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Search of human proteins with 239744137
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744137 PREDICTED: hypothetical protein XP_002343043 [Homo
sapiens]
(61 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744137 PREDICTED: hypothetical protein XP_002343043 [Homo ... 130 2e-31
gi|239747873 PREDICTED: hypothetical protein XP_002346456 [Homo ... 126 4e-30
gi|114155127 regulator of G-protein signalling 3 isoform 6 [Homo... 28 1.6
gi|10864075 regulator of G-protein signalling 3 isoform 2 [Homo ... 28 1.6
gi|62865651 regulator of G-protein signalling 3 isoform 1 [Homo ... 28 1.6
gi|4826726 fibroblast growth factor 19 precursor [Homo sapiens] 28 1.6
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|208431824 forkhead box I3 [Homo sapiens] 28 1.6
gi|58218984 single stranded DNA binding protein 4 isoform b [Hom... 28 1.6
gi|84570137 homeobox B3 [Homo sapiens] 28 1.6
gi|14249150 single stranded DNA binding protein 4 isoform a [Hom... 28 1.6
gi|226495417 coiled-coil domain containing 102A [Homo sapiens] 28 2.1
gi|169214712 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239755294 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|169164003 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens] 27 2.7
gi|239749787 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|113413791 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|239744047 PREDICTED: hypothetical protein [Homo sapiens] 27 2.7
gi|21687188 hypothetical protein LOC146325 [Homo sapiens] 27 2.7
gi|14790170 tumor necrosis factor receptor superfamily, member 6... 27 3.5
gi|4507585 tumor necrosis factor receptor superfamily, member 6b... 27 3.5
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens] 27 3.5
gi|239753290 PREDICTED: hypothetical protein XP_002345611 [Homo ... 27 3.5
gi|239747859 PREDICTED: hypothetical protein [Homo sapiens] 27 3.5
gi|239741741 PREDICTED: hypothetical protein XP_002342309 [Homo ... 27 3.5
gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I... 27 3.5
gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I... 27 3.5
gi|148886716 downstream of Stk11 [Homo sapiens] 27 3.5
gi|239753114 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
>gi|239744137 PREDICTED: hypothetical protein XP_002343043 [Homo
sapiens]
Length = 61
Score = 130 bits (327), Expect = 2e-31
Identities = 61/61 (100%), Positives = 61/61 (100%)
Query: 1 MPRARPGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPPISLFIPA 60
MPRARPGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPPISLFIPA
Sbjct: 1 MPRARPGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPPISLFIPA 60
Query: 61 A 61
A
Sbjct: 61 A 61
>gi|239747873 PREDICTED: hypothetical protein XP_002346456 [Homo
sapiens]
Length = 61
Score = 126 bits (316), Expect = 4e-30
Identities = 58/61 (95%), Positives = 60/61 (98%)
Query: 1 MPRARPGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPPISLFIPA 60
MPRARPGLRLPTGSA APGRPSVHCAGQFDSRAPYSASSAPS+GRWPSRGFPP+SLFIPA
Sbjct: 1 MPRARPGLRLPTGSATAPGRPSVHCAGQFDSRAPYSASSAPSQGRWPSRGFPPMSLFIPA 60
Query: 61 A 61
A
Sbjct: 61 A 61
>gi|114155127 regulator of G-protein signalling 3 isoform 6 [Homo
sapiens]
Length = 1198
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 6 PGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSA-SSAPSEGRWPSRGFPP 53
PG LP G + P + S S+ P S+ SA SEG P PP
Sbjct: 712 PGQELPPGQDLPPNKDSPSGQEPAPSQEPLSSKDSATSEGSPPGPDAPP 760
>gi|10864075 regulator of G-protein signalling 3 isoform 2 [Homo
sapiens]
Length = 519
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 6 PGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSA-SSAPSEGRWPSRGFPP 53
PG LP G + P + S S+ P S+ SA SEG P PP
Sbjct: 33 PGQELPPGQDLPPNKDSPSGQEPAPSQEPLSSKDSATSEGSPPGPDAPP 81
>gi|62865651 regulator of G-protein signalling 3 isoform 1 [Homo
sapiens]
Length = 917
Score = 28.1 bits (61), Expect = 1.6
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 6 PGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSA-SSAPSEGRWPSRGFPP 53
PG LP G + P + S S+ P S+ SA SEG P PP
Sbjct: 431 PGQELPPGQDLPPNKDSPSGQEPAPSQEPLSSKDSATSEGSPPGPDAPP 479
>gi|4826726 fibroblast growth factor 19 precursor [Homo sapiens]
Length = 216
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 32 RAPYSASSAPSEGRWPSRGFPPISLFIP 59
R P S SSA + +RGF P+S F+P
Sbjct: 140 RLPVSLSSAKQRQLYKNRGFLPLSHFLP 167
>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 350
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 11 PTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPPISLFIP 59
P G A +P RP V+ Q+ SRA + SA S S FPP P
Sbjct: 13 PPGVAESPARPRVN--EQWGSRAHPNPRSASSAAAAASSSFPPPGFIHP 59
>gi|208431824 forkhead box I3 [Homo sapiens]
Length = 420
Score = 28.1 bits (61), Expect = 1.6
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 7/63 (11%)
