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Search of human proteins with 239744890
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744890 PREDICTED: hypothetical protein [Homo sapiens]
(124 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744890 PREDICTED: hypothetical protein [Homo sapiens] 272 5e-74
gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens] 33 0.056
gi|223671888 interleukin-1 receptor-associated kinase 4 isoform ... 31 0.28
gi|223671885 interleukin-1 receptor-associated kinase 4 isoform ... 31 0.28
gi|223671883 interleukin-1 receptor-associated kinase 4 isoform ... 31 0.28
gi|166795293 interleukin-1 receptor-associated kinase 4 isoform ... 31 0.28
gi|166795295 interleukin-1 receptor-associated kinase 4 isoform ... 31 0.28
gi|122891864 zinc finger protein, subfamily 1A, 4 [Homo sapiens] 31 0.28
gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens] 30 0.47
gi|93277115 ataxin 7-like 2 [Homo sapiens] 29 1.1
gi|190343021 Sec24-related protein D [Homo sapiens] 29 1.1
gi|188536047 SWI/SNF-related matrix-associated actin-dependent r... 28 1.4
gi|126090663 zinc finger homeodomain 4 [Homo sapiens] 28 1.8
gi|239754487 PREDICTED: hypothetical protein [Homo sapiens] 27 3.1
gi|239749042 PREDICTED: hypothetical protein [Homo sapiens] 27 3.1
gi|239743067 PREDICTED: hypothetical protein [Homo sapiens] 27 3.1
gi|239508713 PREDICTED: hypothetical protein [Homo sapiens] 27 3.1
gi|187281580 meckelin isoform 1 [Homo sapiens] 27 3.1
gi|188595665 FXYD domain-containing ion transport regulator 2 is... 27 3.1
gi|8922188 F-box only protein 6 [Homo sapiens] 27 3.1
gi|239754766 PREDICTED: hypothetical protein [Homo sapiens] 27 4.0
gi|169171033 PREDICTED: hypothetical protein [Homo sapiens] 27 4.0
gi|50658071 phosphodiesterase 4D interacting protein isoform 5 [... 27 4.0
gi|150378543 MYST histone acetyltransferase (monocytic leukemia)... 27 4.0
gi|150378463 MYST histone acetyltransferase (monocytic leukemia)... 27 4.0
gi|150378493 MYST histone acetyltransferase (monocytic leukemia)... 27 4.0
gi|48314820 5-oxoprolinase (ATP-hydrolysing) [Homo sapiens] 27 4.0
gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II, pol... 27 5.2
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 27 5.2
gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo ... 27 5.2
>gi|239744890 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 272 bits (695), Expect = 5e-74
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MQRAGNPVLTLPGMPFGKTSVPEAEGQCLLLPGAQLLSGPQTHATCPGASPNSFVYFPVG 60
MQRAGNPVLTLPGMPFGKTSVPEAEGQCLLLPGAQLLSGPQTHATCPGASPNSFVYFPVG
Sbjct: 1 MQRAGNPVLTLPGMPFGKTSVPEAEGQCLLLPGAQLLSGPQTHATCPGASPNSFVYFPVG 60
Query: 61 NVLIPLGCKDGTTPEGWTVSRCPANICGISSTQQGKRWRQKPLQAPEGTHFPDPVHLPDP 120
NVLIPLGCKDGTTPEGWTVSRCPANICGISSTQQGKRWRQKPLQAPEGTHFPDPVHLPDP
Sbjct: 61 NVLIPLGCKDGTTPEGWTVSRCPANICGISSTQQGKRWRQKPLQAPEGTHFPDPVHLPDP 120
Query: 121 RPPP 124
RPPP
Sbjct: 121 RPPP 124
>gi|55742678 glucocorticoid induced transcript 1 [Homo sapiens]
Length = 547
Score = 33.1 bits (74), Expect = 0.056
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 60 GNVLIPLGCKDGTTPEGWTVSRCPANICGIS--------STQQGKRWRQKPLQAPEGTHF 111
G+ +P+ + + P+ +VSR P N+ GIS GK KPL P+G
Sbjct: 274 GSRSVPMPLSNISVPKS-SVSRVPCNVEGISPELEKVFIKENNGKEEVSKPLDIPDGRRA 332
Query: 112 PDPVH 116
P P H
