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Search of human proteins with 239744540
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744540 PREDICTED: hypothetical protein XP_002343179 [Homo
sapiens]
(164 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755722 PREDICTED: hypothetical protein [Homo sapiens] 328 2e-90
gi|239750240 PREDICTED: hypothetical protein [Homo sapiens] 328 2e-90
gi|239744540 PREDICTED: hypothetical protein XP_002343179 [Homo ... 328 2e-90
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 44 6e-05
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 39 0.002
gi|46309849 hypothetical protein LOC57035 [Homo sapiens] 37 0.010
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 36 0.013
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 36 0.013
gi|119226260 calcium homeostasis endoplasmic reticulum protein [... 36 0.013
gi|34452686 ring finger protein, LIM domain interacting [Homo sa... 35 0.038
gi|34452684 ring finger protein, LIM domain interacting [Homo sa... 35 0.038
gi|194018562 histamine receptor H3 [Homo sapiens] 35 0.038
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 35 0.038
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 34 0.065
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 34 0.065
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens] 34 0.065
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 34 0.065
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 34 0.065
gi|24431935 reticulon 4 isoform A [Homo sapiens] 33 0.085
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 33 0.085
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 33 0.085
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 33 0.085
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 33 0.085
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 33 0.085
gi|122937219 F-box protein 41 [Homo sapiens] 33 0.11
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 33 0.14
gi|157785672 tetratricopeptide repeat domain 24 [Homo sapiens] 32 0.19
gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo sap... 32 0.25
gi|176866318 hypothetical protein LOC646450 [Homo sapiens] 32 0.25
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 32 0.32
>gi|239755722 PREDICTED: hypothetical protein [Homo sapiens]
Length = 164
Score = 328 bits (840), Expect = 2e-90
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MYIEGLAPSRRLLAPACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAG 60
MYIEGLAPSRRLLAPACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAG
Sbjct: 1 MYIEGLAPSRRLLAPACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAG 60
Query: 61 PQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSIS 120
PQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSIS
Sbjct: 61 PQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSIS 120
Query: 121 WSLSPRRRTNSFQRNGGTFSTTAYSVAGNSLSRLCGLWALSSHF 164
WSLSPRRRTNSFQRNGGTFSTTAYSVAGNSLSRLCGLWALSSHF
Sbjct: 121 WSLSPRRRTNSFQRNGGTFSTTAYSVAGNSLSRLCGLWALSSHF 164
>gi|239750240 PREDICTED: hypothetical protein [Homo sapiens]
Length = 164
Score = 328 bits (840), Expect = 2e-90
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MYIEGLAPSRRLLAPACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAG 60
MYIEGLAPSRRLLAPACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAG
Sbjct: 1 MYIEGLAPSRRLLAPACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAG 60
