Guide to the Human Genome
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Search of human proteins with 239745167

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239745167 PREDICTED: hypothetical protein XP_002343386 [Homo
sapiens]
         (283 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239750807 PREDICTED: hypothetical protein XP_002347566 [Homo ...   576   e-165
gi|239745167 PREDICTED: hypothetical protein XP_002343386 [Homo ...   576   e-165
gi|239756280 PREDICTED: hypothetical protein XP_002344872 [Homo ...   574   e-164
gi|239754856 PREDICTED: p150-like [Homo sapiens]                      253   1e-67
gi|239749395 PREDICTED: p150-like [Homo sapiens]                      253   1e-67
gi|239743530 PREDICTED: p150-like [Homo sapiens]                      252   3e-67
gi|239754371 PREDICTED: hypothetical protein [Homo sapiens]           143   2e-34
gi|239748922 PREDICTED: hypothetical protein [Homo sapiens]           143   2e-34
gi|239742944 PREDICTED: hypothetical protein [Homo sapiens]           143   2e-34
gi|239754376 PREDICTED: similar to putative p150 [Homo sapiens]       142   3e-34
gi|239748989 PREDICTED: hypothetical protein XP_002346845 [Homo ...   142   3e-34
gi|239743009 PREDICTED: hypothetical protein XP_002342695 [Homo ...   142   3e-34
gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo ...    30   1.8  
gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo ...    30   1.8  
gi|237681069 spatacsin isoform 2 [Homo sapiens]                        30   1.8  
gi|93204888 spatacsin isoform 1 [Homo sapiens]                         30   1.8  
gi|157266300 membrane alanine aminopeptidase precursor [Homo sap...    30   2.4  
gi|33598968 LIM domain only 7 isoform 1 [Homo sapiens]                 29   4.1  
gi|56676335 RAP1 interacting factor 1 [Homo sapiens]                   28   9.1  
gi|116089292 tetratricopeptide repeat domain 21B [Homo sapiens]        28   9.1  

>gi|239750807 PREDICTED: hypothetical protein XP_002347566 [Homo
           sapiens]
          Length = 283

 Score =  576 bits (1485), Expect = e-165
 Identities = 283/283 (100%), Positives = 283/283 (100%)

Query: 1   MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN 60
           MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN
Sbjct: 1   MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN 60

Query: 61  LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV 120
           LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV
Sbjct: 61  LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV 120

Query: 121 KDLFKENYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF 180
           KDLFKENYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF
Sbjct: 121 KDLFKENYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF 180

Query: 181 TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID 240
           TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID
Sbjct: 181 TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID 240

Query: 241 QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG 283
           QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG
Sbjct: 241 QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG 283


>gi|239745167 PREDICTED: hypothetical protein XP_002343386 [Homo
           sapiens]
          Length = 283

 Score =  576 bits (1485), Expect = e-165
 Identities = 283/283 (100%), Positives = 283/283 (100%)

Query: 1   MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN 60
           MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN
Sbjct: 1   MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN 60

Query: 61  LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV 120
           LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV
Sbjct: 61  LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV 120

Query: 121 KDLFKENYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF 180
           KDLFKENYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF
Sbjct: 121 KDLFKENYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF 180

Query: 181 TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID 240
           TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID
Sbjct: 181 TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID 240

Query: 241 QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG 283
           QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG
Sbjct: 241 QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG 283


>gi|239756280 PREDICTED: hypothetical protein XP_002344872 [Homo
           sapiens]
          Length = 283

 Score =  574 bits (1480), Expect = e-164
 Identities = 282/283 (99%), Positives = 283/283 (100%)

Query: 1   MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN 60
           MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN
Sbjct: 1   MSRLQKSPLLFNIVLEVLARAIKQEKEIKGIQLGKEEVKLSLFADDMIVYLENPIVSAQN 60

Query: 61  LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV 120
           LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV
Sbjct: 61  LLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDV 120

Query: 121 KDLFKENYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF 180
           KDLFKE+YKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF
Sbjct: 121 KDLFKEDYKPLLNEIKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFF 180

Query: 181 TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID 240
           TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID
Sbjct: 181 TELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDID 240

