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Search of human proteins with 116517330
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|116517330 factor in the germline alpha [Homo sapiens]
(219 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|116517330 factor in the germline alpha [Homo sapiens] 436 e-123
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H... 54 1e-07
gi|55743094 achaete-scute complex homolog 1 [Homo sapiens] 53 2e-07
gi|98986461 neurogenic differentiation 2 [Homo sapiens] 53 2e-07
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 53 2e-07
gi|206597481 achaete-scute complex-like 4 [Homo sapiens] 52 3e-07
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho... 52 3e-07
gi|116805332 musculin [Homo sapiens] 52 3e-07
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 52 4e-07
gi|4885075 atonal homolog 1 [Homo sapiens] 52 5e-07
gi|38202237 transcription factor 21 [Homo sapiens] 52 5e-07
gi|38202239 transcription factor 21 [Homo sapiens] 52 5e-07
gi|4507741 twist [Homo sapiens] 51 7e-07
gi|17981708 twist homolog 2 [Homo sapiens] 50 1e-06
gi|21553337 atonal homolog 7 [Homo sapiens] 50 1e-06
gi|148922889 scleraxis homolog B [Homo sapiens] 49 3e-06
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 49 3e-06
gi|186972126 scleraxis homolog A [Homo sapiens] 49 3e-06
gi|239752994 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 49 3e-06
gi|239747548 PREDICTED: achaete-scute complex homolog 5 (Drosoph... 49 3e-06
gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo sa... 49 3e-06
gi|156104906 myogenic factor 5 [Homo sapiens] 48 6e-06
gi|18765727 myogenin [Homo sapiens] 48 7e-06
gi|27475985 neurogenic differentiation 6 [Homo sapiens] 48 7e-06
gi|4505299 myogenic factor 6 [Homo sapiens] 47 1e-05
gi|121114306 neurogenic differentiation 1 [Homo sapiens] 47 1e-05
gi|31077092 neurogenin 2 [Homo sapiens] 47 1e-05
gi|226498192 atonal homolog 8 [Homo sapiens] 47 2e-05
gi|10190680 ASCL3 [Homo sapiens] 47 2e-05
gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens] 47 2e-05
>gi|116517330 factor in the germline alpha [Homo sapiens]
Length = 219
Score = 436 bits (1121), Expect = e-123
Identities = 219/219 (100%), Positives = 219/219 (100%)
Query: 1 MDPAPGVLDPRAAPPALLGTPQAEVLEDVLREQFGPLPQLAAVCRLKRLPSGGYSSTENL 60
MDPAPGVLDPRAAPPALLGTPQAEVLEDVLREQFGPLPQLAAVCRLKRLPSGGYSSTENL
Sbjct: 1 MDPAPGVLDPRAAPPALLGTPQAEVLEDVLREQFGPLPQLAAVCRLKRLPSGGYSSTENL 60
Query: 61 QLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDL 120
QLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDL
Sbjct: 61 QLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDL 120
Query: 121 LEGAKDSKKQDPDEQSYSNNSSESHTSSARQLSRNITQHISCAFGLKNEEEGPWADGGSG 180
LEGAKDSKKQDPDEQSYSNNSSESHTSSARQLSRNITQHISCAFGLKNEEEGPWADGGSG
Sbjct: 121 LEGAKDSKKQDPDEQSYSNNSSESHTSSARQLSRNITQHISCAFGLKNEEEGPWADGGSG 180
Query: 181 EPAHACRHSVMSTTEIISPTRSLDRFPEVELLSHRLPQV 219
EPAHACRHSVMSTTEIISPTRSLDRFPEVELLSHRLPQV
Sbjct: 181 EPAHACRHSVMSTTEIISPTRSLDRFPEVELLSHRLPQV 219
>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
sapiens]
Length = 217
Score = 53.5 bits (127), Expect = 1e-07
Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Query: 64 LERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEG 123
++RR AN KER R +++N FA L+ +P +P K SK+ L+ AT YI L DLL
Sbjct: 98 VKRRGTANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLL-- 155
Query: 124 AKDSKKQDPD 133