Query: 61 PQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSIS 120
PQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSIS
Sbjct: 61 PQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSIS 120
Query: 121 WSLSPRRRTNSFQRNGGTFSTTAYSVAGNSLSRLCGLWALSSHF 164
WSLSPRRRTNSFQRNGGTFSTTAYSVAGNSLSRLCGLWALSSHF
Sbjct: 121 WSLSPRRRTNSFQRNGGTFSTTAYSVAGNSLSRLCGLWALSSHF 164
>gi|239744540 PREDICTED: hypothetical protein XP_002343179 [Homo
sapiens]
Length = 164
Score = 328 bits (840), Expect = 2e-90
Identities = 164/164 (100%), Positives = 164/164 (100%)
Query: 1 MYIEGLAPSRRLLAPACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAG 60
MYIEGLAPSRRLLAPACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAG
Sbjct: 1 MYIEGLAPSRRLLAPACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAG 60
Query: 61 PQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSIS 120
PQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSIS
Sbjct: 61 PQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSIS 120
Query: 121 WSLSPRRRTNSFQRNGGTFSTTAYSVAGNSLSRLCGLWALSSHF 164
WSLSPRRRTNSFQRNGGTFSTTAYSVAGNSLSRLCGLWALSSHF
Sbjct: 121 WSLSPRRRTNSFQRNGGTFSTTAYSVAGNSLSRLCGLWALSSHF 164
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 43.9 bits (102), Expect = 6e-05
Identities = 49/148 (33%), Positives = 62/148 (41%), Gaps = 19/148 (12%)
Query: 6 LAPSRRLLAPACPCR------TPPF----QKKVGLEGDLAGRSLELPAGAQP----HLRR 51
LAPS L A PCR TPP Q+ + + G Q + R
Sbjct: 1370 LAPSSLLSPEASPCRNDMNTRTPPEPSAKQRSMRCYRKACRSASPSSQGWQGRRGRNSRS 1429
Query: 52 LGAGGRAAGPQSASSMSSRQPSRSMSRSTRPSS-----SSVASRRGVRRLQVASMLYCAS 106
+ +G S+SS SS SRS SRS P SS +S RR +S +S
Sbjct: 1430 VSSGSNRTSEASSSSSSSSSSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSS 1489
Query: 107 RRQRPFCSSSRSISWSLSPRRRTNSFQR 134
SSSRS S S SPRRR++ +R
Sbjct: 1490 SSSSSSSSSSRSRSRSPSPRRRSDRRRR 1517
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 39.3 bits (90), Expect = 0.002
Identities = 44/129 (34%), Positives = 55/129 (42%), Gaps = 16/129 (12%)
Query: 22 PPFQKKVGLEGDLAGRSLEL-----------PAGAQP-HLRRLGAGGRAAGPQSASSMSS 69
PP +KK E +G + E PA A P ++ + R G ++SS
Sbjct: 513 PPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRSRDRKPGSHASSSARR 572
Query: 70 RQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSISWSLSPRR-R 128
R SRS SRSTR S S RRG R S RR+R S + S S S RR R
Sbjct: 573 RSRSRSRSRSTRRRSRSTDRRRGGSR---RSRSREKRRRRRRSASPPPATSSSSSSRRER 629
Query: 129 TNSFQRNGG 137
R+GG
Sbjct: 630 HRGKHRDGG 638
>gi|46309849 hypothetical protein LOC57035 [Homo sapiens]
Length = 290
Score = 36.6 bits (83), Expect = 0.010
Identities = 30/74 (40%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 64 ASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSISWSL 123
+S +SSR SRS SRS+R S S V+SR R + S R QR + SRS S S
Sbjct: 27 SSRLSSRSRSRSFSRSSR-SHSRVSSRFSSRSRRSKSRSRSRRRHQRKYRRYSRSYSRSR 85
Query: 124 SPRRRTNSFQRNGG 137
S R +R G
Sbjct: 86 SRSRSRRYRERRYG 99
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 36.2 bits (82), Expect = 0.013
Identities = 32/82 (39%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 50 RRLGAGGRAAGPQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQ 109
RR + R++ +S+S SS SRS SRS SSSS SR + + SR
Sbjct: 200 RRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSR-- 257
Query: 110 RPFCSSSRSISWSLSPRRRTNS 131
SSSRS S SPR+R+ S
Sbjct: 258 ----SSSRSHRGSSSPRKRSYS 275
Score = 32.3 bits (72), Expect = 0.19
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 58 AAGPQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSR 117