Query: 241 QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG 283
           QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG
Sbjct: 241 QWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWWWKAG 283


>gi|239754856 PREDICTED: p150-like [Homo sapiens]
          Length = 262

 Score =  253 bits (647), Expect = 1e-67
 Identities = 117/126 (92%), Positives = 121/126 (96%)

Query: 156 VKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITL 215
           +KMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRA IAKS LSQKNK GGITL
Sbjct: 1   MKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAHIAKSILSQKNKAGGITL 60

Query: 216 PDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLF 275
           PDFKLYYKATVTKT+WYWYQNRDIDQWNRTEPSEI PHIYNYLIFDKP+KNKQWGKDSLF
Sbjct: 61  PDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSLF 120

Query: 276 NKWWWK 281
           NKW W+
Sbjct: 121 NKWCWE 126


>gi|239749395 PREDICTED: p150-like [Homo sapiens]
          Length = 262

 Score =  253 bits (647), Expect = 1e-67
 Identities = 117/126 (92%), Positives = 121/126 (96%)

Query: 156 VKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITL 215
           +KMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRA IAKS LSQKNK GGITL
Sbjct: 1   MKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAHIAKSILSQKNKAGGITL 60

Query: 216 PDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLF 275
           PDFKLYYKATVTKT+WYWYQNRDIDQWNRTEPSEI PHIYNYLIFDKP+KNKQWGKDSLF
Sbjct: 61  PDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSLF 120

Query: 276 NKWWWK 281
           NKW W+
Sbjct: 121 NKWCWE 126


>gi|239743530 PREDICTED: p150-like [Homo sapiens]
          Length = 262

 Score =  252 bits (643), Expect = 3e-67
 Identities = 116/126 (92%), Positives = 121/126 (96%)

Query: 156 VKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRALIAKSSLSQKNKTGGITL 215
           ++MAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRA IAKS LSQKNK GGITL
Sbjct: 1   MQMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRAHIAKSILSQKNKAGGITL 60

Query: 216 PDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLF 275
           PDFKLYYKATVTKT+WYWYQNRDIDQWNRTEPSEI PHIYNYLIFDKP+KNKQWGKDSLF
Sbjct: 61  PDFKLYYKATVTKTAWYWYQNRDIDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSLF 120

Query: 276 NKWWWK 281
           NKW W+
Sbjct: 121 NKWCWE 126


>gi|239754371 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 224

 Score =  143 bits (360), Expect = 2e-34
 Identities = 61/81 (75%), Positives = 70/81 (86%)

Query: 201 KSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIF 260
           K SL +KN  GGI LPDFKL+YKATVTKT+WYWYQNR IDQW+RTE SEI  H+YN+LIF
Sbjct: 29  KCSLMEKNTAGGIMLPDFKLHYKATVTKTAWYWYQNRHIDQWSRTETSEIKQHVYNHLIF 88

Query: 261 DKPDKNKQWGKDSLFNKWWWK 281
           DKPDKNK+WGKD LF+KW W+
Sbjct: 89  DKPDKNKKWGKDLLFSKWCWE 109


>gi|239748922 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 224

 Score =  143 bits (360), Expect = 2e-34
 Identities = 61/81 (75%), Positives = 70/81 (86%)

Query: 201 KSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIF 260
           K SL +KN  GGI LPDFKL+YKATVTKT+WYWYQNR IDQW+RTE SEI  H+YN+LIF
Sbjct: 29  KCSLMEKNTAGGIMLPDFKLHYKATVTKTAWYWYQNRHIDQWSRTETSEIKQHVYNHLIF 88

Query: 261 DKPDKNKQWGKDSLFNKWWWK 281
           DKPDKNK+WGKD LF+KW W+
Sbjct: 89  DKPDKNKKWGKDLLFSKWCWE 109


>gi|239742944 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 224

 Score =  143 bits (360), Expect = 2e-34
 Identities = 61/81 (75%), Positives = 70/81 (86%)

Query: 201 KSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIF 260
           K SL +KN  GGI LPDFKL+YKATVTKT+WYWYQNR IDQW+RTE SEI  H+YN+LIF
Sbjct: 29  KCSLMEKNTAGGIMLPDFKLHYKATVTKTAWYWYQNRHIDQWSRTETSEIKQHVYNHLIF 88

