Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239744773

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744773 PREDICTED: hypothetical protein XP_002343267 [Homo
sapiens]
         (187 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239755957 PREDICTED: hypothetical protein [Homo sapiens]           372   e-103
gi|239750477 PREDICTED: hypothetical protein [Homo sapiens]           372   e-103
gi|239744773 PREDICTED: hypothetical protein XP_002343267 [Homo ...   372   e-103
gi|239757116 PREDICTED: hypothetical protein [Homo sapiens]            32   0.42 
gi|239751619 PREDICTED: hypothetical protein [Homo sapiens]            32   0.42 
gi|169213518 PREDICTED: hypothetical protein [Homo sapiens]            32   0.42 
gi|157743284 ankyrin repeat domain 52 [Homo sapiens]                   31   0.54 
gi|221316609 sperm-associated cation channel 1 [Homo sapiens]          30   1.2  
gi|11386193 zinc finger protein 197 isoform 1 [Homo sapiens]           29   2.1  
gi|68800230 zinc finger protein 197 isoform 2 [Homo sapiens]           29   2.1  
gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]        29   2.7  
gi|239756833 PREDICTED: hypothetical protein [Homo sapiens]            28   3.5  
gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo ...    28   3.5  
gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo ...    28   3.5  
gi|110825984 malignant fibrous histiocytoma amplified sequence 1...    28   6.0  
gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]            27   7.9  

>gi|239755957 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 187

 Score =  372 bits (954), Expect = e-103
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD 60
           MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD
Sbjct: 1   MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD 60

Query: 61  LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP 120
           LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP
Sbjct: 61  LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP 120

Query: 121 VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG 180
           VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG
Sbjct: 121 VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG 180

Query: 181 KVAVDLF 187
           KVAVDLF
Sbjct: 181 KVAVDLF 187


>gi|239750477 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 187

 Score =  372 bits (954), Expect = e-103
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD 60
           MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD
Sbjct: 1   MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD 60

Query: 61  LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP 120
           LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP
Sbjct: 61  LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP 120

Query: 121 VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG 180
           VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG
Sbjct: 121 VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG 180

Query: 181 KVAVDLF 187
           KVAVDLF
Sbjct: 181 KVAVDLF 187


>gi|239744773 PREDICTED: hypothetical protein XP_002343267 [Homo
           sapiens]
          Length = 187

 Score =  372 bits (954), Expect = e-103
 Identities = 187/187 (100%), Positives = 187/187 (100%)

Query: 1   MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD 60
           MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD
Sbjct: 1   MQPIVAKALVVLLEVHPLQDQAESGRLGHVHLLCAPAALQHALRGITLHNGHHQADHLPD 60

Query: 61  LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP 120
           LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP
Sbjct: 61  LMHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEVVRALVAGQEP 120

Query: 121 VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG 180
           VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG
Sbjct: 121 VDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPLQLTQNPNVRG 180

Query: 181 KVAVDLF 187
           KVAVDLF
Sbjct: 181 KVAVDLF 187


>gi|239757116 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 497

 Score = 31.6 bits (70), Expect = 0.42
 Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 32  LLCAPAALQHALR--GITLHNGHHQADHLPDLMHHEALALHPDHRKLQALPHKGFLAVHL 89
           LL A   L   L   G+  H G  Q  H   +  H  LA     ++LQ L   G  AV  
Sbjct: 381 LLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLA---PQQQLQDLQAAGLGAVMQ 437

Query: 90  QDVAAGTG--ILRPLLRGEIVEVVRALVAGQEPVDLLQRLGAQAVGLILNVPVLVRKG 145
             VA G     L  LL+    ++  ALVA      +   +G   VGL+L   V V  G
Sbjct: 438 GRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHLQVGLVLADQVAVAGG 495


>gi|239751619 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 497

 Score = 31.6 bits (70), Expect = 0.42
 Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 32  LLCAPAALQHALR--GITLHNGHHQADHLPDLMHHEALALHPDHRKLQALPHKGFLAVHL 89
           LL A   L   L   G+  H G  Q  H   +  H  LA     ++LQ L   G  AV  
Sbjct: 381 LLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLA---PQQQLQDLQAAGLGAVMQ 437

Query: 90  QDVAAGTG--ILRPLLRGEIVEVVRALVAGQEPVDLLQRLGAQAVGLILNVPVLVRKG 145
             VA G     L  LL+    ++  ALVA      +   +G   VGL+L   V V  G
Sbjct: 438 GRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHLQVGLVLADQVAVAGG 495


