Guide to the Human Genome
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Name: LOC100292268 Sequence: fasta or formatted (164aa) NCBI GI: 239755722
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         16           2
 C cysteine            3.0          5           1
 D aspartate           0.6          1           1
 E glutamate           1.8          3           1
 F phenylalanine       3.0          5           1
 G glycine             8.5         14           2
 H histidine           1.2          2           1
 I isoleucine          1.2          2           1
 K lysine              1.2          2           2
 L leucine             9.8         16           2
 M methionine          2.4          4           1
 N asparagine          1.8          3           1
 P proline             7.3         12           2
 Q glutamine           4.3          7           1
 R arginine           14.6         24           3
 S serine             19.5         32           4
 T threonine           3.7          6           2
 V valine              3.0          5           1
 W tryptophan          1.2          2           1
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100288159          1.000   PREDICTED: hypothetical protein 
LOC100288159          1.000   PREDICTED: hypothetical protein XP_002343179 
PPRC1                 0.063   peroxisome proliferator-activated receptor gamma, co...
SCAF1                 0.046   SR-related CTD-associated factor 1 
C1orf63               0.040   hypothetical protein LOC57035 
ZRANB2                0.036   zinc finger protein 265 isoform 1 
ZRANB2                0.036   zinc finger protein 265 isoform 2 
CHERP                 0.036   calcium homeostasis endoplasmic reticulum protein [...
RLIM                  0.033   ring finger protein, LIM domain interacting 
RLIM                  0.033   ring finger protein, LIM domain interacting 
HRH3                  0.033   histamine receptor H3 
SFRS16                0.033   splicing factor, arginine/serine-rich 16 
LOC643446             0.030   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.030   PREDICTED: similar to ribonucleic acid binding prot...
TNRC18                0.030   trinucleotide repeat containing 18 
RNPS1                 0.030   RNA-binding protein S1, serine-rich domain 
RNPS1                 0.030   RNA-binding protein S1, serine-rich domain 
RTN4                  0.026   reticulon 4 isoform A 
LOC643446             0.026   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.026   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.026   PREDICTED: similar to ribonucleic acid binding prot...
LOC643446             0.026   PREDICTED: similar to ribonucleic acid binding prote...
SFRS2                 0.026   splicing factor, arginine/serine-rich 2 
FBXO41                0.026   F-box protein 41 
SRRM2                 0.026   splicing coactivator subunit SRm300 
TTC24                 0.023   tetratricopeptide repeat domain 24 
TRIOBP                0.023   TRIO and F-actin binding protein isoform 6 
C3orf71               0.023   hypothetical protein LOC646450 
FLJ37078              0.023   hypothetical protein LOC222183 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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