A+ + ++ S + SRS SRS+ SSS +S R + S +S Q SSSR
Sbjct: 187 ASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246
Query: 118 SISWSLSPRRRTNSFQRNGGTF-STTAYSVAGNSLSR 153
S S + R++S G + +YS + +S R
Sbjct: 247 ERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPER 283
Score = 30.8 bits (68), Expect = 0.55
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 58 AAGPQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSR 117
++ QS S SSR+ SRS +R SS S R+ +S R ++ S SR
Sbjct: 234 SSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKR--SRSR 291
Query: 118 SISWSLSPRRRTNS 131
S S +RRT S
Sbjct: 292 SSSSGDRKKRRTRS 305
Score = 30.4 bits (67), Expect = 0.72
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 54 AGGRAAGPQSASSMS---SRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQR 110
+ R++ P S+ S S SR S S SRS S SR R S +S R+R
Sbjct: 213 SSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKR 272
Query: 111 PFCSSSRSISWSLSPRRRTNSFQRNGG 137
+ SSS S + R+R+ S + G
Sbjct: 273 SYSSSSSSPERN---RKRSRSRSSSSG 296
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 36.2 bits (82), Expect = 0.013
Identities = 32/82 (39%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Query: 50 RRLGAGGRAAGPQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQ 109
RR + R++ +S+S SS SRS SRS SSSS SR + + SR
Sbjct: 200 RRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSR-- 257
Query: 110 RPFCSSSRSISWSLSPRRRTNS 131
SSSRS S SPR+R+ S
Sbjct: 258 ----SSSRSHRGSSSPRKRSYS 275
Score = 32.3 bits (72), Expect = 0.19
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
Query: 58 AAGPQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSR 117
A+ + ++ S + SRS SRS+ SSS +S R + S +S Q SSSR
Sbjct: 187 ASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246
Query: 118 SISWSLSPRRRTNSFQRNGGTF-STTAYSVAGNSLSR 153
S S + R++S G + +YS + +S R
Sbjct: 247 ERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPER 283
Score = 30.8 bits (68), Expect = 0.55
Identities = 25/74 (33%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 58 AAGPQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSR 117
++ QS S SSR+ SRS +R SS S R+ +S R ++ S SR
Sbjct: 234 SSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKR--SRSR 291
Query: 118 SISWSLSPRRRTNS 131
S S +RRT S
Sbjct: 292 SSSSGDRKKRRTRS 305
Score = 30.4 bits (67), Expect = 0.72
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 54 AGGRAAGPQSASSMS---SRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQR 110
+ R++ P S+ S S SR S S SRS S SR R S +S R+R
Sbjct: 213 SSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKR 272
Query: 111 PFCSSSRSISWSLSPRRRTNSFQRNGG 137
+ SSS S + R+R+ S + G
Sbjct: 273 SYSSSSSSPERN---RKRSRSRSSSSG 296
>gi|119226260 calcium homeostasis endoplasmic reticulum protein
[Homo sapiens]
Length = 916
Score = 36.2 bits (82), Expect = 0.013
Identities = 47/140 (33%), Positives = 54/140 (38%), Gaps = 12/140 (8%)
Query: 6 LAPSRRLLAPACPCRTPPFQKKV-GLEGDLAGRSLELPAGAQPHLRRLGAGGRAAGPQSA 64
+ PS RLLA +PP + EG E RR G R +GP S
Sbjct: 680 MPPSERLLAAVEAFYSPPSHDRPRNSEGWEQNGLYEFFRAKMRARRRKGQEKRNSGP-SR 738
Query: 65 SSMSSRQPSRSMSRSTRPSSSSVAS---------RRGVRRLQVASMLYCASRRQRPFCSS 115
S S+ RS SRS SS S S R R + S S R R S
Sbjct: 739 SRSRSKSRGRSSSRSNSRSSKSSGSYSRSRSRSCSRSYSRSRSRSRSRSRSSRSRS-RSQ 797
Query: 116 SRSISWSLSPRRRTNSFQRN 135
SRS S S SP RR S R+
Sbjct: 798 SRSRSKSYSPGRRRRSRSRS 817
