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Search of human proteins with 239744924
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744924 PREDICTED: hypothetical protein XP_002343309 [Homo
sapiens]
(269 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750617 PREDICTED: hypothetical protein XP_002347474 [Homo ... 533 e-152
gi|239744924 PREDICTED: hypothetical protein XP_002343309 [Homo ... 533 e-152
gi|239756804 PREDICTED: hypothetical protein [Homo sapiens] 32 0.58
gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo ... 32 0.58
gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo ... 32 0.58
gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo sap... 30 2.9
gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo sap... 30 2.9
gi|239755210 PREDICTED: hypothetical protein [Homo sapiens] 29 3.8
gi|239749699 PREDICTED: hypothetical protein XP_002347122 [Homo ... 29 3.8
gi|239743965 PREDICTED: hypothetical protein XP_002344250 [Homo ... 29 3.8
gi|167736355 mucin 4 isoform a [Homo sapiens] 29 4.9
gi|112382231 mucin 4 isoform e [Homo sapiens] 29 4.9
gi|112382233 mucin 4 isoform d [Homo sapiens] 29 4.9
gi|126032350 protein kinase, DNA-activated, catalytic polypeptid... 28 8.4
gi|13654237 protein kinase, DNA-activated, catalytic polypeptide... 28 8.4
gi|113430845 PREDICTED: similar to protein kinase, DNA-activated... 28 8.4
gi|73747887 ADAM metallopeptidase domain 12 isoform 2 preproprot... 28 8.4
gi|73747885 ADAM metallopeptidase domain 12 isoform 1 preproprot... 28 8.4
gi|24415404 MDN1, midasin homolog [Homo sapiens] 28 8.4
gi|89242141 colon cancer-associated protein Mic1 [Homo sapiens] 28 8.4
>gi|239750617 PREDICTED: hypothetical protein XP_002347474 [Homo
sapiens]
Length = 269
Score = 533 bits (1373), Expect = e-152
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MQQLHPLTSLNQLLLRQLPGPLCLLHHGTQLLQLSLQQVVAPLHDGDVLLQVVVGTDCIV 60
MQQLHPLTSLNQLLLRQLPGPLCLLHHGTQLLQLSLQQVVAPLHDGDVLLQVVVGTDCIV
Sbjct: 1 MQQLHPLTSLNQLLLRQLPGPLCLLHHGTQLLQLSLQQVVAPLHDGDVLLQVVVGTDCIV 60
Query: 61 QLNLGYLQQALEALDLLLGLGGHAVGVAELDLHLIEVSFHLLLHPQGLVAAACLCVQGGL 120
QLNLGYLQQALEALDLLLGLGGHAVGVAELDLHLIEVSFHLLLHPQGLVAAACLCVQGGL
Sbjct: 61 QLNLGYLQQALEALDLLLGLGGHAVGVAELDLHLIEVSFHLLLHPQGLVAAACLCVQGGL 120
Query: 121 QRVHHPQVVALGLFHLLVLLCQLPLDLCLDLVELQLGPEDLALLLLSDLLQLMDSLSAGT 180
QRVHHPQVVALGLFHLLVLLCQLPLDLCLDLVELQLGPEDLALLLLSDLLQLMDSLSAGT
Sbjct: 121 QRVHHPQVVALGLFHLLVLLCQLPLDLCLDLVELQLGPEDLALLLLSDLLQLMDSLSAGT 180
Query: 181 QLLSQVGDLLCVGNTAFLSLKSSVLRERASFCEDSSSDCDSSYFCFHSARICPGTRLTLQ 240
QLLSQVGDLLCVGNTAFLSLKSSVLRERASFCEDSSSDCDSSYFCFHSARICPGTRLTLQ
