Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239744731
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744731 PREDICTED: hypothetical protein XP_002343256 [Homo
sapiens]
(290 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239750429 PREDICTED: hypothetical protein XP_002347393 [Homo ... 593 e-170
gi|239744731 PREDICTED: hypothetical protein XP_002343256 [Homo ... 593 e-170
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 30 1.9
gi|239752280 PREDICTED: similar to family with sequence similari... 29 4.2
gi|55743118 RAB3 GTPase-activating protein [Homo sapiens] 29 4.2
gi|210032463 family with sequence similarity 48, member B2 [Homo... 29 4.2
gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens] 29 5.5
gi|148539554 indoleamine-pyrrole 2,3 dioxygenase-like 1 [Homo sa... 29 5.5
gi|23821023 interleukin 4 induced 1 isoform 1 precursor [Homo sa... 29 5.5
gi|27477089 interleukin 4 induced 1 isoform 2 [Homo sapiens] 29 5.5
gi|49087132 sal-like 2 [Homo sapiens] 29 5.5
gi|239755899 PREDICTED: hypothetical protein [Homo sapiens] 28 7.2
gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo ... 28 7.2
gi|213512168 hypothetical protein LOC259308 [Homo sapiens] 28 7.2
gi|19924161 RPB5-mediating protein isoform b [Homo sapiens] 28 7.2
gi|19924159 RPB5-mediating protein isoform a [Homo sapiens] 28 7.2
gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens] 28 9.4
>gi|239750429 PREDICTED: hypothetical protein XP_002347393 [Homo
sapiens]
Length = 290
Score = 593 bits (1530), Expect = e-170
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 MCRTCWYQCFTSRIRLFSLVGREMMKSRCLRQGTSPRASKAGSTSKSTLWSSIVWDVNGI 60
MCRTCWYQCFTSRIRLFSLVGREMMKSRCLRQGTSPRASKAGSTSKSTLWSSIVWDVNGI
Sbjct: 1 MCRTCWYQCFTSRIRLFSLVGREMMKSRCLRQGTSPRASKAGSTSKSTLWSSIVWDVNGI 60
Query: 61 NGLVHLGQELAVGLEKFTDELVKVPSWGLKAGLHPQRCCFLGQQLPATVAHVPGGISGVQ 120
NGLVHLGQELAVGLEKFTDELVKVPSWGLKAGLHPQRCCFLGQQLPATVAHVPGGISGVQ
Sbjct: 61 NGLVHLGQELAVGLEKFTDELVKVPSWGLKAGLHPQRCCFLGQQLPATVAHVPGGISGVQ 120
Query: 121 DQGSGGTAGSAIVDRPVDTELLMLLHEPQHRPEALGHVETILPAALLPGKDVVASWEEPG 180
DQGSGGTAGSAIVDRPVDTELLMLLHEPQHRPEALGHVETILPAALLPGKDVVASWEEPG
Sbjct: 121 DQGSGGTAGSAIVDRPVDTELLMLLHEPQHRPEALGHVETILPAALLPGKDVVASWEEPG 180
Query: 181 ATHLAVPVLHQQNQVLQLDRANVHEVPPQLCEAGLMLALLAATGEEPRVDLGIWFGARTE 240
ATHLAVPVLHQQNQVLQLDRANVHEVPPQLCEAGLMLALLAATGEEPRVDLGIWFGARTE
Sbjct: 181 ATHLAVPVLHQQNQVLQLDRANVHEVPPQLCEAGLMLALLAATGEEPRVDLGIWFGARTE 240
Query: 241 LPYSIEGRQQANIRPALQGCGHQLELQSLRHILLRKLKAQAGHLVLPPGF 290
LPYSIEGRQQANIRPALQGCGHQLELQSLRHILLRKLKAQAGHLVLPPGF
