Search of human proteins with 239744148

Search of human proteins with 239744148

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239744148 PREDICTED: hypothetical protein LOC642538 [Homo
sapiens]
         (142 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239744148 PREDICTED: hypothetical protein LOC642538 [Homo sap...   283   3e-77
gi|169198899 PREDICTED: similar to hCG1791993 [Homo sapiens]          281   1e-76
gi|239755365 PREDICTED: similar to hCG1791993 [Homo sapiens]          280   4e-76
gi|113422056 PREDICTED: similar to nuclear DNA-binding protein [...   266   3e-72
gi|113421639 PREDICTED: similar to nuclear DNA-binding protein [...   266   3e-72
gi|27894373 nuclear DNA-binding protein [Homo sapiens]                263   5e-71
gi|5453583 nuclear DNA-binding protein [Homo sapiens]                 263   5e-71
gi|124249396 coiled-coil domain containing 30 [Homo sapiens]           32   0.23 
gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13...    29   1.5  
gi|110611228 utrophin [Homo sapiens]                                   28   2.6  
gi|214010216 SMC6 protein [Homo sapiens]                               28   2.6  
gi|13375848 SMC6 protein [Homo sapiens]                                28   2.6  
gi|8923417 ADP-ribosylhydrolase like 2 [Homo sapiens]                  27   4.4  
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re...    27   7.4  
gi|155722985 SMC5 protein [Homo sapiens]                               26   9.7  
gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens]                26   9.7  

>gi|239744148 PREDICTED: hypothetical protein LOC642538 [Homo
           sapiens]
          Length = 142

 Score =  283 bits (725), Expect = 3e-77
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MMAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVS 60
           MMAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVS
Sbjct: 1   MMAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVS 60

Query: 61  AYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVR 120
           AYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVR
Sbjct: 61  AYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVR 120

Query: 121 NALWEPKPKNTSKVAHKGKSKS 142
           NALWEPKPKNTSKVAHKGKSKS
Sbjct: 121 NALWEPKPKNTSKVAHKGKSKS 142


>gi|169198899 PREDICTED: similar to hCG1791993 [Homo sapiens]
          Length = 142

 Score =  281 bits (720), Expect = 1e-76
 Identities = 141/142 (99%), Positives = 141/142 (99%)

Query: 1   MMAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVS 60
           MMAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVS
Sbjct: 1   MMAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVS 60

Query: 61  AYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVR 120
           AYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVR
Sbjct: 61  AYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVR 120

Query: 121 NALWEPKPKNTSKVAHKGKSKS 142
           NALWEPKPKN SKVAHKGKSKS
Sbjct: 121 NALWEPKPKNASKVAHKGKSKS 142


>gi|239755365 PREDICTED: similar to hCG1791993 [Homo sapiens]
          Length = 141

 Score =  280 bits (715), Expect = 4e-76
 Identities = 140/141 (99%), Positives = 140/141 (99%)

Query: 2   MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 61
           MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA
Sbjct: 1   MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 60

Query: 62  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 121
           YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN
Sbjct: 61  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 120

Query: 122 ALWEPKPKNTSKVAHKGKSKS 142
           ALWEPKPKN SKVAHKGKSKS
Sbjct: 121 ALWEPKPKNASKVAHKGKSKS 141


>gi|113422056 PREDICTED: similar to nuclear DNA-binding protein
           [Homo sapiens]
          Length = 157

 Score =  266 bits (681), Expect = 3e-72
 Identities = 134/140 (95%), Positives = 135/140 (96%)

Query: 3   AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY 62
           AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY
Sbjct: 18  AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY 77

Query: 63  TLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRNA 122
            LNSMFW YLATQGVNPKEH VKQELERIRVYMNRVKEI DKKKAGKLDRGAASRFVRNA
Sbjct: 78  ILNSMFWAYLATQGVNPKEHSVKQELERIRVYMNRVKEIADKKKAGKLDRGAASRFVRNA 137