Query: 261 DKPDKNKQWGKDSLFNKWWWK 281
           DKPDKNK+WGKD LF+KW W+
Sbjct: 89  DKPDKNKKWGKDLLFSKWCWE 109


>gi|239754376 PREDICTED: similar to putative p150 [Homo sapiens]
          Length = 295

 Score =  142 bits (358), Expect = 3e-34
 Identities = 61/67 (91%), Positives = 64/67 (95%)

Query: 215 LPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSL 274
           LPDFKLYYKATVTKT+WY YQNRDIDQWNRTEPSEI PHIYNYLIFDKP+KNKQWGKDSL
Sbjct: 2   LPDFKLYYKATVTKTAWYRYQNRDIDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSL 61

Query: 275 FNKWWWK 281
           FNKW W+
Sbjct: 62  FNKWCWE 68


>gi|239748989 PREDICTED: hypothetical protein XP_002346845 [Homo
           sapiens]
          Length = 295

 Score =  142 bits (358), Expect = 3e-34
 Identities = 61/67 (91%), Positives = 64/67 (95%)

Query: 215 LPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSL 274
           LPDFKLYYKATVTKT+WY YQNRDIDQWNRTEPSEI PHIYNYLIFDKP+KNKQWGKDSL
Sbjct: 2   LPDFKLYYKATVTKTAWYRYQNRDIDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSL 61

Query: 275 FNKWWWK 281
           FNKW W+
Sbjct: 62  FNKWCWE 68


>gi|239743009 PREDICTED: hypothetical protein XP_002342695 [Homo
           sapiens]
          Length = 295

 Score =  142 bits (358), Expect = 3e-34
 Identities = 61/67 (91%), Positives = 64/67 (95%)

Query: 215 LPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSL 274
           LPDFKLYYKATVTKT+WY YQNRDIDQWNRTEPSEI PHIYNYLIFDKP+KNKQWGKDSL
Sbjct: 2   LPDFKLYYKATVTKTAWYRYQNRDIDQWNRTEPSEITPHIYNYLIFDKPEKNKQWGKDSL 61

Query: 275 FNKWWWK 281
           FNKW W+
Sbjct: 62  FNKWCWE 68


>gi|148491080 trinucleotide repeat containing 6B isoform 2 [Homo
           sapiens]
          Length = 1723

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 231 WYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWW 279
           W  Y+N +   W    P E  P  +N    + P K++ WG     N+ W
Sbjct: 698 WNDYKNNNSSNWGGGRPDEKTPSSWN----ENPSKDQGWGGGRQPNQGW 742


>gi|241982729 trinucleotide repeat containing 6B isoform 1 [Homo
           sapiens]
          Length = 1833

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 231 WYWYQNRDIDQWNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFNKWW 279
           W  Y+N +   W    P E  P  +N    + P K++ WG     N+ W
Sbjct: 698 WNDYKNNNSSNWGGGRPDEKTPSSWN----ENPSKDQGWGGGRQPNQGW 742


>gi|237681069 spatacsin isoform 2 [Homo sapiens]
          Length = 2330

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 75  KINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNE 134
           K++ ++  A    NN+  E+Q    +    A K  + +GI L     +L  +N K   N 
Sbjct: 685 KLSFEEVIASAILNNKIPEAQTFFRIDSHSAQKLEELIGIGL-----NLVFDNLKK--NN 737

Query: 135 IKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFI 191
           IKE ++  KN+     G++  +      K I  F  + I     +F+E EK T+ F+
Sbjct: 738 IKEASELLKNMGFDVKGQLLKICFYTTNKNIRDF-LVEILKEKNYFSEKEKRTIDFV 793


>gi|93204888 spatacsin isoform 1 [Homo sapiens]
          Length = 2443

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 8/117 (6%)

Query: 75  KINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNE 134
           K++ ++  A    NN+  E+Q    +    A K  + +GI L     +L  +N K   N 
Sbjct: 685 KLSFEEVIASAILNNKIPEAQTFFRIDSHSAQKLEELIGIGL-----NLVFDNLKK--NN 737