>gi|169213518 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 497

 Score = 31.6 bits (70), Expect = 0.42
 Identities = 37/118 (31%), Positives = 47/118 (39%), Gaps = 7/118 (5%)

Query: 32  LLCAPAALQHALR--GITLHNGHHQADHLPDLMHHEALALHPDHRKLQALPHKGFLAVHL 89
           LL A   L   L   G+  H G  Q  H   +  H  LA     ++LQ L   G  AV  
Sbjct: 381 LLLAGLLLDEVLHDVGVARHAGREQRGHAVAVTFHAGLA---PQQQLQDLQAAGLGAVMQ 437

Query: 90  QDVAAGTG--ILRPLLRGEIVEVVRALVAGQEPVDLLQRLGAQAVGLILNVPVLVRKG 145
             VA G     L  LL+    ++  ALVA      +   +G   VGL+L   V V  G
Sbjct: 438 GRVALGAAPVHLGALLQQVAGDLTVALVARDHEARVAVPVGHLQVGLVLADQVAVAGG 495


>gi|157743284 ankyrin repeat domain 52 [Homo sapiens]
          Length = 1076

 Score = 31.2 bits (69), Expect = 0.54
 Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 17  PLQDQAESGRLGHVHLLCAPAALQHA--LRGIT-LHNGHHQA--DHLPDLMHHEALALHP 71
           PL     +G +  VHLL    +   A  LRG T LH G      D L  L+ H+A  L  
Sbjct: 691 PLMLAIMNGHVDCVHLLLEKGSTADAADLRGRTALHRGAVTGCEDCLAALLDHDAFVLCR 750

Query: 72  DHRKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEI 107
           D         KG   +HL      T +LR LL+  +
Sbjct: 751 DF--------KGRTPIHLASACGHTAVLRTLLQAAL 778


>gi|221316609 sperm-associated cation channel 1 [Homo sapiens]
          Length = 780

 Score = 30.0 bits (66), Expect = 1.2
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 44  RGIT-LHNGHHQADHLPDLMHHEALALHPDHRKLQALPHKGF 84
           RGI+  H+ +HQ DH P   HH     H  H   Q   H+ +
Sbjct: 258 RGISDYHSEYHQGDHHPSEYHHGDHPHHTQHHYHQTHRHRDY 299


>gi|11386193 zinc finger protein 197 isoform 1 [Homo sapiens]
          Length = 1029

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 116 AGQEPVDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGIT 158
           +G+E V L++ L     G  + VPVLV+     Q+V   PG T
Sbjct: 109 SGEEAVALVEELQKDLDGPAIQVPVLVKDQDTLQKVVSAPGTT 151


>gi|68800230 zinc finger protein 197 isoform 2 [Homo sapiens]
          Length = 267

 Score = 29.3 bits (64), Expect = 2.1
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 116 AGQEPVDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGIT 158
           +G+E V L++ L     G  + VPVLV+     Q+V   PG T
Sbjct: 109 SGEEAVALVEELQKDLDGPAIQVPVLVKDQDTLQKVVSAPGTT 151


>gi|187608777 NF-kappa-B inhibitor-like protein 2 [Homo sapiens]
          Length = 1378

 Score = 28.9 bits (63), Expect = 2.7
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 48   LHNGHHQADHLPDL-MHHEALALHPDHRKLQALPHKGFLAVHLQDVAAGTG---ILRPLL 103
            L +    A+HL  L + + AL      R LQ+LP    L + L  VAAG G   ++ P+ 
Sbjct: 1181 LGSAFQDAEHLKTLSLSYNALGAPALARTLQSLPAGTLLHLELSSVAAGKGDSDLMEPVF 1240

Query: 104  R 104
            R
Sbjct: 1241 R 1241


>gi|239756833 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 281

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 93  AAGTGILRPLLRGEI-VEVVRALVAGQEPVDLLQRLG-----AQAVGLILNVPVLVRKGK 146
           AA  GI     RG   V V   L   QEPV   +RL      A A+ L+L   V VR+G+
Sbjct: 129 AAAVGIGLGRGRGAAAVGVAEGLAVAQEPVQPQRRLQVARALAPALSLVLLQSVPVRRGQ 188

Query: 147 RGQQVAIGPGITSVLGVKPARDPLQLTQNP 176
           R Q +        +L ++P     Q  Q P
Sbjct: 189 RHQVLGREAPEAVLLVLRPGAAQQQPQQPP 218