>gi|34452686 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 34.7 bits (78), Expect = 0.038
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 32 GDLAGRSLELPAGAQPHLRRLGAGGRAAGPQSASSMSSRQPSRSMSRSTRPSSSS 86
G ++ R++E A+ R G+GG ++ S+SS SS S S S S+ PSSSS
Sbjct: 430 GSVSNRNMER---AESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSS 481
Score = 26.9 bits (58), Expect = 7.9
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 51 RLGAGGRAAGPQSASSMSSRQPSRSMSRSTRPSSSSVAS 89
R G GG G S SS SS S S S S+ SSSS S
Sbjct: 443 RSGRGGSGGGSSSGSSSSS---SSSSSSSSSSSSSSSPS 478
>gi|34452684 ring finger protein, LIM domain interacting [Homo
sapiens]
Length = 624
Score = 34.7 bits (78), Expect = 0.038
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 32 GDLAGRSLELPAGAQPHLRRLGAGGRAAGPQSASSMSSRQPSRSMSRSTRPSSSS 86
G ++ R++E A+ R G+GG ++ S+SS SS S S S S+ PSSSS
Sbjct: 430 GSVSNRNMER---AESRSGRGGSGGGSSSGSSSSSSSSSSSSSSSSSSSSPSSSS 481
Score = 26.9 bits (58), Expect = 7.9
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 51 RLGAGGRAAGPQSASSMSSRQPSRSMSRSTRPSSSSVAS 89
R G GG G S SS SS S S S S+ SSSS S
Sbjct: 443 RSGRGGSGGGSSSGSSSSS---SSSSSSSSSSSSSSSPS 478
>gi|194018562 histamine receptor H3 [Homo sapiens]
Length = 445
Score = 34.7 bits (78), Expect = 0.038
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 9/74 (12%)
Query: 53 GAGGRAAGPQSASSMSSR--QPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQR 110
G GG A P S+S SSR + RS+ R ++PS+SS + +R+++ S S QR
Sbjct: 295 GGGGSVASPTSSSGSSSRGTERPRSLKRGSKPSASSASLE---KRMKMVSQ----SFTQR 347
Query: 111 PFCSSSRSISWSLS 124
S R ++ SL+
Sbjct: 348 FRLSRDRKVAKSLA 361
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 34.7 bits (78), Expect = 0.038
Identities = 38/141 (26%), Positives = 51/141 (36%), Gaps = 22/141 (15%)
Query: 42 PAGAQPHLRRLGAGGRAAGPQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASM 101
P G P R A R++ S+SS S SRS SRS+ S R R + S
Sbjct: 362 PGGPAPG-RNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSR 420
Query: 102 LYCASRRQRPFCSSSRSIS---------------------WSLSPRRRTNSFQRNGGTFS 140
+ SR + S SRS PRRR+ S +G +
Sbjct: 421 SWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYR 480
Query: 141 TTAYSVAGNSLSRLCGLWALS 161
+ +S SR W+LS
Sbjct: 481 RGGRGLRHHSSSRSRSSWSLS 501
Score = 32.7 bits (73), Expect = 0.14
Identities = 41/113 (36%), Positives = 47/113 (41%), Gaps = 15/113 (13%)
Query: 42 PAGAQPHLRRLGAGGRAAGPQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASM 101
PA QP G A S+SS SS S SRS+ S SS SRRG
Sbjct: 357 PAPPQPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSS--SRSSSRSRRG-------GG 407
Query: 102 LYCASRRQRPFCSSSRSISWSLS-PRRRTNSFQRNGGTFSTTAYSVAGNSLSR 153
Y + R R SRS SWS S R R S R+ G + S G+ SR
Sbjct: 408 YYRSGRHAR-----SRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSR 455
Score = 26.9 bits (58), Expect = 7.9
Identities = 28/78 (35%), Positives = 32/78 (41%), Gaps = 13/78 (16%)
Query: 50 RRLGAGGRAAGPQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQ 109
RR GG G + + S + R RS S S RRG R L+ S
Sbjct: 440 RRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYRRGGRGLRHHSS-------- 491
Query: 110 RPFCSSSRSISWSLSPRR 127
S SRS SWSLSP R
Sbjct: 492 ----SRSRS-SWSLSPSR 504
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 33.9 bits (76), Expect = 0.065
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 62 QSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSISW 121
+SASS SS SRS S S+ SS+S S G +S +S + SSS S S