AKD + + +
Sbjct: 156 AKDDQNGEAE 165
>gi|55743094 achaete-scute complex homolog 1 [Homo sapiens]
Length = 236
Score = 53.1 bits (126), Expect = 2e-07
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 30 LREQFGPLPQLAAVCRLKRLPSGGYSSTENLQLVLERRRVANAKERERIKNLNRGFARLK 89
++ Q P+L R GYS + + RR N +ER R+K +N GFA L+
Sbjct: 86 VKRQRSSSPELMRCKRRLNFSGFGYSLPQQQPAAVARR---NERERNRVKLVNLGFATLR 142
Query: 90 ALVPFLPQSRKPSKVDILKGATEYIQVLSDLLE 122
VP ++K SKV+ L+ A EYI+ L LL+
Sbjct: 143 EHVPNGAANKKMSKVETLRSAVEYIRALQQLLD 175
>gi|98986461 neurogenic differentiation 2 [Homo sapiens]
Length = 382
Score = 53.1 bits (126), Expect = 2e-07
Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 12/161 (7%)
Query: 22 QAEVLEDVLREQFGPLPQLAAVCRLKRLPSGGYSSTENLQLVLERRRVANAKERERIKNL 81
+ E E+ L E G P+ KR P + L+ RR+ ANA+ER R+ +L
Sbjct: 85 EEEEEEEGLDEAEGERPK-------KRGPKKRKMTKARLERSKLRRQKANARERNRMHDL 137
Query: 82 NRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEGAKDSKKQDPDEQSYSNNS 141
N L+ +VP +++K SK++ L+ A YI LS++L K PD SY
Sbjct: 138 NAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGK-----RPDLVSYVQTL 192
Query: 142 SESHTSSARQLSRNITQHISCAFGLKNEEEGPWADGGSGEP 182
+ + L Q S F + +G GSG P
Sbjct: 193 CKGLSQPTTNLVAGCLQLNSRNFLTEQGADGAGRFHGSGGP 233
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 53.1 bits (126), Expect = 2e-07
Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
Query: 62 LVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSD-L 120
+V+ +R+ ANA+ER+R +++N F L+ L+P P RK SK++ L+ A+ YI L++ L
Sbjct: 69 VVVRQRQAANARERDRTQSVNTAFTALRTLIPTEPVDRKLSKIETLRLASSYIAHLANVL 128
Query: 121 LEGAKDSKKQDPDEQSYSNNSSESHTSSARQLSRNITQHISCAFGLKNEEEGPWADGGSG 180
L G Q + S + + + R+I C F L N+ +G GG
Sbjct: 129 LLGDSADDGQPCFRAAGSAKGAVPAAADGGRQPRSI-----CTFCLSNQRKG----GGRR 179
Query: 181 EPAHAC 186
+ +C
Sbjct: 180 DLGGSC 185
>gi|206597481 achaete-scute complex-like 4 [Homo sapiens]
Length = 173
Score = 52.4 bits (124), Expect = 3e-07
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 19/150 (12%)
Query: 10 PRAAPPALLGTPQAEVLEDVLREQFGPLPQLAAVCRLKRLPSGGYSSTENLQLVLERR-- 67
P P L G P+ + L LR L A C + SG + L + L+
Sbjct: 21 PLGVPGTLPGLPRRDPLRVALR--------LDAAC-WEWARSGCARGWQYLPVPLDSAFE 71
Query: 68 ----RVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLE- 122
R N +ER+R++ +N G+ARL+ +P ++ SKV+ L+ A +YI+ L +LLE
Sbjct: 72 PAFLRKRNERERQRVRCVNEGYARLRDHLPRELADKRLSKVETLRAAIDYIKHLQELLER 131
Query: 123 ---GAKDSKKQDPDEQSYSNNSSESHTSSA 149
G + + P ++ N+ ES SSA
Sbjct: 132 QAWGLEGAAGAVPQRRAECNSDGESKASSA 161
>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
sapiens]
Length = 215
Score = 52.4 bits (124), Expect = 3e-07
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 4/87 (4%)
Query: 73 KERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEGAKDSKKQDP 132
KER R +++N FA L+ +P +P K SK+ L+ AT YI L D+L AKD++ DP
Sbjct: 102 KERRRTESINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDVL--AKDAQSGDP 159
Query: 133 DEQSYSNNSSESHTSSARQLSRNITQH 159
+ ++ S R+ R + QH
Sbjct: 160 EAFKAELKKADGGRESKRK--RELQQH 184
>gi|116805332 musculin [Homo sapiens]
Length = 206
Score = 52.4 bits (124), Expect = 3e-07
Identities = 32/76 (42%), Positives = 48/76 (63%), Gaps = 4/76 (5%)
Query: 47 KRLPSGGYSSTENLQLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDI 106
K LP+ G S+ E Q +R ANA+ER R++ L++ F+RLK +P++P K SK+D
Sbjct: 93 KPLPAKG-SAAECKQ---SQRNAANARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDT 148