Sbjct: 241 LPYSIEGRQQANIRPALQGCGHQLELQSLRHILLRKLKAQAGHLVLPPGF 290
>gi|239744731 PREDICTED: hypothetical protein XP_002343256 [Homo
sapiens]
Length = 290
Score = 593 bits (1530), Expect = e-170
Identities = 290/290 (100%), Positives = 290/290 (100%)
Query: 1 MCRTCWYQCFTSRIRLFSLVGREMMKSRCLRQGTSPRASKAGSTSKSTLWSSIVWDVNGI 60
MCRTCWYQCFTSRIRLFSLVGREMMKSRCLRQGTSPRASKAGSTSKSTLWSSIVWDVNGI
Sbjct: 1 MCRTCWYQCFTSRIRLFSLVGREMMKSRCLRQGTSPRASKAGSTSKSTLWSSIVWDVNGI 60
Query: 61 NGLVHLGQELAVGLEKFTDELVKVPSWGLKAGLHPQRCCFLGQQLPATVAHVPGGISGVQ 120
NGLVHLGQELAVGLEKFTDELVKVPSWGLKAGLHPQRCCFLGQQLPATVAHVPGGISGVQ
Sbjct: 61 NGLVHLGQELAVGLEKFTDELVKVPSWGLKAGLHPQRCCFLGQQLPATVAHVPGGISGVQ 120
Query: 121 DQGSGGTAGSAIVDRPVDTELLMLLHEPQHRPEALGHVETILPAALLPGKDVVASWEEPG 180
DQGSGGTAGSAIVDRPVDTELLMLLHEPQHRPEALGHVETILPAALLPGKDVVASWEEPG
Sbjct: 121 DQGSGGTAGSAIVDRPVDTELLMLLHEPQHRPEALGHVETILPAALLPGKDVVASWEEPG 180
Query: 181 ATHLAVPVLHQQNQVLQLDRANVHEVPPQLCEAGLMLALLAATGEEPRVDLGIWFGARTE 240
ATHLAVPVLHQQNQVLQLDRANVHEVPPQLCEAGLMLALLAATGEEPRVDLGIWFGARTE
Sbjct: 181 ATHLAVPVLHQQNQVLQLDRANVHEVPPQLCEAGLMLALLAATGEEPRVDLGIWFGARTE 240
Query: 241 LPYSIEGRQQANIRPALQGCGHQLELQSLRHILLRKLKAQAGHLVLPPGF 290
LPYSIEGRQQANIRPALQGCGHQLELQSLRHILLRKLKAQAGHLVLPPGF
Sbjct: 241 LPYSIEGRQQANIRPALQGCGHQLELQSLRHILLRKLKAQAGHLVLPPGF 290
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 30.4 bits (67), Expect = 1.9
Identities = 45/176 (25%), Positives = 62/176 (35%), Gaps = 13/176 (7%)
Query: 26 KSRCLR---QGTSPRASKAGSTSKSTLWSSIVWDVNGINGLVHLGQELAVGLEKFTDELV 82
K C+R QG PR K I G G G +V L + +
Sbjct: 4 KPGCVRVRVQGRRPRFIPGEKGEKRRTKQIIAAQAGGEGGRAQPGLPCSVDLATGLEGPL 63
Query: 83 KVPSWGLKAGLHPQRCCFLGQQLPAT---VAHVPGGISGVQDQGSGGTAGSAIVDRPVDT 139
P+ L G P GQ L A V H+PGG V D G + T
Sbjct: 64 GGPAVDLDVGFSPGDD-IAGQSLGAAGGQVVHLPGGQLAVPDVEVGQLTHKCLGGIKPTT 122
Query: 140 ELLMLLHEPQHRPEALGHV-ETILPAALLPGKDVVASWEEP---GATHLAVPVLHQ 191
+ +LL + QH G + +L A L + ++ +P G + P LHQ
Sbjct: 123 QSYLLLAQHQHALGLDGVIGRQVLATATL--RAILVGLPDPVPGGPVYTTSPSLHQ 176
>gi|239752280 PREDICTED: similar to family with sequence similarity
48, member B2 [Homo sapiens]
Length = 779
Score = 29.3 bits (64), Expect = 4.2
Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 82 VKVPSWGLKA--------GLHPQRCCFLGQQLPATVAHVPGGISGVQDQGSGG 126
V+ S GLKA G C F Q P + A P GISG Q SGG
Sbjct: 528 VRTGSTGLKATNVEGPVRGAQVLGCSFKPVQAPGSGAPAPAGISGSGLQSSGG 580
>gi|55743118 RAB3 GTPase-activating protein [Homo sapiens]
Length = 981
Score = 29.3 bits (64), Expect = 4.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 59 GINGLVHLGQELAVGLEKFTDELVKVPSWGLKAGLHPQRCCFLGQQL 105