>gi|239751318 PREDICTED: hypothetical protein XP_002347804 [Homo
           sapiens]
          Length = 346

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 93  AAGTGILRPLLRGEI-VEVVRALVAGQEPVDLLQRLG-----AQAVGLILNVPVLVRKGK 146
           AA  GI     RG   V V   L   QEPV   +RL      A A+ L+L   V VR+G+
Sbjct: 194 AAAVGIGLGRGRGAAAVGVAEGLAVAQEPVQPQRRLQVARALAPALSLVLLQSVPVRRGQ 253

Query: 147 RGQQVAIGPGITSVLGVKPARDPLQLTQNP 176
           R Q +        +L ++P     Q  Q P
Sbjct: 254 RHQVLGREAPEAVLLVLRPGAAQQQPQQPP 283


>gi|239745817 PREDICTED: hypothetical protein XP_002343597 [Homo
           sapiens]
          Length = 346

 Score = 28.5 bits (62), Expect = 3.5
 Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 6/90 (6%)

Query: 93  AAGTGILRPLLRGEI-VEVVRALVAGQEPVDLLQRLG-----AQAVGLILNVPVLVRKGK 146
           AA  GI     RG   V V   L   QEPV   +RL      A A+ L+L   V VR+G+
Sbjct: 194 AAAVGIGLGRGRGAAAVGVAEGLAVAQEPVQPQRRLQVARALAPALSLVLLQSVPVRRGQ 253

Query: 147 RGQQVAIGPGITSVLGVKPARDPLQLTQNP 176
           R Q +        +L ++P     Q  Q P
Sbjct: 254 RHQVLGREAPEAVLLVLRPGAAQQQPQQPP 283


>gi|110825984 malignant fibrous histiocytoma amplified sequence 1
           [Homo sapiens]
          Length = 1052

 Score = 27.7 bits (60), Expect = 6.0
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 27  LGHVHLLCAPAALQHALRGITLHNGHHQADHLPDLMH--HEALALHPDHRKLQALPHKGF 84
           L H  L   PA L        L    ++  HLPD +        L  DH +L A P +  
Sbjct: 142 LSHNQLPALPAQLGALAHLEELDVSFNRLAHLPDSLSCLSRLRTLDVDHNQLTAFPRQLL 201

Query: 85  LAVHLQDVAAGTGILRPLLRGEIVEVVRAL 114
             V L+++   +  LR L   E +  +RAL
Sbjct: 202 QLVALEELDVSSNRLRGL--PEDISALRAL 229


>gi|239756839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 743

 Score = 27.3 bits (59), Expect = 7.9
 Identities = 45/186 (24%), Positives = 70/186 (37%), Gaps = 39/186 (20%)

Query: 10  VVLLEVHPL--------QDQAESGRL---GHVHLLCAPAALQHALRGITLHNGHHQADHL 58
           VVL + HPL        + +A S  L      H L   A     +RG+       +A  +
Sbjct: 371 VVLDQAHPLAFWSLRLWEQEAGSEALRGSSAPHPLVPGAVGAEGVRGLWEQEVGSKALRV 430

Query: 59  PDLMHHEALAL----HPDH----RKLQALPHKGFLAVHLQDVAAGTGILRPLLRGEIVEV 110
           P  +H +  AL      DH    + L+    KG ++ + Q+       L  LL G +VE 
Sbjct: 431 PSPVHKQVAALPLLPQADHLLDGQGLREGKRKGSMSPNFQEAPCSKPQLTQLLTGLVVEA 490

Query: 111 VRALVAGQEPVDLLQRLGAQAVGLILNVPVLVRKGKRGQQVAIGPGITSVLGVKPARDPL 170
            RA      P+D              ++P L R G     + I   + +++   P    L
Sbjct: 491 HRA------PLD-------------PSIPYLCRHGDSTTSLIISYALVTIMDF-PIPQGL 530

Query: 171 QLTQNP 176
            LT +P
Sbjct: 531 ALTTHP 536


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.323    0.140    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,119,080
Number of Sequences: 37866
Number of extensions: 318078
Number of successful extensions: 695
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 687
Number of HSP's gapped (non-prelim): 18
length of query: 187
length of database: 18,247,518
effective HSP length: 96
effective length of query: 91
effective length of database: 14,612,382
effective search space: 1329726762
effective search space used: 1329726762
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press