Query: 107 LKGATEYIQVLSDLLE 122
L+ A+ YI L LL+
Sbjct: 149 LRLASSYIAHLRQLLQ 164
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 52.0 bits (123), Expect = 4e-07
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 4 APGVLDPRAAPPALLGTPQAEVLEDVLREQFGP---LPQLAAVCRLKRLPSG-GYSSTEN 59
+P L AAP L ++ L + FG P R+KR PS T+
Sbjct: 122 SPPALAAPAAPGRALLYSLSQPLASLGSGFFGEPDAFPMFTTNNRVKRRPSPYEMEITDG 181
Query: 60 LQLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSD 119
+ RR N++ER R +N+N FA L+ L+P P +K SK +IL+ A +YI L+
Sbjct: 182 PHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAK 241
Query: 120 LLEGAKDSKKQ 130
LL ++ Q
Sbjct: 242 LLNDQEEEGTQ 252
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 51.6 bits (122), Expect = 5e-07
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 4/106 (3%)
Query: 44 CRLKRLPSGGYSSTENLQLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSK 103
C +R PS S + + +RR ANA+ER R+ LN F +L+ ++P +K SK
Sbjct: 142 CSRQRAPS----SKQVNGVQKQRRLAANARERRRMHGLNHAFDQLRNVIPSFNNDKKLSK 197
Query: 104 VDILKGATEYIQVLSDLLEGAKDSKKQDPDEQSYSNNSSESHTSSA 149
+ L+ A YI LS+LL+ ++ P S ++ T+++
Sbjct: 198 YETLQMAQIYINALSELLQTPSGGEQPPPPPASCKSDHHHLRTAAS 243
>gi|38202237 transcription factor 21 [Homo sapiens]
Length = 179
Score = 51.6 bits (122), Expect = 5e-07
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 47 KRLPSGGYSSTENLQLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDI 106
K+ P G S E Q+ +R ANA+ER R++ L++ F+RLK +P++P K SK+D
Sbjct: 65 KKSPLSGVSQ-EGKQV---QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT 120
Query: 107 LKGATEYIQVLSDLLEGAK 125
L+ A+ YI L +L K
Sbjct: 121 LRLASSYIAHLRQILANDK 139
>gi|38202239 transcription factor 21 [Homo sapiens]
Length = 179
Score = 51.6 bits (122), Expect = 5e-07
Identities = 31/79 (39%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 47 KRLPSGGYSSTENLQLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDI 106
K+ P G S E Q+ +R ANA+ER R++ L++ F+RLK +P++P K SK+D
Sbjct: 65 KKSPLSGVSQ-EGKQV---QRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDT 120
Query: 107 LKGATEYIQVLSDLLEGAK 125
L+ A+ YI L +L K
Sbjct: 121 LRLASSYIAHLRQILANDK 139
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 51.2 bits (121), Expect = 7e-07
Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Query: 51 SGGYSSTENLQLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGA 110
S G S ++ + + +R +AN +ER+R ++LN FA L+ ++P LP S K SK+ LK A
Sbjct: 94 SSGGGSPQSYEELQTQRVMANVRERQRTQSLNEAFAALRKIIPTLP-SDKLSKIQTLKLA 152
Query: 111 TEYIQVLSDLLEGAK-DSK 128
YI L +L+ + DSK
Sbjct: 153 ARYIDFLYQVLQSDELDSK 171
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 50.4 bits (119), Expect = 1e-06
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 53 GYSSTENLQLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATE 112
G S ++ + + +R +AN +ER+R ++LN FA L+ ++P LP S K SK+ LK A
Sbjct: 54 GSPSAQSFEELQSQRILANVRERQRTQSLNEAFAALRKIIPTLP-SDKLSKIQTLKLAAR 112
Query: 113 YIQVLSDLLEGAKDSKK 129
YI L +L+ + K
Sbjct: 113 YIDFLYQVLQSDEMDNK 129
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 50.4 bits (119), Expect = 1e-06
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 51 SGGYSSTENLQLVLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGA 110
+G + L+ RR ANA+ER R++ LN F RL+ +VP Q +K SK + L+ A
Sbjct: 26 AGTCAGAGRLESAARRRLAANARERRRMQGLNTAFDRLRRVVPQWGQDKKLSKYETLQMA 85
Query: 111 TEYIQVLSDLLEGAK 125
YI L+ +L A+