Sbjct: 333 PLPAH 337
>gi|223671888 interleukin-1 receptor-associated kinase 4 isoform b
[Homo sapiens]
Length = 336
Score = 30.8 bits (68), Expect = 0.28
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 54 FVYFPVGNVLIPLGCKDGTTPEGWTVSRC 82
+VY P G++L L C DGT P W + RC
Sbjct: 138 YVYMPNGSLLDRLSCLDGTPPLSWHM-RC 165
>gi|223671885 interleukin-1 receptor-associated kinase 4 isoform b
[Homo sapiens]
Length = 336
Score = 30.8 bits (68), Expect = 0.28
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 54 FVYFPVGNVLIPLGCKDGTTPEGWTVSRC 82
+VY P G++L L C DGT P W + RC
Sbjct: 138 YVYMPNGSLLDRLSCLDGTPPLSWHM-RC 165
>gi|223671883 interleukin-1 receptor-associated kinase 4 isoform b
[Homo sapiens]
Length = 336
Score = 30.8 bits (68), Expect = 0.28
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 54 FVYFPVGNVLIPLGCKDGTTPEGWTVSRC 82
+VY P G++L L C DGT P W + RC
Sbjct: 138 YVYMPNGSLLDRLSCLDGTPPLSWHM-RC 165
>gi|166795293 interleukin-1 receptor-associated kinase 4 isoform a
[Homo sapiens]
Length = 460
Score = 30.8 bits (68), Expect = 0.28
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 54 FVYFPVGNVLIPLGCKDGTTPEGWTVSRC 82
+VY P G++L L C DGT P W + RC
Sbjct: 262 YVYMPNGSLLDRLSCLDGTPPLSWHM-RC 289
>gi|166795295 interleukin-1 receptor-associated kinase 4 isoform a
[Homo sapiens]
Length = 460
Score = 30.8 bits (68), Expect = 0.28
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 54 FVYFPVGNVLIPLGCKDGTTPEGWTVSRC 82
+VY P G++L L C DGT P W + RC
Sbjct: 262 YVYMPNGSLLDRLSCLDGTPPLSWHM-RC 289
>gi|122891864 zinc finger protein, subfamily 1A, 4 [Homo sapiens]
Length = 585
Score = 30.8 bits (68), Expect = 0.28
Identities = 35/112 (31%), Positives = 42/112 (37%), Gaps = 19/112 (16%)
Query: 11 LPGMPFGKTSVPEAEGQCLLLPGAQLLSGPQTHATCPGASPNSFVYFPVGNVLIPLGCKD 70
LPG S EG L G LL P+ T PGASP++ GC+D
Sbjct: 409 LPGRLELPGSREAGEGPEDLADGGPLLYRPRGPLTDPGASPSN-------------GCQD 455
Query: 71 GTTPEGWTVSRCPANICGISSTQQGKRWRQKPLQAPEGTHFPDPVHLPDPRP 122
T E S + G+ S QG Q P G H P DP+P
Sbjct: 456 STDTE----SNHEDRVAGVVSLPQGPP-PQPPPTIVVGRHSP-AYAKEDPKP 501
>gi|187829730 BCL2 binding component 3 isoform 1 [Homo sapiens]
Length = 261
Score = 30.0 bits (66), Expect = 0.47
Identities = 28/94 (29%), Positives = 37/94 (39%), Gaps = 13/94 (13%)
Query: 31 LPGAQLLSGPQTHATCPGASPNSFVYFPVGNVLIPLGCKDGTTPEGWTVSRCPANICGIS 90
LPGA+ GP+ A P P + +G+VL PL + G P PA C
Sbjct: 44 LPGARRGPGPRRPAPLPARPPGA-----LGSVLRPLRARPGCRPR----RPHPAARCLPL 94
Query: 91 STQQGKRWRQKPLQAPEGTHFPDPVHLPDPRPPP 124
+ R ++P P P P PRP P
Sbjct: 95 RPHRPTRRHRRPGGFPLAWGSPQPA----PRPAP 124
>gi|93277115 ataxin 7-like 2 [Homo sapiens]
Length = 722
Score = 28.9 bits (63), Expect = 1.1
Identities = 29/123 (23%), Positives = 38/123 (30%), Gaps = 4/123 (3%)
Query: 4 AGNPVLTLPGMPFGKTSVPEAEGQCLLLPGAQLLSGPQTHATCPGASPNSFVYFPVGNVL 63
A P L P P + G C LPG L P A+ P N +P G+
Sbjct: 458 AAEPPAHLVNSPLSAPLSPSSTGTCPRLPGPTL--RPACPASMPPTKDNLVPSYPAGSPS 515
Query: 64 IPLGCKDGTTPEG--WTVSRCPANICGISSTQQGKRWRQKPLQAPEGTHFPDPVHLPDPR 121
+ C G S PAN S ++ K + +G P
Sbjct: 516 VAAACSQAECMGGSQAITSPLPANTPSPSFSKLPPSKASKSSKGKDGVEVEAPSRKRKLS 575
Query: 122 PPP 124
P P
Sbjct: 576 PGP 578
>gi|190343021 Sec24-related protein D [Homo sapiens]
Length = 1032
Score = 28.9 bits (63), Expect = 1.1
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 12 PGMPFGKTSV---PEAEGQCLLLPGAQLLSGPQTHATCPGASP 51