Query: 123 LWEPKPKNTSKVAHKGKSKS 142
           LWEPKPKN SKVA+KGKSKS
Sbjct: 138 LWEPKPKNASKVAYKGKSKS 157


>gi|113421639 PREDICTED: similar to nuclear DNA-binding protein
           [Homo sapiens]
          Length = 157

 Score =  266 bits (681), Expect = 3e-72
 Identities = 134/140 (95%), Positives = 135/140 (96%)

Query: 3   AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY 62
           AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY
Sbjct: 18  AAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAY 77

Query: 63  TLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRNA 122
            LNSMFW YLATQGVNPKEH VKQELERIRVYMNRVKEI DKKKAGKLDRGAASRFVRNA
Sbjct: 78  ILNSMFWAYLATQGVNPKEHSVKQELERIRVYMNRVKEIADKKKAGKLDRGAASRFVRNA 137

Query: 123 LWEPKPKNTSKVAHKGKSKS 142
           LWEPKPKN SKVA+KGKSKS
Sbjct: 138 LWEPKPKNASKVAYKGKSKS 157


>gi|27894373 nuclear DNA-binding protein [Homo sapiens]
          Length = 141

 Score =  263 bits (671), Expect = 5e-71
 Identities = 132/141 (93%), Positives = 135/141 (95%)

Query: 2   MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 61
           MA EEINEDYPVEIH+YLSAF NSI AVDEMLK MMSVSRNELLQKLDPLEQAKVDLVSA
Sbjct: 1   MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 60

Query: 62  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 121
           YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFV+N
Sbjct: 61  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 120

Query: 122 ALWEPKPKNTSKVAHKGKSKS 142
           ALWEPK KN SKVA+KGKSKS
Sbjct: 121 ALWEPKSKNASKVANKGKSKS 141


>gi|5453583 nuclear DNA-binding protein [Homo sapiens]
          Length = 141

 Score =  263 bits (671), Expect = 5e-71
 Identities = 132/141 (93%), Positives = 135/141 (95%)

Query: 2   MAAEEINEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLDPLEQAKVDLVSA 61
           MA EEINEDYPVEIH+YLSAF NSI AVDEMLK MMSVSRNELLQKLDPLEQAKVDLVSA
Sbjct: 1   MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA 60

Query: 62  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVRN 121
           YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFV+N
Sbjct: 61  YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN 120

Query: 122 ALWEPKPKNTSKVAHKGKSKS 142
           ALWEPK KN SKVA+KGKSKS
Sbjct: 121 ALWEPKSKNASKVANKGKSKS 141


>gi|124249396 coiled-coil domain containing 30 [Homo sapiens]
          Length = 783

 Score = 31.6 bits (70), Expect = 0.23
 Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 40  SRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVK 99
           S  EL +KL  L+Q K  L   Y L  +  + +  +  N K H  K +L++++  +    
Sbjct: 465 SNQELSEKLSKLQQEKEALREEY-LRLLKLLNVHVRNYNEKHHQQKVKLQKVKYRLTNEV 523

Query: 100 EITDKK 105
           E+ DK+
Sbjct: 524 ELRDKR 529


>gi|31657092 ATP binding cassette, sub-family A (ABC1), member 13
            [Homo sapiens]
          Length = 5058

 Score = 28.9 bits (63), Expect = 1.5
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)

Query: 7    INEDYPVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKLD 49
            I+ED+ + +  Y+S F NS  +V+++L N   +S N+ +  ++
Sbjct: 1071 IDEDFRISLFQYMSQFFNS--SVEDLLDNKCLISDNKHISSVN 1111


>gi|110611228 utrophin [Homo sapiens]
          Length = 3433

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 17   DYLSAFANSIDAVDEMLKNMMSVSRN 42
            D  SAF N I+ ++  LKNM  +  N
Sbjct: 1057 DQCSAFVNEIETIESSLKNMKEIETN 1082