Query: 135 IKEDTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFI 191
           IKE ++  KN+     G++  +      K I  F  + I     +F+E EK T+ F+
Sbjct: 738 IKEASELLKNMGFDVKGQLLKICFYTTNKNIRDF-LVEILKEKNYFSEKEKRTIDFV 793


>gi|157266300 membrane alanine aminopeptidase precursor [Homo
           sapiens]
          Length = 967

 Score = 30.0 bits (66), Expect = 2.4
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 12/98 (12%)

Query: 54  PIVSAQNLLNLISNFSRVSGYKINVQKSQAFLYTNNRQTESQIMSELPFTIASKRIKYLG 113
           P+++   ++N    F+  S +K+ V      L  NN     +    +P+  A   + Y  
Sbjct: 654 PVINRAQIIN--DAFNLASAHKVPVT-----LALNNTLFLIEERQYMPWEAALSSLSYFK 706

Query: 114 IQLTRD-----VKDLFKENYKPLLNEIKEDTKKWKNIP 146
           +   R      +K+  K+   PL    + +T  W+ IP
Sbjct: 707 LMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIP 744


>gi|33598968 LIM domain only 7 isoform 1 [Homo sapiens]
          Length = 1349

 Score = 29.3 bits (64), Expect = 4.1
 Identities = 33/168 (19%), Positives = 71/168 (42%), Gaps = 8/168 (4%)

Query: 85  LYTNNRQTESQIMSELPFTIASKRIKYLGIQLTRDVKDLFKENYKPLLNEIKEDTKKWKN 144
           +YT    T S++  ++     SK +  +  +  ++++ L  E  + + +++KE  +KW++
Sbjct: 347 VYTEADGTFSRLFQKIYGENGSKSMSDVSAEDVQNLRQLRYEEMQKIKSQLKEQDQKWQD 406

Query: 145 IPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRALIAKSSL 204
               W  R       +  K   R     I+      ++    T K +   + +   KS++
Sbjct: 407 DLAKWKDRRKSYTSDLQKKKEEREE---IEKQALEKSKRSSKTFKEMLQDRESQNQKSTV 463

Query: 205 SQKNKTGGI--TLPDFKLYYKATVTKTSWYWYQNRDIDQWNRTEPSEI 250
             + +       L + K     TV++ S   YQ+  +++   T PSEI
Sbjct: 464 PSRRRMYSFDDVLEEGKRPPTMTVSEAS---YQSERVEEKGATYPSEI 508


>gi|56676335 RAP1 interacting factor 1 [Homo sapiens]
          Length = 2472

 Score = 28.1 bits (61), Expect = 9.1
 Identities = 28/104 (26%), Positives = 46/104 (44%), Gaps = 18/104 (17%)

Query: 138 DTKKWKNIPCSWVGRINLVKMAILPKVIYRFNAIPIKLPMTFFTELEKTTLKFIWNQKRA 197
           D  K KN P   +G++  +   ++ KVIY F+ +  K       E    TL  I N    
Sbjct: 788 DWSKKKNEP---LGKLTSL-FKLIVKVIYSFHTLSFK-------EAHSDTLFTIGNSITG 836

Query: 198 LIAKSSLSQKNKTGGITLPDFKLYYKATVTKTSWYWYQNRDIDQ 241
           +I+       +  G I+LP       AT+T+    +Y+N  +D+
Sbjct: 837 IIS-------SVLGHISLPSMIRKIFATLTRPLALFYENSKLDE 873


>gi|116089292 tetratricopeptide repeat domain 21B [Homo sapiens]
          Length = 1316

 Score = 28.1 bits (61), Expect = 9.1
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 6/35 (17%)

Query: 242  WNRTEPSEIMPHIYNYLIFDKPDKNKQWGKDSLFN 276
            W   EP++ + H      F+K  K++ WG+++L+N
Sbjct: 1034 WYTGEPNDALRH------FNKARKDRDWGQNALYN 1062


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,435,957
Number of Sequences: 37866
Number of extensions: 375575
Number of successful extensions: 862
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 845
Number of HSP's gapped (non-prelim): 22
length of query: 283
length of database: 18,247,518
effective HSP length: 101
effective length of query: 182
effective length of database: 14,423,052
effective search space: 2624995464
effective search space used: 2624995464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
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