P P TS+ P +L PG+Q+L P T PGASP
Sbjct: 143 PPGPLSATSLQTPPRPPQPSILQPGSQVLPPPPTTLNGPGASP 185
>gi|188536047 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin c1 [Homo sapiens]
Length = 1105
Score = 28.5 bits (62), Expect = 1.4
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 12/53 (22%)
Query: 71 GTTPEGWTVSRCPANICGISSTQQGKRWRQKPLQAPEGTHFPDPVHLPDPRPP 123
G TP G + P NI G + PL AP G + P P P P PP
Sbjct: 1047 GPTPPG--MPPMPGNILG----------PRVPLTAPNGMYPPPPQQQPPPPPP 1087
>gi|126090663 zinc finger homeodomain 4 [Homo sapiens]
Length = 3571
Score = 28.1 bits (61), Expect = 1.8
Identities = 13/23 (56%), Positives = 13/23 (56%)
Query: 102 PLQAPEGTHFPDPVHLPDPRPPP 124
PLQAP T P P P P PPP
Sbjct: 1989 PLQAPPPTPPPPPPPPPPPPPPP 2011
>gi|239754487 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 27.3 bits (59), Expect = 3.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 43 HATCPGASPNSFVYFPVGNVLIPLGCKDGTTPEGWTVS 80
H PGA + PVG P+ + GT EGWT++
Sbjct: 384 HLQGPGA------HTPVGTSSAPVPSRPGTRAEGWTMA 415
>gi|239749042 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 27.3 bits (59), Expect = 3.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 43 HATCPGASPNSFVYFPVGNVLIPLGCKDGTTPEGWTVS 80
H PGA + PVG P+ + GT EGWT++
Sbjct: 384 HLQGPGA------HTPVGTSSAPVPSRPGTRAEGWTMA 415
>gi|239743067 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 27.3 bits (59), Expect = 3.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 43 HATCPGASPNSFVYFPVGNVLIPLGCKDGTTPEGWTVS 80
H PGA + PVG P+ + GT EGWT++
Sbjct: 384 HLQGPGA------HTPVGTSSAPVPSRPGTRAEGWTMA 415
>gi|239508713 PREDICTED: hypothetical protein [Homo sapiens]
Length = 424
Score = 27.3 bits (59), Expect = 3.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 6/38 (15%)
Query: 43 HATCPGASPNSFVYFPVGNVLIPLGCKDGTTPEGWTVS 80
H PGA + PVG P+ + GT EGWT++
Sbjct: 384 HLQGPGA------HTPVGTSSAPVPSRPGTRAEGWTMA 415
>gi|187281580 meckelin isoform 1 [Homo sapiens]
Length = 995
Score = 27.3 bits (59), Expect = 3.1
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 21/90 (23%)
Query: 8 VLTLPGMPFGKTSVPEAEG-QCLLLPGAQLLSGPQTHATCPGASPNSFVYFPVGNVLIPL 66
+ L +P G +A G C+ LPG Q++S A P +
Sbjct: 57 ISALSCVPCGANQRQDARGTSCVCLPGFQMISNNGGPAIICKKCPENM------------ 104
Query: 67 GCKDGTTPEGWTVSRCPANICGISSTQQGK 96
G T +GW CP+++ T +GK
Sbjct: 105 ---KGVTEDGWNCISCPSDL-----TAEGK 126
>gi|188595665 FXYD domain-containing ion transport regulator 2
isoform 3 [Homo sapiens]
Length = 145
Score = 27.3 bits (59), Expect = 3.1
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 13 GMPFGKTSVPEAEGQCLLLPGAQLLSGPQTHATCP 47
G P ++PE G LP + LS PQ HA CP
Sbjct: 22 GKPGPLRTLPEPSGP---LPPSSGLSQPQVHALCP 53
>gi|8922188 F-box only protein 6 [Homo sapiens]
Length = 293
Score = 27.3 bits (59), Expect = 3.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 95 GKRWRQKPLQAPEGTHFPDP 114
G RW+ + L GT FPDP
Sbjct: 108 GDRWKVESLPGAHGTDFPDP 127
>gi|239754766 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 26.9 bits (58), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 11 LPGMPFGKTSVPEAEGQCLLLPGAQLLSGPQTHATCPG 48
+PG F ++ + E LL G+ + S P +H+ PG
Sbjct: 31 VPGGSFKRSGPSKMEAMFYLLGGSAVCSSPVSHSLTPG 68
>gi|169171033 PREDICTED: hypothetical protein [Homo sapiens]
Length = 359
Score = 26.9 bits (58), Expect = 4.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 11 LPGMPFGKTSVPEAEGQCLLLPGAQLLSGPQTHATCPG 48