G+ G+ HL QE + + + +P GL +G RCC L Q+L
Sbjct: 473 GLKGVAHLWQEFVLEMRFRWENNFLIP--GLASGPPDLRCCLLHQKL 517
>gi|210032463 family with sequence similarity 48, member B2 [Homo
sapiens]
Length = 817
Score = 29.3 bits (64), Expect = 4.2
Identities = 21/53 (39%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 82 VKVPSWGLKA--------GLHPQRCCFLGQQLPATVAHVPGGISGVQDQGSGG 126
V+ S GLKA G C F Q P + A P GISG Q SGG
Sbjct: 566 VRTGSTGLKATNVEGPVRGAQVLGCSFKPVQAPGSGAPAPAGISGSGLQSSGG 618
>gi|4557673 pancreatic and duodenal homeobox 1 [Homo sapiens]
Length = 283
Score = 28.9 bits (63), Expect = 5.5
Identities = 26/93 (27%), Positives = 31/93 (33%), Gaps = 4/93 (4%)
Query: 95 PQRCCFLGQQLPATVAHVPGGISGVQDQGSGGTAGSAIVDRPVDTELLMLLHEPQHRPEA 154
P C ++G+Q P H G G +QGS V D + LH A
Sbjct: 32 PPACLYMGRQPPPPPPHPFPGALGALEQGSPPDISPYEVPPLADDPAVAHLHHHLPAQLA 91
Query: 155 LGHVETILPAALLPGKDVVASWEEPGATHLAVP 187
L H PA P EEP L P
Sbjct: 92 LPHP----PAGPFPEGAEPGVLEEPNRVQLPFP 120
>gi|148539554 indoleamine-pyrrole 2,3 dioxygenase-like 1 [Homo
sapiens]
Length = 420
Score = 28.9 bits (63), Expect = 5.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 111 HVPGGISGVQDQGSGGTAGSAIVDRPVDTELLMLLH 146
H+PG ++D+G+GGTA + + D L +LH
Sbjct: 382 HLPGPPQALKDRGTGGTAVMSFLKSVRDKTLESILH 417
>gi|23821023 interleukin 4 induced 1 isoform 1 precursor [Homo
sapiens]
Length = 567
Score = 28.9 bits (63), Expect = 5.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 79 DELVKVPSWGLKAGLHPQRCCFLGQQLPATVA 110
++L+KV +WGL L PQR +G + VA
Sbjct: 43 EQLLKVVTWGLNRTLKPQRVIVVGAGVAGLVA 74
>gi|27477089 interleukin 4 induced 1 isoform 2 [Homo sapiens]
Length = 589
Score = 28.9 bits (63), Expect = 5.5
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 79 DELVKVPSWGLKAGLHPQRCCFLGQQLPATVA 110
++L+KV +WGL L PQR +G + VA
Sbjct: 65 EQLLKVVTWGLNRTLKPQRVIVVGAGVAGLVA 96
>gi|49087132 sal-like 2 [Homo sapiens]
Length = 1007
Score = 28.9 bits (63), Expect = 5.5
Identities = 14/48 (29%), Positives = 27/48 (56%)
Query: 180 GATHLAVPVLHQQNQVLQLDRANVHEVPPQLCEAGLMLALLAATGEEP 227
G+ HL +P++ ++ +VLQ + + ++ Q+C L+L L T P
Sbjct: 173 GSGHLNIPLILEELRVLQQRQIHQMQMTEQICRQVLLLGSLGQTVGAP 220
>gi|239755899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 459
Score = 28.5 bits (62), Expect = 7.2
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 228 RVDLGIWFGARTELPYSIEGRQQ-------ANIRPALQGC 260
R DLG W A LP GR Q A +RPA QGC
Sbjct: 156 RADLGCWGSAPRALPCPF-GRGQLPACCSPATVRPAAQGC 194
>gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo
sapiens]
Length = 459
