27 3.5
gi|21450729 hypothetical protein LOC219833 [Homo sapiens] 27 3.5
gi|239754993 PREDICTED: hypothetical protein [Homo sapiens] 26 5.9
gi|239752488 PREDICTED: FLJ40296 protein family member [Homo sap... 26 5.9
gi|194018553 solute carrier family 9 isoform 3 regulator 2 isofo... 26 5.9
gi|71897229 solute carrier family 9 isoform 3 regulator 2 isofor... 26 5.9
gi|38348198 proline rich 20 [Homo sapiens] 26 5.9
gi|194353955 hypothetical protein LOC729250 [Homo sapiens] 26 5.9
>gi|239757605 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 247 bits (631), Expect = 1e-66
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MTNPWALALTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSV 60
MTNPWALALTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSV
Sbjct: 1 MTNPWALALTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSV 60
Query: 61 VASRHLSRAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWRS 115
VASRHLSRAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWRS
Sbjct: 61 VASRHLSRAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWRS 115
>gi|239752107 PREDICTED: hypothetical protein [Homo sapiens]
Length = 115
Score = 247 bits (631), Expect = 1e-66
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MTNPWALALTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSV 60
MTNPWALALTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSV
Sbjct: 1 MTNPWALALTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSV 60
Query: 61 VASRHLSRAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWRS 115
VASRHLSRAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWRS
Sbjct: 61 VASRHLSRAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWRS 115
>gi|239746611 PREDICTED: hypothetical protein XP_002343792 [Homo
sapiens]
Length = 115
Score = 247 bits (631), Expect = 1e-66
Identities = 115/115 (100%), Positives = 115/115 (100%)
Query: 1 MTNPWALALTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSV 60
MTNPWALALTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSV
Sbjct: 1 MTNPWALALTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSV 60
Query: 61 VASRHLSRAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWRS 115
VASRHLSRAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWRS
Sbjct: 61 VASRHLSRAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWRS 115
>gi|169169909 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 91 RSPSSHVGPRGD------LGGREDGRGAWRS 115
RSP G RG+ LG +E GRG WRS
Sbjct: 110 RSPRPRTGTRGEGAHLVLLGRKESGRGGWRS 140
>gi|169168836 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 91 RSPSSHVGPRGD------LGGREDGRGAWRS 115
RSP G RG+ LG +E GRG WRS
Sbjct: 110 RSPRPRTGTRGEGAHLVLLGRKESGRGGWRS 140
>gi|169169475 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 30.4 bits (67), Expect = 0.31
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 91 RSPSSHVGPRGD------LGGREDGRGAWRS 115
RSP G RG+ LG +E GRG WRS
Sbjct: 110 RSPRPRTGTRGEGAHLVSLGRKESGRGGWRS 140
>gi|239757277 PREDICTED: hypothetical protein [Homo sapiens]
Length = 201
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 68 RAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGR 110
RA C HSF N P W R +GP GG E R
Sbjct: 30 RATVCSHSFQPLNQPARMPTWSRNIMVPGLGPGSGDGGGEGQR 72
>gi|239751780 PREDICTED: hypothetical protein [Homo sapiens]
Length = 201
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 68 RAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGR 110
RA C HSF N P W R +GP GG E R
Sbjct: 30 RATVCSHSFQPLNQPARMPTWSRNIMVPGLGPGSGDGGGEGQR 72
>gi|239746275 PREDICTED: hypothetical protein XP_002343721 [Homo
sapiens]
Length = 201
Score = 28.9 bits (63), Expect = 0.92
Identities = 16/43 (37%), Positives = 17/43 (39%)
Query: 68 RAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGR 110
RA C HSF N P W R +GP GG E R
Sbjct: 30 RATVCSHSFQPLNQPARMPTWSRNIMVPGLGPGSGDGGGEGQR 72
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 28.9 bits (63), Expect = 0.92
Identities = 35/113 (30%), Positives = 39/113 (34%), Gaps = 18/113 (15%)