+PG F ++ + E LL G+ + S P +H+ PG
Sbjct: 31 VPGGSFKRSGPSKMEAMFYLLGGSAVCSSPVSHSLTPG 68
>gi|50658071 phosphodiesterase 4D interacting protein isoform 5
[Homo sapiens]
Length = 1132
Score = 26.9 bits (58), Expect = 4.0
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 101 KPLQAPEGTHFPDPV--HLPDPRPPP 124
KP+Q+P G+ P PV LP +P P
Sbjct: 301 KPIQSPRGSRLPIPVKSSLPGAKPGP 326
>gi|150378543 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 26.9 bits (58), Expect = 4.0
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 83 PANICGISSTQQ-------GKRWRQKPLQAPEGTHFPDPVHLPDPRPPP 124
PA C I S Q + +Q P P+ P P P P+PPP
Sbjct: 1626 PAANCSIKSPQSCVVERPPSNQQQQPPPPPPQQPQPPPPQPQPAPQPPP 1674
>gi|150378463 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 26.9 bits (58), Expect = 4.0
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 83 PANICGISSTQQ-------GKRWRQKPLQAPEGTHFPDPVHLPDPRPPP 124
PA C I S Q + +Q P P+ P P P P+PPP
Sbjct: 1626 PAANCSIKSPQSCVVERPPSNQQQQPPPPPPQQPQPPPPQPQPAPQPPP 1674
>gi|150378493 MYST histone acetyltransferase (monocytic leukemia) 3
[Homo sapiens]
Length = 2004
Score = 26.9 bits (58), Expect = 4.0
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 83 PANICGISSTQQ-------GKRWRQKPLQAPEGTHFPDPVHLPDPRPPP 124
PA C I S Q + +Q P P+ P P P P+PPP
Sbjct: 1626 PAANCSIKSPQSCVVERPPSNQQQQPPPPPPQQPQPPPPQPQPAPQPPP 1674
>gi|48314820 5-oxoprolinase (ATP-hydrolysing) [Homo sapiens]
Length = 1288
Score = 26.9 bits (58), Expect = 4.0
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 17 GKTSVPEAEGQ--CLLLPGAQLLSGPQTHATCPGASPNSFVYFPVGNV 62
GKTSV G CL PG P+ A PG+ P + + G+V
Sbjct: 1231 GKTSVTVYPGDVFCLHTPGGGGYGDPEDPAPPPGSPPQALAFPEHGSV 1278
>gi|67188550 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1b
[Homo sapiens]
Length = 867
Score = 26.6 bits (57), Expect = 5.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 94 QGKRWRQKPLQAPEG 108
+GKR RQKP APEG
Sbjct: 479 EGKRGRQKPKAAPEG 493
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 26.6 bits (57), Expect = 5.2
Identities = 11/15 (73%), Positives = 12/15 (80%)
Query: 94 QGKRWRQKPLQAPEG 108
+GKR RQKP APEG
Sbjct: 479 EGKRGRQKPKAAPEG 493
>gi|239749209 PREDICTED: hypothetical protein XP_002346954 [Homo
sapiens]
Length = 262
Score = 26.6 bits (57), Expect = 5.2
Identities = 35/117 (29%), Positives = 43/117 (36%), Gaps = 21/117 (17%)
Query: 22 PEAEGQC-----LLLPGAQLLSGPQTHATCPGAS-PNSFVYF---------PVGNVLIPL 66
P G C LLPG L P+ A G P S V P G+ L L
Sbjct: 117 PHDRGACGNTARRLLPGGGRLRSPRDPAWESGRRRPASGVRVESGVLPVPGPRGSRLSKL 176
Query: 67 GCKDGTTPEGWTV--SRCPANICGISSTQQGKRWRQKPLQAPEGTHFPDPVHLPDPR 121
G +P G V +R PA + S + RWR+K P + P LP R
Sbjct: 177 GGPHARSPHGNRVPQARSPA----LRSLETAARWRKKQPLGPRRLGWATPNPLPGHR 229
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.139 0.465
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,579,504
Number of Sequences: 37866
Number of extensions: 443054
Number of successful extensions: 1536
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1481
Number of HSP's gapped (non-prelim): 95
length of query: 124
length of database: 18,247,518
effective HSP length: 89
effective length of query: 35
effective length of database: 14,877,444
effective search space: 520710540
effective search space used: 520710540
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.