Sbjct: 181 QLLSQVGDLLCVGNTAFLSLKSSVLRERASFCEDSSSDCDSSYFCFHSARICPGTRLTLQ 240
Query: 241 PPSLSPMSRGCSSSIGALYVHHQVLDLIL 269
PPSLSPMSRGCSSSIGALYVHHQVLDLIL
Sbjct: 241 PPSLSPMSRGCSSSIGALYVHHQVLDLIL 269
>gi|239744924 PREDICTED: hypothetical protein XP_002343309 [Homo
sapiens]
Length = 269
Score = 533 bits (1373), Expect = e-152
Identities = 269/269 (100%), Positives = 269/269 (100%)
Query: 1 MQQLHPLTSLNQLLLRQLPGPLCLLHHGTQLLQLSLQQVVAPLHDGDVLLQVVVGTDCIV 60
MQQLHPLTSLNQLLLRQLPGPLCLLHHGTQLLQLSLQQVVAPLHDGDVLLQVVVGTDCIV
Sbjct: 1 MQQLHPLTSLNQLLLRQLPGPLCLLHHGTQLLQLSLQQVVAPLHDGDVLLQVVVGTDCIV 60
Query: 61 QLNLGYLQQALEALDLLLGLGGHAVGVAELDLHLIEVSFHLLLHPQGLVAAACLCVQGGL 120
QLNLGYLQQALEALDLLLGLGGHAVGVAELDLHLIEVSFHLLLHPQGLVAAACLCVQGGL
Sbjct: 61 QLNLGYLQQALEALDLLLGLGGHAVGVAELDLHLIEVSFHLLLHPQGLVAAACLCVQGGL 120
Query: 121 QRVHHPQVVALGLFHLLVLLCQLPLDLCLDLVELQLGPEDLALLLLSDLLQLMDSLSAGT 180
QRVHHPQVVALGLFHLLVLLCQLPLDLCLDLVELQLGPEDLALLLLSDLLQLMDSLSAGT
Sbjct: 121 QRVHHPQVVALGLFHLLVLLCQLPLDLCLDLVELQLGPEDLALLLLSDLLQLMDSLSAGT 180
Query: 181 QLLSQVGDLLCVGNTAFLSLKSSVLRERASFCEDSSSDCDSSYFCFHSARICPGTRLTLQ 240
QLLSQVGDLLCVGNTAFLSLKSSVLRERASFCEDSSSDCDSSYFCFHSARICPGTRLTLQ
Sbjct: 181 QLLSQVGDLLCVGNTAFLSLKSSVLRERASFCEDSSSDCDSSYFCFHSARICPGTRLTLQ 240
Query: 241 PPSLSPMSRGCSSSIGALYVHHQVLDLIL 269
PPSLSPMSRGCSSSIGALYVHHQVLDLIL
Sbjct: 241 PPSLSPMSRGCSSSIGALYVHHQVLDLIL 269
>gi|239756804 PREDICTED: hypothetical protein [Homo sapiens]
Length = 236
Score = 32.0 bits (71), Expect = 0.58
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 70 ALEALDLLLGLGGHAVGV-----AELD------LHLIEVSFHL----LLHPQGLVAAACL 114
AL+ L LLLG ++ V A LD LH + H LLHP G VAA
Sbjct: 47 ALQGLKLLLGWSPSSLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQAR 106
Query: 115 CVQGGLQRVHHPQ 127
GG+ HPQ
Sbjct: 107 AATGGVHPAGHPQ 119
>gi|239751298 PREDICTED: hypothetical protein XP_002347799 [Homo
sapiens]
Length = 236
Score = 32.0 bits (71), Expect = 0.58
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 70 ALEALDLLLGLGGHAVGV-----AELD------LHLIEVSFHL----LLHPQGLVAAACL 114
AL+ L LLLG ++ V A LD LH + H LLHP G VAA
Sbjct: 47 ALQGLKLLLGWSPSSLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQAR 106
Query: 115 CVQGGLQRVHHPQ 127
GG+ HPQ
Sbjct: 107 AATGGVHPAGHPQ 119
>gi|239745795 PREDICTED: hypothetical protein XP_002343591 [Homo
sapiens]
Length = 236
Score = 32.0 bits (71), Expect = 0.58
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
Query: 70 ALEALDLLLGLGGHAVGV-----AELD------LHLIEVSFHL----LLHPQGLVAAACL 114
AL+ L LLLG ++ V A LD LH + H LLHP G VAA
Sbjct: 47 ALQGLKLLLGWSPSSLSVFRGLQAFLDGLDLRQLHAHALPVHQCVQGLLHPSGRVAAQAR 106
