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Search of human proteins with 239744773
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744773 PREDICTED: hypothetical protein XP_002343267 [Homo
sapiens]
(187 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755957 PREDICTED: hypothetical protein [Homo sapiens] 372 e-103
gi|239750477 PREDICTED: hypothetical protein [Homo sapiens] 372 e-103
gi|239744773 PREDICTED: hypothetical protein XP_002343267 [Homo ... 372 e-103
gi|239757116 PREDICTED: hypothetical protein [Homo sapiens] 32 0.42
gi|239751619 PREDICTED: hypothetical protein [Homo sapiens] 32 0.42
gi|169213518 PREDICTED: hypothetical protein [Homo sapiens] 32 0.42
gi|157743284 ankyrin repeat domain 52 [Homo sapiens] 31 0.54
gi|221316609 sperm-associated cation channel 1 [Homo sapiens] 30 1.2
gi|11386193 zinc finger protein 197 isoform 1 [Homo sapiens] 29 2.1
gi|68800230 zinc finger protein 197 isoform 2 [Homo sapiens] 29 2.1
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens] 29 2.7
gi|239756833 PREDICTED: hypothetical protein [Homo sapiens] 28 3.5
gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo ... 28 3.5
gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo ... 28 3.5
gi|110825984 malignant fibrous histiocytoma amplified sequence 1... 28 6.0
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens] 27 7.9
>gi|239755957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 187
Score = 372 bits (954), Expect = e-103
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD 60
MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD
Sbjct: 1 MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD 60
Query: 61 LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP 120
LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP
Sbjct: 61 LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP 120
Query: 121 VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG 180
VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG
Sbjct: 121 VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG 180
Query: 181 KVAVDLF 187
KVAVDLF
Sbjct: 181 KVAVDLF 187
>gi|239750477 PREDICTED: hypothetical protein [Homo sapiens]
Length = 187
Score = 372 bits (954), Expect = e-103
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD 60
MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD
Sbjct: 1 MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD 60
Query: 61 LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP 120
LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP
Sbjct: 61 LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP 120
Query: 121 VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG 180
VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG
Sbjct: 121 VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG 180
Query: 181 KVAVDLF 187
KVAVDLF
Sbjct: 181 KVAVDLF 187
>gi|239744773 PREDICTED: hypothetical protein XP_002343267 [Homo
sapiens]
Length = 187
Score = 372 bits (954), Expect = e-103
Identities = 187/187 (100%), Positives = 187/187 (100%)
Query: 1 MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD 60
MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD
Sbjct: 1 MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD 60
Query: 61 LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP 120
LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP
Sbjct: 61 LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP 120
Query: 121 VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG 180
VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG
Sbjct: 121 VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG 180
Query: 181 KVAVDLF 187
KVAVDLF
Sbjct: 181 KVAVDLF 187
>gi|239757116 PREDICTED: hypothetical protein [Homo sapiens]
Length = 497
Score = 31.6 bits (70), Expect = 0.42
Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 32 LLCAPAALQHALR--GITLHNGHHQADHLPDLMHHEALALHPDHRKLQALPHKGFLAVHL 89
LL A L L G+ H G Q H + H LA ++LQ L G AV
Sbjct: 381 LLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLA---PQQQLQDLQAAGLGAVMQ 437
Query: 90 QDVAAGTG--ILRPLLRGEIVEVVRALVAGQEPVDLLQRLGAQAVGLILNVPVLVRKG 145
VA G L LL+ ++ ALVA + +G VGL+L V V G
Sbjct: 438 GRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHLQVGLVLADQVAVAGG 495
>gi|239751619 PREDICTED: hypothetical protein [Homo sapiens]
Length = 497
Score = 31.6 bits (70), Expect = 0.42
Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 32 LLCAPAALQHALR--GITLHNGHHQADHLPDLMHHEALALHPDHRKLQALPHKGFLAVHL 89
LL A L L G+ H G Q H + H LA ++LQ L G AV
Sbjct: 381 LLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLA---PQQQLQDLQAAGLGAVMQ 437
Query: 90 QDVAAGTG--ILRPLLRGEIVEVVRALVAGQEPVDLLQRLGAQAVGLILNVPVLVRKG 145
VA G L LL+ ++ ALVA + +G VGL+L V V G
Sbjct: 438 GRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHLQVGLVLADQVAVAGG 495
>gi|169213518 PREDICTED: hypothetical protein [Homo sapiens]
Length = 497
Score = 31.6 bits (70), Expect = 0.42
Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 7/118 (5%)
Query: 32 LLCAPAALQHALR--GITLHNGHHQADHLPDLMHHEALALHPDHRKLQALPHKGFLAVHL 89
LL A L L G+ H G Q H + H LA ++LQ L G AV
Sbjct: 381 LLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLA---PQQQLQDLQAAGLGAVMQ 437
Query: 90 QDVAAGTG--ILRPLLRGEIVEVVRALVAGQEPVDLLQRLGAQAVGLILNVPVLVRKG 145
VA G L LL+ ++ ALVA + +G VGL+L V V G
Sbjct: 438 GRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHLQVGLVLADQVAVAGG 495
>gi|157743284 ankyrin repeat domain 52 [Homo sapiens]
Length = 1076
Score = 31.2 bits (69), Expect = 0.54
Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 13/96 (13%)
Query: 17 PLQDQAESGRLGHVHLLCAPAALQHA--LRGIT-LHNGHHQA--DHLPDLMHHEALALHP 71
PL +G + VHLL + A LRG T LH G D L L+ H+A L
Sbjct: 691 PLMLAIMNGHVDCVHLLLEKGSTADAADLRGRTALHRGAVTGCEDCLAALLDHDAFVLCR 750
Query: 72 DHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEI 107
D KG +HL T +LR LL+ +
Sbjct: 751 DF--------KGRTPIHLASACGHTAVLRTLLQAAL 778
>gi|221316609 sperm-associated cation channel 1 [Homo sapiens]
Length = 780
Score = 30.0 bits (66), Expect = 1.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 44 RGIT-LHNGHHQADHLPDLMHHEALALHPDHRKLQALPHKGF 84
RGI+ H+ +HQ DH P HH H H Q H+ +
Sbjct: 258 RGISDYHSEYHQGDHHPSEYHHGDHPHHTQHHYHQTHRHRDY 299
>gi|11386193 zinc finger protein 197 isoform 1 [Homo sapiens]
Length = 1029
Score = 29.3 bits (64), Expect = 2.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 116 AGQEPVDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGIT 158
+G+E V L++ L G + VPVLV+ Q+V PG T
Sbjct: 109 SGEEAVALVEELQKDLDGPAIQVPVLVKDQDTLQKVVSAPGTT 151
>gi|68800230 zinc finger protein 197 isoform 2 [Homo sapiens]
Length = 267
Score = 29.3 bits (64), Expect = 2.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Query: 116 AGQEPVDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGIT 158
+G+E V L++ L G + VPVLV+ Q+V PG T
Sbjct: 109 SGEEAVALVEELQKDLDGPAIQVPVLVKDQDTLQKVVSAPGTT 151
>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
Length = 1378
Score = 28.9 bits (63), Expect = 2.7
