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Search of human proteins with 239744548
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
(192 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 397 e-111
gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo ... 159 1e-39
gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo ... 150 5e-37
gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 78 4e-15
gi|83699414 beta-defensin 130 [Homo sapiens] 78 4e-15
gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 75 4e-14
gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo ... 75 4e-14
gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo ... 75 4e-14
gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 70 1e-12
gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 70 1e-12
gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo sapiens] 70 1e-12
gi|22748611 defensin, beta 106A precursor [Homo sapiens] 35 0.051
gi|103485143 defensin, beta 106B precursor [Homo sapiens] 35 0.051
gi|8923890 defensin, beta 103A precursor [Homo sapiens] 34 0.067
gi|239753808 PREDICTED: hypothetical protein [Homo sapiens] 34 0.067
gi|239748372 PREDICTED: hypothetical protein [Homo sapiens] 34 0.067
gi|125656159 beta-defensin 103B precursor [Homo sapiens] 34 0.067
gi|58218998 hypothetical protein LOC340204 [Homo sapiens] 32 0.33
gi|50344744 beta-defensin 108B [Homo sapiens] 32 0.43
gi|169166494 PREDICTED: hypothetical protein [Homo sapiens] 31 0.57
gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo ... 30 0.97
gi|4826692 defensin, beta 4 precursor [Homo sapiens] 30 0.97
gi|58865339 defensin, beta 121 [Homo sapiens] 30 0.97
gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens] 30 1.6
gi|46409558 beta-defensin 32 precursor [Homo sapiens] 29 2.8
gi|76563936 defensin, beta 125 preproprotein [Homo sapiens] 29 2.8
gi|193788624 solute carrier family 38, member 5 [Homo sapiens] 28 4.8
gi|239756910 PREDICTED: hypothetical protein [Homo sapiens] 27 8.2
gi|239751413 PREDICTED: hypothetical protein XP_002347827 [Homo ... 27 8.2
gi|239745923 PREDICTED: hypothetical protein XP_002343577 [Homo ... 27 8.2
>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
Length = 192
Score = 397 bits (1021), Expect = e-111
Identities = 192/192 (100%), Positives = 192/192 (100%)
Query: 1 MKRKSKGTRVSACAIHPTGDRRRANTIEKLGVGCCVKWDATGSKAQEDLGSLGLHEKTPQ 60
MKRKSKGTRVSACAIHPTGDRRRANTIEKLGVGCCVKWDATGSKAQEDLGSLGLHEKTPQ
Sbjct: 1 MKRKSKGTRVSACAIHPTGDRRRANTIEKLGVGCCVKWDATGSKAQEDLGSLGLHEKTPQ 60
Query: 61 CAAVRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRM 120
CAAVRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRM
Sbjct: 61 CAAVRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRM 120
Query: 121 KCCRAWWILMPIPTPLIMSDYQEPLKRCRSKKAKNALDLHRELQAIQEPQDTLRNNHVDH 180
KCCRAWWILMPIPTPLIMSDYQEPLKRCRSKKAKNALDLHRELQAIQEPQDTLRNNHVDH
Sbjct: 121 KCCRAWWILMPIPTPLIMSDYQEPLKRCRSKKAKNALDLHRELQAIQEPQDTLRNNHVDH 180
Query: 181 IAQAQLHGSPLG 192
IAQAQLHGSPLG
Sbjct: 181 IAQAQLHGSPLG 192
>gi|239743480 PREDICTED: hypothetical protein XP_002342858 [Homo
sapiens]
Length = 87
Score = 159 bits (403), Expect = 1e-39
Identities = 74/83 (89%), Positives = 78/83 (93%)
Query: 64 VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
+RLH+LLLILLLFSILLSPVRG LGPAE HCL+L GVCR DVC +VEDQIGACRRRMKCC
Sbjct: 1 MRLHLLLLILLLFSILLSPVRGGLGPAEGHCLNLFGVCRTDVCNIVEDQIGACRRRMKCC 60
Query: 124 RAWWILMPIPTPLIMSDYQEPLK 146
RAWWILMPIPTPLIMSDYQEPLK
Sbjct: 61 RAWWILMPIPTPLIMSDYQEPLK 83
>gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo
sapiens]
Length = 87
Score = 150 bits (380), Expect = 5e-37
Identities = 74/84 (88%), Positives = 79/84 (94%), Gaps = 2/84 (2%)
Query: 64 VRLHVLLLILLLFSILLSPV-RGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKC 122