Sbjct: 66 RSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR---SSSSSSSSG 122
Query: 122 SLSPRRRTNSFQR 134
S SP RR + +R
Sbjct: 123 SPSPSRRRHDNRR 135
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 33.9 bits (76), Expect = 0.065
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 62 QSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSISW 121
+SASS SS SRS S S+ SS+S S G +S +S + SSS S S
Sbjct: 66 RSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR---SSSSSSSSG 122
Query: 122 SLSPRRRTNSFQR 134
S SP RR + +R
Sbjct: 123 SPSPSRRRHDNRR 135
>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
Length = 2968
Score = 33.9 bits (76), Expect = 0.065
Identities = 26/67 (38%), Positives = 31/67 (46%)
Query: 54 AGGRAAGPQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFC 113
A RAA P S+SS SS S S S S+ SSSS +S +S +S
Sbjct: 2605 ASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 2664
Query: 114 SSSRSIS 120
SSS S S
Sbjct: 2665 SSSSSSS 2671
Score = 32.0 bits (71), Expect = 0.25
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 53 GAGGRAAGPQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPF 112
G GG G ++ S+ SSR S + S S+ SSSS +S +S +S
Sbjct: 2591 GDGGCGTGGRNCSAASSRAASPASSSSSSSSSSSSSS-------SSSSSSSSSSSSSSSS 2643
Query: 113 CSSSRSISWSLSPRRRTNSFQRNGGTFSTT 142
SSS S S S S ++S + + STT
Sbjct: 2644 SSSSSSSSSSSSSSSSSSSSSSSSSSSSTT 2673
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 33.9 bits (76), Expect = 0.065
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 62 QSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSISW 121
+SASS SS SRS S S+ SS+S S G +S +S + SSS S S
Sbjct: 66 RSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR---SSSSSSSSG 122
Query: 122 SLSPRRRTNSFQR 134
S SP RR + +R
Sbjct: 123 SPSPSRRRHDNRR 135
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 33.9 bits (76), Expect = 0.065
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 62 QSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSISW 121
+SASS SS SRS S S+ SS+S S G +S +S + SSS S S
Sbjct: 66 RSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR---SSSSSSSSG 122
Query: 122 SLSPRRRTNSFQR 134
S SP RR + +R
Sbjct: 123 SPSPSRRRHDNRR 135
>gi|24431935 reticulon 4 isoform A [Homo sapiens]
Length = 1192
Score = 33.5 bits (75), Expect = 0.085
Identities = 35/142 (24%), Positives = 55/142 (38%), Gaps = 4/142 (2%)
Query: 14 APACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAGPQSASSMSSRQ-- 71
APA P TP K+ G G + LPA ++P +R A Q +++S+ Q
Sbjct: 165 APAAPPSTPAAPKRRGSSGSVDETLFALPAASEPVIRS-SAENMDLKEQPGNTISAGQED 223
Query: 72 -PSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSISWSLSPRRRTN 130
PS + + S S S + + L + + S +S + +T
Sbjct: 224 FPSVLLETAASLPSLSPLSAASFKEHEYLGNLSTVLPTEGTLQENVSEASKEVSEKAKTL 283
Query: 131 SFQRNGGTFSTTAYSVAGNSLS 152
R+ FS YS G+S S
Sbjct: 284 LIDRDLTEFSELEYSEMGSSFS 305
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 33.5 bits (75), Expect = 0.085
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 63 SASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSISWS 122
SASS SS SRS S S+ SS+S S G +S +S + SSS S S S
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR---SSSSSSSSGS 123
Query: 123 LSPRRRTNSFQR 134
SP RR + +R
Sbjct: 124 PSPSRRRHDNRR 135
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 33.5 bits (75), Expect = 0.085
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 63 SASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSISWS 122
SASS SS SRS S S+ SS+S S G +S +S + SSS S S S