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 48 LHNGHHQADHLPDL-MHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTG---ILRPLL 103
L + A+HL L + + AL R LQ+LP L + L VAAG G ++ P+
Sbjct: 1181 LGSAFQDAEHLKTLSLSYNALGAPALARTLQSLPAGTLLHLELSSVAAGKGDSDLMEPVF 1240
Query: 104 R 104
R
Sbjct: 1241 R 1241
>gi|239756833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 28.5 bits (62), Expect = 3.5
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 93 AAGTGILRPLLRGEI-VEVVRALVAGQEPVDLLQRLG-----AQAVGLILNVPVLVRKGK 146
AA GI RG V V L QEPV +RL A A+ L+L V VR+G+
Sbjct: 129 AAAVGIGLGRGRGAAAVGVAEGLAVAQEPVQPQRRLQVARALAPALSLVLLQSVPVRRGQ 188
Query: 147 RGQQVAIGPGITSVLGVKPARDPLQLTQNP 176
R Q + +L ++P Q Q P
Sbjct: 189 RHQVLGREAPEAVLLVLRPGAAQQQPQQPP 218
>gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo
sapiens]
Length = 346
Score = 28.5 bits (62), Expect = 3.5
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 93 AAGTGILRPLLRGEI-VEVVRALVAGQEPVDLLQRLG-----AQAVGLILNVPVLVRKGK 146
AA GI RG V V L QEPV +RL A A+ L+L V VR+G+
Sbjct: 194 AAAVGIGLGRGRGAAAVGVAEGLAVAQEPVQPQRRLQVARALAPALSLVLLQSVPVRRGQ 253
Query: 147 RGQQVAIGPGITSVLGVKPARDPLQLTQNP 176
R Q + +L ++P Q Q P
Sbjct: 254 RHQVLGREAPEAVLLVLRPGAAQQQPQQPP 283
>gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo
sapiens]
Length = 346
Score = 28.5 bits (62), Expect = 3.5
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 93 AAGTGILRPLLRGEI-VEVVRALVAGQEPVDLLQRLG-----AQAVGLILNVPVLVRKGK 146
AA GI RG V V L QEPV +RL A A+ L+L V VR+G+
Sbjct: 194 AAAVGIGLGRGRGAAAVGVAEGLAVAQEPVQPQRRLQVARALAPALSLVLLQSVPVRRGQ 253
Query: 147 RGQQVAIGPGITSVLGVKPARDPLQLTQNP 176
R Q + +L ++P Q Q P
Sbjct: 254 RHQVLGREAPEAVLLVLRPGAAQQQPQQPP 283
>gi|110825984 malignant fibrous histiocytoma amplified sequence 1
[Homo sapiens]
Length = 1052
Score = 27.7 bits (60), Expect = 6.0
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 27 LGHVHLLCAPAALQHALRGITLHNGHHQADHLPDLMH--HEALALHPDHRKLQALPHKGF 84
L H L PA L L ++ HLPD + L DH +L A P +
Sbjct: 142 LSHNQLPALPAQLGALAHLEELDVSFNRLAHLPDSLSCLSRLRTLDVDHNQLTAFPRQLL 201
Query: 85 LAVHLQDVAAGTGILRPLLRGEIVEVVRAL 114
V L+++ + LR L E + +RAL
Sbjct: 202 QLVALEELDVSSNRLRGL--PEDISALRAL 229
>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 743
Score = 27.3 bits (59), Expect = 7.9
Identities = 45/186 (24%), Positives = 70/186 (37%), Gaps = 39/186 (20%)
Query: 10 VVLLEVHPL--------QDQAESGRL---GHVHLLCAPAALQHALRGITLHNGHHQADHL 58
VVL + HPL + +A S L H L A +RG+ +A +
Sbjct: 371 VVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRV 430
Query: 59 PDLMHHEALAL----HPDH----RKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEV 110
P +H + AL DH + L+ KG ++ + Q+ L LL G +VE
Sbjct: 431 PSPVHKQVAALPLLPQADHLLDGQGLREGKRKGSMSPNFQEAPCSKPQLTQLLTGLVVEA 490
Query: 111 VRALVAGQEPVDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPL 170
RA P+D ++P L R G + I + +++ P L
Sbjct: 491 HRA------PLD-------------PSIPYLCRHGDSTTSLIISYALVTIMDF-PIPQGL 530
Query: 171 QLTQNP 176
LT +P
Sbjct: 531 ALTTHP 536
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.140 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,119,080
Number of Sequences: 37866
Number of extensions: 318078
Number of successful extensions: 695
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 687
Number of HSP's gapped (non-prelim): 18
length of query: 187
length of database: 18,247,518
effective HSP length: 96
effective length of query: 91
effective length of database: 14,612,382
effective search space: 1329726762
effective search space used: 1329726762
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.