Query: 11 PRRRWWP-RARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSVVASRHLSRA 69
PRRR P RARP P P PAP R P A S A R
Sbjct: 85 PRRRGSPERARPPPPPPP-------PAPPRPPPAAPSPPAAPGPRGGGASPGARRSDFLQ 137
Query: 70 FTCVHSFALKNSPRSTHRWP--------RRSPSSHVGPRGDLGGREDGRGAWR 114
T +SF + PR HR +P GP L G G G W+
Sbjct: 138 KTGSNSFTVH--PRGLHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSGQWK 188
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 28.9 bits (63), Expect = 0.92
Identities = 35/113 (30%), Positives = 39/113 (34%), Gaps = 18/113 (15%)
Query: 11 PRRRWWP-RARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSVVASRHLSRA 69
PRRR P RARP P P PAP R P A S A R
Sbjct: 85 PRRRGSPERARPPPPPPP-------PAPPRPPPAAPSPPAAPGPRGGGASPGARRSDFLQ 137
Query: 70 FTCVHSFALKNSPRSTHRWP--------RRSPSSHVGPRGDLGGREDGRGAWR 114
T +SF + PR HR +P GP L G G G W+
Sbjct: 138 KTGSNSFTVH--PRGLHRGAGARLLSNGHSAPEPRAGPANRLAGSPPGSGQWK 188
>gi|7662486 ring finger protein 44 [Homo sapiens]
Length = 432
Score = 28.9 bits (63), Expect = 0.92
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 4/32 (12%)
Query: 4 PWALALTPRRRWWPRARPSGQPRPSRGSSLVP 35
PWALA+T WP + P GQ R S G P
Sbjct: 3 PWALAVTR----WPPSAPVGQRRFSAGPGSTP 30
>gi|11119430 testis-specific kinase substrate [Homo sapiens]
Length = 592
Score = 28.5 bits (62), Expect = 1.2
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 21 PSGQP-RPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSVVASRHLSRAFTCVHSFALK 79
P G P +PSR LVPA W + RA V+ + L + FT + +
Sbjct: 285 PPGSPDKPSRPHGLVPAGWGMGP------RA-----GEGPYVSEQELQKLFTGIEELRRE 333
Query: 80 NSPRSTHRWPRRSPSSHVGPR--GDLGGREDG-RGAW 113
S T RW + + R G LGGR DG G W
Sbjct: 334 VS-SLTARWHQEEGAVQEALRLLGGLGGRVDGFLGQW 369
>gi|239753867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 215
Score = 28.1 bits (61), Expect = 1.6
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 9 LTPRRRWWPRARPSGQPRPSRGSSLVPAPWR-----VRVDRCLPFRAVL----IANAAQS 59
L PRRRW P A P RP ++ P + RV L +R +L +A A S
Sbjct: 63 LRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGALLS 122
Query: 60 VVASRHLSRAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWR 114
+ S LS + +++ R TH R VG +G RGA R
Sbjct: 123 LSVSLTLSLPGWKFPLTSREHTDRRTH--ARTQRGREVGSLPGVGEARTSRGAVR 175
>gi|239748428 PREDICTED: hypothetical protein XP_002346657 [Homo
sapiens]
Length = 215
Score = 28.1 bits (61), Expect = 1.6
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 9 LTPRRRWWPRARPSGQPRPSRGSSLVPAPWR-----VRVDRCLPFRAVL----IANAAQS 59
L PRRRW P A P RP ++ P + RV L +R +L +A A S
Sbjct: 63 LRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGALLS 122
Query: 60 VVASRHLSRAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWR 114
+ S LS + +++ R TH R VG +G RGA R
Sbjct: 123 LSVSLTLSLPGWKFPLTSREHTDRRTH--ARTQRGREVGSLPGVGEARTSRGAVR 175
>gi|239742361 PREDICTED: hypothetical protein XP_002342502 [Homo
sapiens]
Length = 215
Score = 28.1 bits (61), Expect = 1.6
Identities = 34/115 (29%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 9 LTPRRRWWPRARPSGQPRPSRGSSLVPAPWR-----VRVDRCLPFRAVL----IANAAQS 59
L PRRRW P A P RP ++ P + RV L +R +L +A A S
Sbjct: 63 LRPRRRWAPGAGPVAACRPRAAAAGGPTDGKGRGSCQRVAGPLRWRNLLFLPRLAGALLS 122
Query: 60 VVASRHLSRAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWR 114
+ S LS + +++ R TH R VG +G RGA R
Sbjct: 123 LSVSLTLSLPGWKFPLTSREHTDRRTH--ARTQRGREVGSLPGVGEARTSRGAVR 175
>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
sapiens]
Length = 439
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 71 TCVHSFALKNSPRSTHRWPRRSPSSHVGPRGD 102
T V + L+++P HR R P S VGPR +
Sbjct: 334 TPVSAPTLRSAPLDAHRLRERLPESSVGPRAE 365
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 28.1 bits (61), Expect = 1.6
Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 12 RRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSVVASRHLSRAFT 71
RRR R P+ + R +S PAPW+ R P A + +++ + SR SR+ T
Sbjct: 1837 RRRGRSRTPPTSRKRSRSRTS--PAPWKRSRSRASP--ATHRRSRSRTPLISRRRSRSRT 1892
Query: 72 CVHSFALKNSPRSTHRWPRRSPSSHVGPR 100
S S S R RS +S V R
Sbjct: 1893 SPVSRRRSRSRTSVTRRRSRSRASPVSRR 1921