Sbjct: 86 LSYIMALTRILAEAE 100
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 49.3 bits (116), Expect = 3e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 66 RRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLL 121
+R ANA+ER+R ++N F L+ L+P P RK SK++ L+ A+ YI L ++L
Sbjct: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 49.3 bits (116), Expect = 3e-06
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 67 RRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLE 122
R+ AN +ER R++++N F L++ +P LP ++ SKVD L+ A YI LS+L++
Sbjct: 165 RQAANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLSELVQ 220
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 49.3 bits (116), Expect = 3e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 66 RRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLL 121
+R ANA+ER+R ++N F L+ L+P P RK SK++ L+ A+ YI L ++L
Sbjct: 76 QRHTANARERDRTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHLGNVL 131
>gi|239752994 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 48.9 bits (115), Expect = 3e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 71 NAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEGAKD 126
N +ER+R+K +N G+ARL+ +P ++ SKV+ L+ A YI+ L +LL A D
Sbjct: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPD 251
>gi|239747548 PREDICTED: achaete-scute complex homolog 5
(Drosophila) [Homo sapiens]
Length = 313
Score = 48.9 bits (115), Expect = 3e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 71 NAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEGAKD 126
N +ER+R+K +N G+ARL+ +P ++ SKV+ L+ A YI+ L +LL A D
Sbjct: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPD 251
>gi|239741422 PREDICTED: achaete-scute complex homolog 5 [Homo
sapiens]
Length = 313
Score = 48.9 bits (115), Expect = 3e-06
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 71 NAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEGAKD 126
N +ER+R+K +N G+ARL+ +P ++ SKV+ L+ A YI+ L +LL A D
Sbjct: 196 NERERQRVKCVNEGYARLRGHLPGALAEKRLSKVETLRAAIRYIKYLQELLSSAPD 251
>gi|156104906 myogenic factor 5 [Homo sapiens]
Length = 255
Score = 48.1 bits (113), Expect = 6e-06
Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 64 LERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEG 123
++RR+ A +ER R+K +N+ F LK P R P KV+IL+ A YI+ L +LL
Sbjct: 82 MDRRKAATMRERRRLKKVNQAFETLKRCTTTNPNQRLP-KVEILRNAIRYIESLQELLRE 140
Query: 124 AKDSKKQDPDEQSYSNNSSESHTS 147
++ P + S S+ S
Sbjct: 141 QVENYYSLPGQSCSEPTSPTSNCS 164
>gi|18765727 myogenin [Homo sapiens]
Length = 224
Score = 47.8 bits (112), Expect = 7e-06
Identities = 34/112 (30%), Positives = 49/112 (43%), Gaps = 13/112 (11%)
Query: 64 LERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEG 123
++RRR A +E+ R+K +N F LK P R P KV+IL+ A +YI+ L LL
Sbjct: 80 VDRRRAATLREKRRLKKVNEAFEALKRSTLLNPNQRLP-KVEILRSAIQYIERLQALLSS 138
Query: 124 AKDSKKQ------------DPDEQSYSNNSSESHTSSARQLSRNITQHISCA 163
++ P E S + S SA + S N H+ A
Sbjct: 139 LNQEERDLRYRGGGGPQPGVPSECSSHSASCSPEWGSALEFSANPGDHLLTA 190
>gi|27475985 neurogenic differentiation 6 [Homo sapiens]
Length = 337
Score = 47.8 bits (112), Expect = 7e-06
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 7/106 (6%)
Query: 20 TPQAEVLEDVLREQFGPLPQLAAVCRLKRLPSGGYSSTENLQLVLERRRVANAKERERIK 79
T + E ED E LP+ + + K ++ L+ V RR+ ANA+ER R+
Sbjct: 56 TEKEEEEEDREEEDENGLPRRRGLRKKK-------TTKLRLERVKFRRQEANARERNRMH 108