Query: 115 CVQGGLQRVHHPQ 127
GG+ HPQ
Sbjct: 107 AATGGVHPAGHPQ 119
>gi|239747203 PREDICTED: hypothetical protein LOC643965 [Homo
sapiens]
Length = 451
Score = 29.6 bits (65), Expect = 2.9
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 2 QQL-HPLTSL-NQLLLRQLPGPLCLLHHGTQLLQLSLQQVVAPLHDGDVLLQVVVGTDCI 59
QQL HP S+ L+ R P P+ H G L Q + Q VAP H QV G C+
Sbjct: 223 QQLGHPRVSVPGGLVQRGAPRPVHRAHRGPSLQQETHQGRVAPQHG-----QVERGPACV 277
Query: 60 VQLN 63
V L+
Sbjct: 278 VHLS 281
>gi|239741003 PREDICTED: hypothetical protein LOC643965 [Homo
sapiens]
Length = 487
Score = 29.6 bits (65), Expect = 2.9
Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 2 QQL-HPLTSL-NQLLLRQLPGPLCLLHHGTQLLQLSLQQVVAPLHDGDVLLQVVVGTDCI 59
QQL HP S+ L+ R P P+ H G L Q + Q VAP H QV G C+
Sbjct: 223 QQLGHPRVSVPGGLVQRGAPRPVHRAHRGPSLQQETHQGRVAPQHG-----QVERGPACV 277
Query: 60 VQLN 63
V L+
Sbjct: 278 VHLS 281
>gi|239755210 PREDICTED: hypothetical protein [Homo sapiens]
Length = 241
Score = 29.3 bits (64), Expect = 3.8
Identities = 52/180 (28%), Positives = 71/180 (39%), Gaps = 44/180 (24%)
Query: 18 LPGPLCLLHHGTQ----LLQLSLQQVVAPLHDGDVLLQVVVGTDCIVQLNLGYLQQALEA 73
L G L LLH G + LLQL Q + PL G LQ V+ A
Sbjct: 85 LDGGLQLLHPGLEQGLLLLQLPQQLLAGPLLHGVPELQRVL------------------A 126
Query: 74 LDLLLGLGGHAVGVAELDLHLIEVSFHLLLHPQGLVAAACLCVQGGLQRVHHPQVVALGL 133
L L + LG H + ++L ++V+ + H +G + L R H QVV L L
Sbjct: 127 LHLAVVLGLHEAVLELVNLQKLQVT---VPHERGALLLT-------LVRQAHGQVVVLLL 176
Query: 134 FHLLVLLCQLPLDLCLDLVELQLGPEDLALLLLSDLL---QLMDSLSAGTQLLSQVGDLL 190
L+L + L L P L+L + QL+D + G Q QV LL
Sbjct: 177 ---------AALELAAAGLALLLEPLHTLLVLAQQAVLHPQLLDEVIFGAQQRGQVLHLL 227
>gi|239749699 PREDICTED: hypothetical protein XP_002347122 [Homo
sapiens]
Length = 241
Score = 29.3 bits (64), Expect = 3.8
Identities = 52/180 (28%), Positives = 71/180 (39%), Gaps = 44/180 (24%)
Query: 18 LPGPLCLLHHGTQ----LLQLSLQQVVAPLHDGDVLLQVVVGTDCIVQLNLGYLQQALEA 73
L G L LLH G + LLQL Q + PL G LQ V+ A
Sbjct: 85 LDGGLQLLHPGLEQGLLLLQLPQQLLAGPLLHGVPELQRVL------------------A 126
Query: 74 LDLLLGLGGHAVGVAELDLHLIEVSFHLLLHPQGLVAAACLCVQGGLQRVHHPQVVALGL 133
L L + LG H + ++L ++V+ + H +G + L R H QVV L L
Sbjct: 127 LHLAVVLGLHEAVLELVNLQKLQVT---VPHERGALLLT-------LVRQAHGQVVVLLL 176
Query: 134 FHLLVLLCQLPLDLCLDLVELQLGPEDLALLLLSDLL---QLMDSLSAGTQLLSQVGDLL 190
L+L + L L P L+L + QL+D + G Q QV LL
Sbjct: 177 ---------AALELAAAGLALLLEPLHTLLVLAQQAVLHPQLLDEVIFGAQQRGQVLHLL 227
>gi|239743965 PREDICTED: hypothetical protein XP_002344250 [Homo
sapiens]
Length = 241
Score = 29.3 bits (64), Expect = 3.8
Identities = 52/180 (28%), Positives = 71/180 (39%), Gaps = 44/180 (24%)