+RLH+LLLILL FSILLSP +G LGPAE HCL+LSGVCRRDVCKVVEDQIGACRR+MKC
Sbjct: 1 MRLHLLLLILL-FSILLSPGNKGGLGPAEGHCLNLSGVCRRDVCKVVEDQIGACRRKMKC 59
Query: 123 CRAWWILMPIPTPLIMSDYQEPLK 146
CRAWWILMPIPTPLIMSDYQEPLK
Sbjct: 60 CRAWWILMPIPTPLIMSDYQEPLK 83
>gi|169172908 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 79
Score = 78.2 bits (191), Expect = 4e-15
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 64 VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
++LH L+ +LLLF L+ + + P + C++L GVCR +C ++D IG C KCC
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
Query: 124 RAWWILMPIPTPL 136
R WWIL P PTP+
Sbjct: 61 RRWWILEPYPTPV 73
>gi|83699414 beta-defensin 130 [Homo sapiens]
Length = 79
Score = 78.2 bits (191), Expect = 4e-15
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 64 VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
++LH L+ +LLLF L+ + + P + C++L GVCR +C ++D IG C KCC
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKKCC 60
Query: 124 RAWWILMPIPTPL 136
R WWIL P PTP+
Sbjct: 61 RRWWILEPYPTPV 73
>gi|239753810 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 128
Score = 74.7 bits (182), Expect = 4e-14
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 62 AAVRLHVLLLILLLFSILLSPVR--GALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRR 119
+ +LH L+ +LLLF L+ + G + P + C++L GVCR +C ++D IG C
Sbjct: 47 STTKLHSLISVLLLFVTLIPKAKMTGVI-PGQKQCIALKGVCRDKLCSTLDDTIGICNEG 105
Query: 120 MKCCRAWWILMPIPTPL 136
KCCR WWIL P PTP+
Sbjct: 106 KKCCRRWWILEPYPTPV 122
>gi|239748374 PREDICTED: hypothetical protein XP_002346650 [Homo
sapiens]
Length = 128
Score = 74.7 bits (182), Expect = 4e-14
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 62 AAVRLHVLLLILLLFSILLSPVR--GALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRR 119
+ +LH L+ +LLLF L+ + G + P + C++L GVCR +C ++D IG C
Sbjct: 47 STTKLHSLISVLLLFVTLIPKAKMTGVI-PGQKQCIALKGVCRDKLCSTLDDTIGICNEG 105
Query: 120 MKCCRAWWILMPIPTPL 136
KCCR WWIL P PTP+
Sbjct: 106 KKCCRRWWILEPYPTPV 122
>gi|239742299 PREDICTED: hypothetical protein XP_002342487 [Homo
sapiens]
Length = 128
Score = 74.7 bits (182), Expect = 4e-14
Identities = 33/77 (42%), Positives = 47/77 (61%), Gaps = 3/77 (3%)
Query: 62 AAVRLHVLLLILLLFSILLSPVR--GALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRR 119
+ +LH L+ +LLLF L+ + G + P + C++L GVCR +C ++D IG C
Sbjct: 47 STTKLHSLISVLLLFVTLIPKAKMTGVI-PGQKQCIALKGVCRDKLCSTLDDTIGICNEG 105
Query: 120 MKCCRAWWILMPIPTPL 136
KCCR WWIL P PTP+
Sbjct: 106 KKCCRRWWILEPYPTPV 122
>gi|169202991 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 78
Score = 70.1 bits (170), Expect = 1e-12
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 64 VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
++LH L+ +LLLF L+ + + P + C++L GVCR +C ++D IG C K C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 124 RAWWILMPIPTPL 136
R WWIL P PTP+
Sbjct: 60 RRWWILEPYPTPV 72
>gi|169203490 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 78
Score = 70.1 bits (170), Expect = 1e-12
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 64 VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
++LH L+ +LLLF L+ + + P + C++L GVCR +C ++D IG C K C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 124 RAWWILMPIPTPL 136
R WWIL P PTP+
Sbjct: 60 RRWWILEPYPTPV 72
>gi|113422487 PREDICTED: similar to beta-defensin 130 [Homo sapiens]
Length = 78
Score = 70.1 bits (170), Expect = 1e-12
Identities = 31/73 (42%), Positives = 45/73 (61%), Gaps = 1/73 (1%)
Query: 64 VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
++LH L+ +LLLF L+ + + P + C++L GVCR +C ++D IG C K C
Sbjct: 1 MKLHSLISVLLLFVTLIPKGKTGVIPGQKQCIALKGVCRDKLCSTLDDTIGICNEGKK-C 59
Query: 124 RAWWILMPIPTPL 136
R WWIL P PTP+
Sbjct: 60 RRWWILEPYPTPV 72