Query: 80 NLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEGAK 125
LN L+ +VP +++K SK++ L+ A YI LS++L K
Sbjct: 109 GLNDALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRIGK 154
>gi|4505299 myogenic factor 6 [Homo sapiens]
Length = 242
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 65 ERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEGA 124
+RR+ A +ER R+K +N F LK P R P KV+IL+ A YI+ L DLL
Sbjct: 93 DRRKAATLRERRRLKKINEAFEALKRRTVANPNQRLP-KVEILRSAISYIERLQDLLHRL 151
Query: 125 KDSKK 129
+K
Sbjct: 152 DQQEK 156
>gi|121114306 neurogenic differentiation 1 [Homo sapiens]
Length = 356
Score = 47.4 bits (111), Expect = 1e-05
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 66 RRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEGAK 125
RR ANA+ER R+ LN L+ +VP +++K SK++ L+ A YI LS++L K
Sbjct: 102 RRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILRSGK 161
>gi|31077092 neurogenin 2 [Homo sapiens]
Length = 272
Score = 47.4 bits (111), Expect = 1e-05
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 48 RLPSGGYSSTENLQLVLERRRV-ANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDI 106
R S G + E +Q + + RR+ AN +ER R+ NLN L+ ++P P+ K +K++
Sbjct: 94 RAVSRGAKTAETVQRIKKTRRLKANNRERNRMHNLNAALDALREVLPTFPEDAKLTKIET 153
Query: 107 LKGATEYIQVLSDLL 121
L+ A YI L++ L
Sbjct: 154 LRFAHNYIWALTETL 168
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 46.6 bits (109), Expect = 2e-05
Identities = 37/120 (30%), Positives = 54/120 (45%), Gaps = 4/120 (3%)
Query: 3 PAPGVLDPRAAPPALLGTPQAEVLEDVLREQFGPLPQLAAVCRLKRLPSGGYSSTENLQL 62
PAP R APP G + V+ Q ++ KR +S+E L
Sbjct: 172 PAPPESTVRPAPPTRPGESSYSSISHVIYNNH----QDSSASPRKRPGEATAASSEIKAL 227
Query: 63 VLERRRVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLE 122
RR +ANA+ER R+ ++ F L+ VP +K SK+ IL+ A YI L+ L +
Sbjct: 228 QQTRRLLANARERTRVHTISAAFEALRKQVPCYSYGQKLSKLAILRIACNYILSLARLAD 287
>gi|10190680 ASCL3 [Homo sapiens]
Length = 181
Score = 46.6 bits (109), Expect = 2e-05
Identities = 26/78 (33%), Positives = 43/78 (55%)
Query: 68 RVANAKERERIKNLNRGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLLEGAKDS 127
R N +ER+R+K +N G+A+L+ +P ++ SKV+ L+ A +YI L LL K
Sbjct: 96 RKRNERERQRVKCVNEGYAQLRHHLPEEYLEKRLSKVETLRAAIKYINYLQSLLYPDKAE 155
Query: 128 KKQDPDEQSYSNNSSESH 145
K +P + S ++ H
Sbjct: 156 TKNNPGKVSSMIATTSHH 173
>gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]
Length = 193
Score = 46.6 bits (109), Expect = 2e-05
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 17/99 (17%)
Query: 36 PLPQLAAVCRLKRLPSGGYSSTENLQLVLERRRVA-------------NAKERERIKNLN 82
P P + C +R P+ S E L+ RR N +ER R+K +N
Sbjct: 12 PAPPVPVGCAARRRPA----SPELLRCSRRRRPATAETGGGAAAVARRNERERNRVKLVN 67
Query: 83 RGFARLKALVPFLPQSRKPSKVDILKGATEYIQVLSDLL 121
GF L+ VP S+K SKV+ L+ A EYI+ L LL
Sbjct: 68 LGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRLL 106
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.131 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,199,019
Number of Sequences: 37866
Number of extensions: 427317
Number of successful extensions: 1419
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1321
Number of HSP's gapped (non-prelim): 127
length of query: 219
length of database: 18,247,518
effective HSP length: 98
effective length of query: 121
effective length of database: 14,536,650
effective search space: 1758934650
effective search space used: 1758934650
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.