Score = 28.5 bits (62), Expect = 7.2
Identities = 18/40 (45%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 228 RVDLGIWFGARTELPYSIEGRQQ-------ANIRPALQGC 260
R DLG W A LP GR Q A +RPA QGC
Sbjct: 156 RADLGCWGSAPRALPCPF-GRGQLPACCSPATVRPAAQGC 194
>gi|213512168 hypothetical protein LOC259308 [Homo sapiens]
Length = 1335
Score = 28.5 bits (62), Expect = 7.2
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 163 PAALLPGKDVVASWEEPGATHLAVPVLHQQNQVLQLDRANVHEVPPQL 210
PA +LP K SW + HLA P H QL + ++PP++
Sbjct: 1084 PAGMLPNKTPRGSWRWSRSFHLADPCQHSPQHHPQL---KLPQLPPRV 1128
>gi|19924161 RPB5-mediating protein isoform b [Homo sapiens]
Length = 495
Score = 28.5 bits (62), Expect = 7.2
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 134 DRPVDTELLMLLHEPQHRPEALGHVETILPAALLPGKDVVASWEEPGATHLAVPVLHQ 191
D D EL L E + + E LG +++ + G+D +S EE + V +HQ
Sbjct: 163 DLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQ 220
>gi|19924159 RPB5-mediating protein isoform a [Homo sapiens]
Length = 535
Score = 28.5 bits (62), Expect = 7.2
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 134 DRPVDTELLMLLHEPQHRPEALGHVETILPAALLPGKDVVASWEEPGATHLAVPVLHQ 191
D D EL L E + + E LG +++ + G+D +S EE + V +HQ
Sbjct: 203 DLLADKELWARLEELERQEELLGELDSKPDTVIANGEDTTSSEEEKEDRNTNVNAMHQ 260
>gi|171460948 TSC22 domain family, member 1 isoform 1 [Homo sapiens]
Length = 1073
Score = 28.1 bits (61), Expect = 9.4
Identities = 40/159 (25%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
Query: 105 LPATVAHVPGGISGVQDQGSGGTAGSAIVDRPVDTELLMLLHEPQHRPEALGHVETILPA 164
LP T++ GG+S V D S A SA L L P P G E+ A
Sbjct: 924 LPQTISGDSGGMSAVSDGSSSSLAASA--------SLFPLKVLPLTTPLVDGEDESSSGA 975
Query: 165 ALLPGKDVVASWEEPGATHLAVPVLHQQNQVLQLDRANVHEVPPQLCEAGLMLALLAATG 224
+++ + + + +HL V ++ +VL+ + E QL + +L LA+
Sbjct: 976 SVVAIDNKIEQAMDLVKSHLMYAV-REEVEVLKEQIKELIEKNSQLEQENNLLKTLASPE 1034
Query: 225 EEPRVDLGIWFGA--RTELPYSIEGRQQANIRPALQGCG 261
+ + + G+ T P +G Q +PA QG G
Sbjct: 1035 QLAQFQAQLQTGSPPATTQP---QGTTQPPAQPASQGSG 1070
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,290,647
Number of Sequences: 37866
Number of extensions: 567501
Number of successful extensions: 1273
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1264
Number of HSP's gapped (non-prelim): 18
length of query: 290
length of database: 18,247,518
effective HSP length: 101
effective length of query: 189
effective length of database: 14,423,052
effective search space: 2725956828
effective search space used: 2725956828
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.