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR---SSSSSSSSGS 123
Query: 123 LSPRRRTNSFQR 134
SP RR + +R
Sbjct: 124 PSPSRRRHDNRR 135
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 33.5 bits (75), Expect = 0.085
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 63 SASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSISWS 122
SASS SS SRS S S+ SS+S S G +S +S + SSS S S S
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR---SSSSSSSSGS 123
Query: 123 LSPRRRTNSFQR 134
SP RR + +R
Sbjct: 124 PSPSRRRHDNRR 135
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 33.5 bits (75), Expect = 0.085
Identities = 29/72 (40%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 63 SASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSISWS 122
SASS SS SRS S S+ SS+S S G +S +S + SSS S S S
Sbjct: 67 SASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSR---SSSSSSSSGS 123
Query: 123 LSPRRRTNSFQR 134
SP RR + +R
Sbjct: 124 PSPSRRRHDNRR 135
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 33.5 bits (75), Expect = 0.085
Identities = 31/84 (36%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Query: 47 PHLRRLGAGG---RAAGPQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLY 103
P RR G GG R+ P+ SR SRS SRS S S + R R + S
Sbjct: 105 PPPRRYGGGGYGRRSRSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSR 164
Query: 104 CASRRQRPFCSSSRSISWSLSPRR 127
A R + S SRS S S S R
Sbjct: 165 SARRSKSKSSSVSRSRSRSRSRSR 188
>gi|122937219 F-box protein 41 [Homo sapiens]
Length = 936
Score = 33.1 bits (74), Expect = 0.11
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 13 LAPACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAGPQSASSMS 68
+AP PC+ P + R L++ PHLR LG GG G Q +S++
Sbjct: 779 VAPLHPCQQPT---------RFSNRCLQMIGRCWPHLRALGVGGAGCGVQGLASLA 825
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 32.7 bits (73), Expect = 0.14
Identities = 43/134 (32%), Positives = 55/134 (41%), Gaps = 17/134 (12%)
Query: 36 GRSLELPAGAQPHLRRLGAGGRAAG--PQSASSMSSRQPSRSMSRSTRP----SSSSVAS 89
GRS G + H R GR+ P SR P+R SRS P S S +
Sbjct: 552 GRSRSARRG-RSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPA 610
Query: 90 RRG--------VRRLQVASMLYCASRRQRPFCSSSRSISWSLSPRRRTNSF--QRNGGTF 139
RRG RR + S + SR + P S RS S + + R R+ S R G +
Sbjct: 611 RRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSR 670
Query: 140 STTAYSVAGNSLSR 153
S T +G S SR
Sbjct: 671 SRTPARRSGRSRSR 684
Score = 29.3 bits (64), Expect = 1.6
Identities = 34/131 (25%), Positives = 52/131 (39%), Gaps = 4/131 (3%)
Query: 7 APSRRLLAPACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAGPQSASS 66
+P R P R+P E + R + + P + GR+ P+
Sbjct: 1713 SPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRR--SASSPRTKTTSRRGRSPSPKPRGL 1770
Query: 67 MSSRQPSR-SMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSISWSLSP 125
SR SR +R+TR S +S+ RR Q + +RR+R S S S +
Sbjct: 1771 QRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGG-SGYHSRSPARQE 1829
Query: 126 RRRTNSFQRNG 136
RT+S +R G
Sbjct: 1830 SSRTSSRRRRG 1840
Score = 29.3 bits (64), Expect = 1.6
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 39 LELPAGAQPHLRRLGAGGRAAGPQSASSMSSRQPSRSMSRSTRPSSSSVAS 89
L +PA PH +G + G Q S++++ QP++ S+ SSSS +S
Sbjct: 2494 LSVPAPGVPH-SDVGEPPASTGAQQPSALAALQPAKERRSSSSSSSSSSSS 2543
Score = 26.9 bits (58), Expect = 7.9
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 56 GRAAGPQSAS-SMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCS 114