>gi|22748611 defensin, beta 106A precursor [Homo sapiens]
Length = 65
Score = 34.7 bits (78), Expect = 0.051
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 73 LLLFSIL--LSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCCR 124
L LF++L L+P + A + C L G C+ + C E+ I C++ +KCCR
Sbjct: 5 LFLFAVLFFLTPAKNAF--FDEKCNKLKGTCKNN-CGKNEELIALCQKSLKCCR 55
>gi|103485143 defensin, beta 106B precursor [Homo sapiens]
Length = 65
Score = 34.7 bits (78), Expect = 0.051
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 73 LLLFSIL--LSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCCR 124
L LF++L L+P + A + C L G C+ + C E+ I C++ +KCCR
Sbjct: 5 LFLFAVLFFLTPAKNAF--FDEKCNKLKGTCKNN-CGKNEELIALCQKSLKCCR 55
>gi|8923890 defensin, beta 103A precursor [Homo sapiens]
Length = 67
Score = 34.3 bits (77), Expect = 0.067
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 64 VRLHVLLLILLLFSILLSPVRGALGPA--EVHCLSLSGVCRRDVCKVVEDQIGACRRR-M 120
+R+H LL LL ++ P G + + +C G C C E+QIG C R
Sbjct: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
Query: 121 KCCR 124
KCCR
Sbjct: 61 KCCR 64
>gi|239753808 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 34.3 bits (77), Expect = 0.067
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 62 AAVRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMK 121
+AVR+ VLL + F + P RG C +G CR D C E +G C
Sbjct: 9 SAVRIAVLLFAIFFFMSQVLPARGKFKEI---CERPNGSCR-DFCLETEIHVGRCLNSRP 64
Query: 122 CC 123
CC
Sbjct: 65 CC 66
>gi|239748372 PREDICTED: hypothetical protein [Homo sapiens]
Length = 83
Score = 34.3 bits (77), Expect = 0.067
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Query: 62 AAVRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMK 121
+AVR+ VLL + F + P RG C +G CR D C E +G C
Sbjct: 9 SAVRIAVLLFAIFFFMSQVLPARGKFKEI---CERPNGSCR-DFCLETEIHVGRCLNSRP 64
Query: 122 CC 123
CC
Sbjct: 65 CC 66
>gi|125656159 beta-defensin 103B precursor [Homo sapiens]
Length = 67
Score = 34.3 bits (77), Expect = 0.067
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 64 VRLHVLLLILLLFSILLSPVRGALGPA--EVHCLSLSGVCRRDVCKVVEDQIGACRRR-M 120
+R+H LL LL ++ P G + + +C G C C E+QIG C R
Sbjct: 1 MRIHYLLFALLFLFLVPVPGHGGIINTLQKYYCRVRGGRCAVLSCLPKEEQIGKCSTRGR 60
Query: 121 KCCR 124
KCCR
Sbjct: 61 KCCR 64
>gi|58218998 hypothetical protein LOC340204 [Homo sapiens]
Length = 121
Score = 32.0 bits (71), Expect = 0.33
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 69 LLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCCRA 125
LLL+ LLF L RG+L P + + L L C R+ + + G C+R C +
Sbjct: 7 LLLLFLLFFFLFLLTRGSLSPTKYNLLELKESCIRN----QDCETGCCQRAPDNCES 59
>gi|50344744 beta-defensin 108B [Homo sapiens]
Length = 73
Score = 31.6 bits (70), Expect = 0.43
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 64 VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
+R+ VLL + F + P RG C +G CR D C E +G C CC
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFKEI---CERPNGSCR-DFCLETEIHVGRCLNSQPCC 56
>gi|169166494 PREDICTED: hypothetical protein [Homo sapiens]
Length = 73
Score = 31.2 bits (69), Expect = 0.57
Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 64 VRLHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
+R+ VLL + F + P RG C +G CR D C E +G C CC
Sbjct: 1 MRIAVLLFAIFFFMSQVLPARGKFKEI---CERPNGSCR-DFCLETEIHVGRCLNSRPCC 56
>gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo
sapiens]
Length = 64
Score = 30.4 bits (67), Expect = 0.97
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 66 LHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGAC-RRRMKCCR 124
L++L L +F + L V G +G V CL +C C QIG C KCC+
Sbjct: 4 LYLLFSFLFIFLMPLPGVFGGIGDP-VTCLKSGAICHPVFCPRRYKQIGTCGLPGTKCCK 62
>gi|4826692 defensin, beta 4 precursor [Homo sapiens]
Length = 64
Score = 30.4 bits (67), Expect = 0.97