Query: 18 LPGPLCLLHHGTQ----LLQLSLQQVVAPLHDGDVLLQVVVGTDCIVQLNLGYLQQALEA 73
L G L LLH G + LLQL Q + PL G LQ V+ A
Sbjct: 85 LDGGLQLLHPGLEQGLLLLQLPQQLLAGPLLHGVPELQRVL------------------A 126
Query: 74 LDLLLGLGGHAVGVAELDLHLIEVSFHLLLHPQGLVAAACLCVQGGLQRVHHPQVVALGL 133
L L + LG H + ++L ++V+ + H +G + L R H QVV L L
Sbjct: 127 LHLAVVLGLHEAVLELVNLQKLQVT---VPHERGALLLT-------LVRQAHGQVVVLLL 176
Query: 134 FHLLVLLCQLPLDLCLDLVELQLGPEDLALLLLSDLL---QLMDSLSAGTQLLSQVGDLL 190
L+L + L L P L+L + QL+D + G Q QV LL
Sbjct: 177 ---------AALELAAAGLALLLEPLHTLLVLAQQAVLHPQLLDEVIFGAQQRGQVLHLL 227
>gi|167736355 mucin 4 isoform a [Homo sapiens]
Length = 5284
Score = 28.9 bits (63), Expect = 4.9
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 211 FCEDSSSDCDSSYFCFHSARICPGTRLTLQPPSLSPMSRGCSS 253
+CE S C+ CF S PG PP+L+ R C++
Sbjct: 4942 YCEGSEDACEEP--CFPSVHCVPGKGCEACPPNLTGDGRHCAA 4982
>gi|112382231 mucin 4 isoform e [Homo sapiens]
Length = 1125
Score = 28.9 bits (63), Expect = 4.9
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 211 FCEDSSSDCDSSYFCFHSARICPGTRLTLQPPSLSPMSRGCSS 253
+CE S C+ CF S PG PP+L+ R C++
Sbjct: 783 YCEGSEDACEEP--CFPSVHCVPGKGCEACPPNLTGDGRHCAA 823
>gi|112382233 mucin 4 isoform d [Homo sapiens]
Length = 1176
Score = 28.9 bits (63), Expect = 4.9
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 211 FCEDSSSDCDSSYFCFHSARICPGTRLTLQPPSLSPMSRGCSS 253
+CE S C+ CF S PG PP+L+ R C++
Sbjct: 834 YCEGSEDACEEP--CFPSVHCVPGKGCEACPPNLTGDGRHCAA 874
>gi|126032350 protein kinase, DNA-activated, catalytic polypeptide
isoform 2 [Homo sapiens]
Length = 4097
Score = 28.1 bits (61), Expect = 8.4
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 28/126 (22%)
Query: 2 QQLHPLTSLNQLLLRQLPGPLCLLHH--GTQLLQLSLQQVVAPLHDGDVLLQVVVGTDCI 59
+QLH L+ +L P LHH GT+LL L + + +AP GD C+
Sbjct: 1456 KQLHRAGLLHNIL----PSQSTDLHHSVGTELLSL-VYKGIAP---GDE-------RQCL 1500
Query: 60 VQLNLGYLQQALEALDLLLGLGGHAVGVAELDLHLIEVSFHLLLHPQGLVAAACLCVQGG 119
L+L Q A L+L GG L E LLL+P L A+ QG
Sbjct: 1501 PSLDLSCKQLASGLLELAFAFGG-----------LCERLVSLLLNPAVLSTASLGSSQGS 1549
Query: 120 LQRVHH 125
+ H
Sbjct: 1550 VIHFSH 1555
>gi|13654237 protein kinase, DNA-activated, catalytic polypeptide
isoform 1 [Homo sapiens]
Length = 4128
Score = 28.1 bits (61), Expect = 8.4
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 28/126 (22%)
Query: 2 QQLHPLTSLNQLLLRQLPGPLCLLHH--GTQLLQLSLQQVVAPLHDGDVLLQVVVGTDCI 59
+QLH L+ +L P LHH GT+LL L + + +AP GD C+
Sbjct: 1456 KQLHRAGLLHNIL----PSQSTDLHHSVGTELLSL-VYKGIAP---GDE-------RQCL 1500
Query: 60 VQLNLGYLQQALEALDLLLGLGGHAVGVAELDLHLIEVSFHLLLHPQGLVAAACLCVQGG 119
