Guide to the Human Genome
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Name: LOC100291460 Sequence: fasta or formatted (290aa) NCBI GI: 239750429
Description:

PREDICTED: hypothetical protein XP_002347393

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.3         24           2
 C cysteine            2.8          8           2
 D aspartate           2.8          8           1
 E glutamate           5.9         17           2
 F phenylalanine       2.1          6           1
 G glycine            10.0         29           2
 H histidine           4.1         12           1
 I isoleucine          3.4         10           1
 K lysine              3.1          9           1
 L leucine            14.1         41           2
 M methionine          1.7          5           2
 N asparagine          1.7          5           1
 P proline             6.6         19           2
 Q glutamine           6.9         20           2
 R arginine            5.9         17           1
 S serine              5.9         17           2
 T threonine           4.5         13           1
 V valine              7.6         22           2
 W tryptophan          2.1          6           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347393 
LOC100287897          1.000   PREDICTED: hypothetical protein XP_002343256 
LOC100291076          0.009   PREDICTED: hypothetical protein XP_002347846 
LOC100294444          0.007   PREDICTED: similar to family with sequence similari...
RAB3GAP1              0.007   RAB3 GTPase-activating protein 
FAM48B2               0.007   family with sequence similarity 48, member B2 [Homo...
PDX1                  0.007   pancreatic and duodenal homeobox 1 
IDO2                  0.007   indoleamine-pyrrole 2,3 dioxygenase-like 1 
IL4I1                 0.007   interleukin 4 induced 1 isoform 1 precursor 
IL4I1                 0.007   interleukin 4 induced 1 isoform 2 
SALL2                 0.007   sal-like 2 
LOC100292296          0.005   PREDICTED: hypothetical protein 
LOC100290476          0.005   PREDICTED: hypothetical protein XP_002347412 
C9orf144B             0.005   hypothetical protein LOC259308 
C19orf2               0.005   RPB5-mediating protein isoform b 
C19orf2               0.005   RPB5-mediating protein isoform a 
TSC22D1               0.005   TSC22 domain family, member 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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