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 2/60 (3%)
Query: 66 LHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGAC-RRRMKCCR 124
L++L L +F + L V G +G V CL +C C QIG C KCC+
Sbjct: 4 LYLLFSFLFIFLMPLPGVFGGIGDP-VTCLKSGAICHPVFCPRRYKQIGTCGLPGTKCCK 62
>gi|58865339 defensin, beta 121 [Homo sapiens]
Length = 76
Score = 30.4 bits (67), Expect = 0.97
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 69 LLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
LLL+LL ++LL+ V + C SG CR CK E C+ KCC
Sbjct: 3 LLLLLLTVTLLLAQVTPVM-----KCWGKSGRCRT-TCKESEVYYILCKTEAKCC 51
>gi|23503329 defensin, beta 119 isoform c precursor [Homo sapiens]
Length = 88
Score = 29.6 bits (65), Expect = 1.6
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 71 LILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
L+ L +ILL+ + V C + G CR +CK ED I CR R +CC
Sbjct: 3 LLYLFLAILLAIEEPVIS---VECW-MDGHCRL-LCKDGEDSIIRCRNRKRCC 50
>gi|46409558 beta-defensin 32 precursor [Homo sapiens]
Length = 95
Score = 28.9 bits (63), Expect = 2.8
Identities = 20/86 (23%), Positives = 37/86 (43%), Gaps = 2/86 (2%)
Query: 69 LLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCCRAWWI 128
LLL+L L + + G ++ C+S + R C E + C KCC ++
Sbjct: 4 LLLVLAALGFLTQVIPASAGGSK--CVSNTPGYCRTCCHWGETALFMCNASRKCCISYSF 61
Query: 129 LMPIPTPLIMSDYQEPLKRCRSKKAK 154
L P ++ ++ + +R +K K
Sbjct: 62 LPKPDLPQLIGNHWQSRRRNTQRKDK 87
>gi|76563936 defensin, beta 125 preproprotein [Homo sapiens]
Length = 156
Score = 28.9 bits (63), Expect = 2.8
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 66 LHVLLLILLLFSILLSPVRGALGPAEVHCLSLSGVCRRDVCKVVEDQIGACRRRMKCC 123
+++L+L ++ +L +G+ P + ++ G CRR C E I CR ++ CC
Sbjct: 1 MNILMLTFIICGLLTRVTKGSFEPQKCWKNNV-GHCRRR-CLDTERYILLCRNKLSCC 56
>gi|193788624 solute carrier family 38, member 5 [Homo sapiens]
Length = 472
Score = 28.1 bits (61), Expect = 4.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 56 EKTPQCAAVRLHVLLLILLLFSILLSPVRGAL 87
+K P VRL VLL + L ++L P+R AL
Sbjct: 330 QKDPLILCVRLAVLLAVTLTVPVVLFPIRRAL 361
>gi|239756910 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 27.3 bits (59), Expect = 8.2
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 14 AIHPTGDRR--RANTIEKLGVGCCVK--WDATGSKAQEDLGSLGLHEKTPQCAAVRLHVL 69
++HP+ DR R + E + C+K W E +G H+ P A VL
Sbjct: 3 SLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
Query: 70 LLILL 74
LL+LL
Sbjct: 63 LLLLL 67
>gi|239751413 PREDICTED: hypothetical protein XP_002347827 [Homo
sapiens]
Length = 155
Score = 27.3 bits (59), Expect = 8.2
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 14 AIHPTGDRR--RANTIEKLGVGCCVK--WDATGSKAQEDLGSLGLHEKTPQCAAVRLHVL 69
++HP+ DR R + E + C+K W E +G H+ P A VL
Sbjct: 3 SLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
Query: 70 LLILL 74
LL+LL
Sbjct: 63 LLLLL 67
>gi|239745923 PREDICTED: hypothetical protein XP_002343577 [Homo
sapiens]
Length = 155
Score = 27.3 bits (59), Expect = 8.2
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)
Query: 14 AIHPTGDRR--RANTIEKLGVGCCVK--WDATGSKAQEDLGSLGLHEKTPQCAAVRLHVL 69
++HP+ DR R + E + C+K W E +G H+ P A VL
Sbjct: 3 SLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
Query: 70 LLILL 74
LL+LL
Sbjct: 63 LLLLL 67
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.137 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,071,057
Number of Sequences: 37866
Number of extensions: 358893
Number of successful extensions: 1023
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1000
Number of HSP's gapped (non-prelim): 31
length of query: 192
length of database: 18,247,518
effective HSP length: 97
effective length of query: 95
effective length of database: 14,574,516
effective search space: 1384579020
effective search space used: 1384579020
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.