>gi|214010216 SMC6 protein [Homo sapiens]
          Length = 1091

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 30  DEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELE 89
           DE L   +   +    Q L+P    +   +S        W+    +    +E+ V QE+E
Sbjct: 381 DEQLCKRIEELKKSTDQSLEPERLERQKKIS--------WLKERVKAFQNQENSVNQEIE 432

Query: 90  RIRVYMNRVKEITDKKKAGKLDRGAASRFVRNALWEPKPKNTSKVAHKG 138
           + +  + + KE   K K  +LD   A  + +  L E K   T ++   G
Sbjct: 433 QFQQAIEKDKEEHGKIKREELDVKHALSYNQRQLKELKDSKTDRLKRFG 481


>gi|13375848 SMC6 protein [Homo sapiens]
          Length = 1091

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 25/109 (22%), Positives = 44/109 (40%), Gaps = 8/109 (7%)

Query: 30  DEMLKNMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELE 89
           DE L   +   +    Q L+P    +   +S        W+    +    +E+ V QE+E
Sbjct: 381 DEQLCKRIEELKKSTDQSLEPERLERQKKIS--------WLKERVKAFQNQENSVNQEIE 432

Query: 90  RIRVYMNRVKEITDKKKAGKLDRGAASRFVRNALWEPKPKNTSKVAHKG 138
           + +  + + KE   K K  +LD   A  + +  L E K   T ++   G
Sbjct: 433 QFQQAIEKDKEEHGKIKREELDVKHALSYNQRQLKELKDSKTDRLKRFG 481


>gi|8923417 ADP-ribosylhydrolase like 2 [Homo sapiens]
          Length = 363

 Score = 27.3 bits (59), Expect = 4.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)

Query: 70  VYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASR 117
           V+LA QG +  EH +KQ L  +       + + D ++ G  +R  +SR
Sbjct: 198 VHLALQGESSSEHFLKQLLGHMEDLEGDAQSVLDARELGMEERPYSSR 245


>gi|38569493 potassium voltage-gated channel, subfamily H
           (eag-related), member 3 [Homo sapiens]
          Length = 1083

 Score = 26.6 bits (57), Expect = 7.4
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 41  RNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKE 100
           R ++ + LD  ++ K +L+        FW  L          P+K E   + +++   K+
Sbjct: 80  RQQIRKALDEHKEFKAELILYRKSGLPFWCLLDVI-------PIKNEKGEVALFLVSHKD 132

Query: 101 ITDKKKAGKLDR 112
           I++ K  G  DR
Sbjct: 133 ISETKNRGGPDR 144


>gi|155722985 SMC5 protein [Homo sapiens]
          Length = 1101

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 5/102 (4%)

Query: 12  PVEIHDYLSAFANSIDAVDEMLKNMMSVSRNELLQKL-DPLEQAKVDLVSAYTLNSMFWV 70
           P E+H Y     N  +   ++  +     + E LQK+    E+ K D+   Y       +
Sbjct: 205 PPEMHKYHCELKNLREKEKQLETSCKE--KTEYLQKMVQRNERYKQDVERFYERKRHLDL 262

Query: 71  YLATQGVNP--KEHPVKQELERIRVYMNRVKEITDKKKAGKL 110
               +   P  +   V+QE E +++  +RVKE   K K G++
Sbjct: 263 IEMLEAKRPWVEYENVRQEYEEVKLVRDRVKEEVRKLKEGQI 304


>gi|112380630 leiomodin 1 (smooth muscle) [Homo sapiens]
          Length = 600

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 5/38 (13%)

Query: 76  GVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRG 113
           G  PKE  + + +++      RV+   DKK+AGK  RG
Sbjct: 146 GEKPKEEKIIRGIDK-----GRVRAAVDKKEAGKDGRG 178


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,567,114
Number of Sequences: 37866
Number of extensions: 158250
Number of successful extensions: 383
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 372
Number of HSP's gapped (non-prelim): 16
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.