L+L Q A L+L GG L E LLL+P L A+ QG
Sbjct: 1501 PSLDLSCKQLASGLLELAFAFGG-----------LCERLVSLLLNPAVLSTASLGSSQGS 1549
Query: 120 LQRVHH 125
+ H
Sbjct: 1550 VIHFSH 1555
>gi|113430845 PREDICTED: similar to protein kinase, DNA-activated,
catalytic polypeptide [Homo sapiens]
Length = 4096
Score = 28.1 bits (61), Expect = 8.4
Identities = 38/126 (30%), Positives = 51/126 (40%), Gaps = 28/126 (22%)
Query: 2 QQLHPLTSLNQLLLRQLPGPLCLLHH--GTQLLQLSLQQVVAPLHDGDVLLQVVVGTDCI 59
+QLH L+ +L P LHH GT+LL L + + +AP GD C+
Sbjct: 1456 KQLHRAGLLHNIL----PSQSTDLHHSVGTELLSL-VYKGIAP---GDE-------RQCL 1500
Query: 60 VQLNLGYLQQALEALDLLLGLGGHAVGVAELDLHLIEVSFHLLLHPQGLVAAACLCVQGG 119
L+L Q A L+L GG L E LLL+P L A+ QG
Sbjct: 1501 PSLDLSCKQLASGLLELAFAFGG-----------LCERLVSLLLNPAVLSTASLGSSQGS 1549
Query: 120 LQRVHH 125
+ H
Sbjct: 1550 VIHFSH 1555
>gi|73747887 ADAM metallopeptidase domain 12 isoform 2 preproprotein
[Homo sapiens]
Length = 738
Score = 28.1 bits (61), Expect = 8.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 205 LRERASFCEDSSSDCDSSYFCFHSARICP 233
L+ + C DSS+ CD FC ++ CP
Sbjct: 475 LKPAGTACRDSSNSCDLPEFCTGASPHCP 503
>gi|73747885 ADAM metallopeptidase domain 12 isoform 1 preproprotein
[Homo sapiens]
Length = 909
Score = 28.1 bits (61), Expect = 8.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 205 LRERASFCEDSSSDCDSSYFCFHSARICP 233
L+ + C DSS+ CD FC ++ CP
Sbjct: 475 LKPAGTACRDSSNSCDLPEFCTGASPHCP 503
>gi|24415404 MDN1, midasin homolog [Homo sapiens]
Length = 5596
Score = 28.1 bits (61), Expect = 8.4
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 136 LLVLLCQLPLDL-CLDLVELQLGPEDLALLLLSDLLQL-MDSLSAGTQLLSQVGDLLCVG 193
+L L QL LD C LV QL P LL DLL+ +++ AG Q+ + + LCV
Sbjct: 44 VLSTLAQLLLDKDCTVLVGRQLRP------LLLDLLERNAEAIKAGGQINHDLHERLCVS 97
Query: 194 NTAFLSLKSSVLRERASFCEDSS 216
+ + VL + +D+S
Sbjct: 98 MSKLIGNHPDVLPFALRYFKDTS 120
>gi|89242141 colon cancer-associated protein Mic1 [Homo sapiens]
Length = 657
Score = 28.1 bits (61), Expect = 8.4
Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 32 LQLSLQQVVAPLHDG--DVLLQVVVGTDCIVQLNLGYLQQALEALDLLLGLGGH 83
L LSL+ P H D+L ++ D IV++ L Q L AL + G+GGH
Sbjct: 536 LLLSLESFYPPAHQLSLDMLKRLSTANDEIVEVLLSK-HQVLAALRFIRGIGGH 588
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.326 0.142 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,250,446
Number of Sequences: 37866
Number of extensions: 433433
Number of successful extensions: 1515
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1505
Number of HSP's gapped (non-prelim): 23
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.