GR+ PQ S S ++P S SR+T+ S ++RRG + S R R
Sbjct: 523 GRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRG----RSHSRSPATRGRSRSRTP 578
Query: 115 SSRSISWSLSPRRR 128
+ R S S +P RR
Sbjct: 579 ARRGRSRSRTPARR 592
>gi|157785672 tetratricopeptide repeat domain 24 [Homo sapiens]
Length = 302
Score = 32.3 bits (72), Expect = 0.19
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 17/99 (17%)
Query: 2 YIEGLAPSRRLLAPACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAA-- 59
++ G LA +CP F K G + G++ G + HL +G G A
Sbjct: 208 FLPGTVNHSHHLASSCPT----FTKHTPCRGTVLGKASIYSPGPRAHLPFVGPGPPRAEY 263
Query: 60 -------GPQSASSMSSRQPSRSMSRS--TRPSSSSVAS 89
GPQ ++ SSR P S+SRS RP S + +
Sbjct: 264 PSILVPNGPQ--ANRSSRWPRESLSRSRQRRPMESGICT 300
>gi|88501738 TRIO and F-actin binding protein isoform 6 [Homo
sapiens]
Length = 2365
Score = 32.0 bits (71), Expect = 0.25
Identities = 34/128 (26%), Positives = 50/128 (39%), Gaps = 16/128 (12%)
Query: 20 RTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAGPQSASSMSSRQPSRSMSRS 79
R P + + GD AG+ E G GGR+AG A S RS
Sbjct: 189 RAPSLLTRSPVGGDAAGQKKE----------DTGGGGRSAGQHWARLRGESGLSLERHRS 238
Query: 80 TRPSSSSVASRRGVRRLQVASMLYCASRRQRPFCSSSRSISWSLSPRRRTNSFQRNGGTF 139
T +SS+ G R + ++R +S+R I + SP R T QR+
Sbjct: 239 TLTQASSMTPHSGPRS---TTSQASPAQRDTAQAASTREIPRASSPHRIT---QRDTSRA 292
Query: 140 STTAYSVA 147
S+T ++
Sbjct: 293 SSTQQEIS 300
>gi|176866318 hypothetical protein LOC646450 [Homo sapiens]
Length = 290
Score = 32.0 bits (71), Expect = 0.25
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 5 GLAPSRRLLAPACPCRTPPFQKKVGLEGDLAGRSLELPAGAQPHLRRLGAGGRAAGPQSA 64
G RR A A R ++ V ++ G LP +P + R+ G R G SA
Sbjct: 76 GAKRQRRRRADAGQARAASSRRVVPTAPEVLGAVASLPDRGRPTVARVATGSRLEGLFSA 135
Query: 65 SSMSSRQPSRSMSRSTRPSSSSVASRR 91
+S+ ++S++R + ++S A+ R
Sbjct: 136 ASLKLSALTQSLTRVRQAPTASGATIR 162
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 31.6 bits (70), Expect = 0.32
Identities = 25/55 (45%), Positives = 27/55 (49%), Gaps = 10/55 (18%)
Query: 42 PAGAQP----HLRRLGAGG----RAAGPQSASSMSSRQPSRSMSRST--RPSSSS 86
PA P H RR G G R+ GP S SSR PS+S SRS RP S S
Sbjct: 467 PASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRPHSPS 521
Score = 28.1 bits (61), Expect = 3.6
Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 37 RSLELPAGAQPHLRRL--GAGGRAAGPQSASSMSSRQP---SRSMSRSTRPSSSSVASRR 91
R+ E P A+P GA GR GP+ SS S P S S SRS S S A +R
Sbjct: 457 RAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKR 516
Score = 27.7 bits (60), Expect = 4.6
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 22/84 (26%)
Query: 53 GAGGRAAGPQSASSMSSRQPSRSMSRSTRPSSSSVASRRGVRRLQVASMLYCASRRQRPF 112
G GGRAAG + R+ R R SS+S RRG RR R P
Sbjct: 374 GRGGRAAGG------AGRRRRRRRRRRRSRSSASAPRRRGRRR-----------PRPAPP 416
Query: 113 CSSSRSISWSLSPRRRTNSFQRNG 136
SSRS+S R R++S +G
Sbjct: 417 RGSSRSLS-----RARSSSDSGSG 435
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.128 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,670,620
Number of Sequences: 37866
Number of extensions: 299057
Number of successful extensions: 2247
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 1915
Number of HSP's gapped (non-prelim): 355
length of query: 164
length of database: 18,247,518
effective HSP length: 94
effective length of query: 70
effective length of database: 14,688,114
effective search space: 1028167980
effective search space used: 1028167980
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.