>gi|169161980 PREDICTED: similar to FUS interacting protein
(serine-arginine rich) 1, partial [Homo sapiens]
Length = 181
Score = 27.7 bits (60), Expect = 2.0
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 12 RRRWWPRARPSGQPRPSRGSS 32
RR + PR RP+G+PR SR S
Sbjct: 139 RRSYSPRNRPTGRPRRSRSHS 159
>gi|56786157 activating transcription factor 6 [Homo sapiens]
Length = 670
Score = 27.3 bits (59), Expect = 2.7
Identities = 13/45 (28%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 9 LTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLI 53
LTP+++ ++PS QP+P L+PA + + + +P + ++I
Sbjct: 165 LTPKKKIQVNSKPSIQPKP----LLLPAAPKTQTNSSVPAKTIII 205
>gi|40548384 multidrug resistance-related protein [Homo sapiens]
Length = 117
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 2 TNPWALALTPRRRWWPRARPSGQPRPSRGSSLVPAP 37
T W L+ TPRRRW SG PR S P P
Sbjct: 39 TRTWLLSHTPRRRW-----ISGLPRASCRLGEEPPP 69
>gi|40548382 multidrug resistance-related protein [Homo sapiens]
Length = 117
Score = 27.3 bits (59), Expect = 2.7
Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 5/36 (13%)
Query: 2 TNPWALALTPRRRWWPRARPSGQPRPSRGSSLVPAP 37
T W L+ TPRRRW SG PR S P P
Sbjct: 39 TRTWLLSHTPRRRW-----ISGLPRASCRLGEEPPP 69
>gi|151301137 AT-hook transcription factor [Homo sapiens]
Length = 1439
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 4/53 (7%)
Query: 11 PRRRWWPRARPSGQPRPSRG----SSLVPAPWRVRVDRCLPFRAVLIANAAQS 59
P+ W + + S +P PSR S L P P R R LP + +A + S
Sbjct: 292 PKEHIWKQTKTSPKPLPSRFIGSISPLNPQPRPTRQGRPLPRQGATLAGRSSS 344
>gi|21450729 hypothetical protein LOC219833 [Homo sapiens]
Length = 145
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 5 WAL--ALTPRRRWWPRARPSGQPRPSRGSSLVPAPWRVRVDRCLPFRAVLIANAAQSVVA 62
W L L P R WP+ P+G+ R + W + + ++ +SV++
Sbjct: 26 WELDNVLMPSPRIWPQVTPTGRSASVRSEGNTSSLWNFSAGQDV---HAIVTRTCESVLS 82
Query: 63 SRHLSRAFTCVHS 75
S + CV S
Sbjct: 83 SAVYTHGCGCVRS 95
>gi|239754993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 26.2 bits (56), Expect = 5.9
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 4 PWALALTPRRRWWPRARPS----GQPRPSRGSSLVP 35
P LAL + R WPRA+PS G P R S P
Sbjct: 145 PIGLALACKSRRWPRAQPSRMSPGPPLWERRQSYWP 180
>gi|239752488 PREDICTED: FLJ40296 protein family member [Homo
sapiens]
Length = 221
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 83 RSTHRWPRRSPSSHVGPRGDLGGREDGRG 111
R R P R GPRGD G R+ G
Sbjct: 78 RGGSRRPGRGRGRRAGPRGDAGQRQGAEG 106
>gi|194018553 solute carrier family 9 isoform 3 regulator 2 isoform
a [Homo sapiens]
Length = 337
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 68 RAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWR 114
R TC A + P + W + +H G G++D G R
Sbjct: 99 RQLTCTEEMAQRGLPPAHDPWEPKPDWAHTGSHSSEAGKKDVSGPLR 145
>gi|71897229 solute carrier family 9 isoform 3 regulator 2 isoform b
[Homo sapiens]
Length = 326
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 68 RAFTCVHSFALKNSPRSTHRWPRRSPSSHVGPRGDLGGREDGRGAWR 114
R TC A + P + W + +H G G++D G R
Sbjct: 99 RQLTCTEEMAQRGLPPAHDPWEPKPDWAHTGSHSSEAGKKDVSGPLR 145
>gi|38348198 proline rich 20 [Homo sapiens]
Length = 221
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 83 RSTHRWPRRSPSSHVGPRGDLGGREDGRG 111
R R P R GPRGD G R+ G
Sbjct: 78 RGGSRRPGRGRGRRAGPRGDAGQRQGAEG 106
>gi|194353955 hypothetical protein LOC729250 [Homo sapiens]
Length = 221
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 83 RSTHRWPRRSPSSHVGPRGDLGGREDGRG 111
R R P R GPRGD G R+ G
Sbjct: 78 RGGSRRPGRGRGRRAGPRGDAGQRQGAEG 106
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.133 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,411,885
Number of Sequences: 37866
Number of extensions: 242934
Number of successful extensions: 1179
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 1150
Number of HSP's gapped (non-prelim): 47
length of query: 115
length of database: 18,247,518
effective HSP length: 85
effective length of query: 30
effective length of database: 15,028,908
effective search space: 450867240
effective search space used: 450867240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.