Query: 4 ARPGLRLPTGSAIAPGRPSVHCA--GQFDSRAPYSASSAPSEGRW---PSRGFPPISLFI 58
++PGL P +A APG P A G D AP +A++ P W P G PP +
Sbjct: 13 SQPGLPPPAATAAAPGAPPAARAPYGLADYAAPPAAAANPY--LWLNGPGVGGPPSAAAA 70
Query: 59 PAA 61
AA
Sbjct: 71 AAA 73
>gi|58218984 single stranded DNA binding protein 4 isoform b [Homo
sapiens]
Length = 363
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 7 GLRLPTGSAIAPGRPSVHC--------AGQFDSRAPYSASSAPSEGRWPSRGFPPISLFI 58
G+R P S PG P+++ A + PYS+SS S P G PP + +
Sbjct: 195 GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM 254
Query: 59 PA 60
P+
Sbjct: 255 PS 256
>gi|84570137 homeobox B3 [Homo sapiens]
Length = 431
Score = 28.1 bits (61), Expect = 1.6
Identities = 20/49 (40%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 5 RPGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPP 53
RPGL P + PG P S AP SA+S S G PS+ PP
Sbjct: 75 RPGLA-PEPLSAPPGSPP-------PSAAPTSATSNSSNGGGPSKSGPP 115
>gi|14249150 single stranded DNA binding protein 4 isoform a [Homo
sapiens]
Length = 385
Score = 28.1 bits (61), Expect = 1.6
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 8/62 (12%)
Query: 7 GLRLPTGSAIAPGRPSVHC--------AGQFDSRAPYSASSAPSEGRWPSRGFPPISLFI 58
G+R P S PG P+++ A + PYS+SS S P G PP + +
Sbjct: 217 GMRPPPNSLAGPGLPAMNMGPGVRGPWASPSGNSIPYSSSSPGSYTGPPGGGGPPGTPIM 276
Query: 59 PA 60
P+
Sbjct: 277 PS 278
>gi|226495417 coiled-coil domain containing 102A [Homo sapiens]
Length = 550
Score = 27.7 bits (60), Expect = 2.1
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 2 PRARPGLRLPTGSAIAP-GRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPP 53
PR +L GS + G PS G DS P S PS G P+ PP
Sbjct: 7 PRLAESPQLSKGSLLTILGSPSPERMGPADSLPPTPPSGTPSPGPPPALPLPP 59
>gi|169214712 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 27.7 bits (60), Expect = 2.1
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Query: 13 GSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGR--WPSRGFPP 53
G +PGRPSV C D+ P +++ ++ R +PS F P
Sbjct: 10 GGVFSPGRPSVSC----DTPIPAASAQRGTKNRESYPSSAFQP 48
>gi|239755294 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 8 LRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPP 53
L+ PTG +A RP + + R +A+ S GR P PP
Sbjct: 100 LQGPTGFGVAAARPRGRSSSEMRRRDTRAAAGRASAGRVPYHRRPP 145
>gi|169164003 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 2 PRARPGLRLPTGSAIAPGRPS--VHCAGQFD---SRAPYSASSAPSE-GRWPSRGF 51
P+ARPG LP+ A+ P R S C + D A AP G W SRGF
Sbjct: 106 PQARPGHLLPSLEALTPTRVSWRRQCQERLDWDGDGEGCLARRAPLPLGTWQSRGF 161
>gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens]
Length = 642
Score = 27.3 bits (59), Expect = 2.7
Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 18/60 (30%)
Query: 11 PTGSAIA------PGRPSVH-----CAGQFDSRAPYSASSAPSEGRW-------PSRGFP 52
P GSA A P RP + CAGQ D+ Y + + P+ RW P R P
Sbjct: 251 PVGSAAACEMRPDPRRPHLPLPNSPCAGQVDAAHTYLSPTHPARERWTLSAPASPQRALP 310
>gi|239749787 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 8 LRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPP 53
L+ PTG +A RP + + R +A+ S GR P PP
Sbjct: 100 LQGPTGFGVAAARPRGRSSSEMRRRDTRAAAGRASAGRVPYHRRPP 145
>gi|113413791 PREDICTED: hypothetical protein [Homo sapiens]
Length = 176
Score = 27.3 bits (59), Expect = 2.7
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 2 PRARPGLRLPTGSAIAPGRPS--VHCAGQFD---SRAPYSASSAPSE-GRWPSRGF 51
P+ARPG LP+ A+ P R S C + D A AP G W SRGF
Sbjct: 106 PQARPGHLLPSLEALTPTRVSWRRQCQERLDWDGDGEGCLARRAPLPLGTWQSRGF 161
>gi|239744047 PREDICTED: hypothetical protein [Homo sapiens]
Length = 162
Score = 27.3 bits (59), Expect = 2.7
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 8 LRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPP 53
L+ PTG +A RP + + R +A+ S GR P PP
Sbjct: 100 LQGPTGFGVAAARPRGRSSSEMRRRDTRAAAGRASAGRVPYHRRPP 145
>gi|21687188 hypothetical protein LOC146325 [Homo sapiens]
Length = 571
Score = 27.3 bits (59), Expect = 2.7
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
Query: 2 PRARPGLRLPTGSAIAPGRP-----SVHCAGQFDSRAPYSASSAPSEGRWPSRGFPPISL 56
P +P PTG+A AP S+HC G SRA S P R +G P L
Sbjct: 98 PGRQPQGARPTGAAPAPDLVVADIHSLHCGGGPKSRAKGSPGPPPPVARATRKGPGPSGL 157
>gi|14790170 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 11 PTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPPISL 56
P IAPG PS + Q +SASS+ SE P R + L
Sbjct: 134 PGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGL 179
>gi|4507585 tumor necrosis factor receptor superfamily, member 6b
[Homo sapiens]
Length = 300
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 11 PTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPPISL 56
P IAPG PS + Q +SASS+ SE P R + L
Sbjct: 134 PGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQPHRNCTALGL 179
>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
Length = 2382
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 17 APGRPSVHCAGQFDSRAPYSASSAPSEGRWPSRGFPPISLFIPA 60
APG+ + AP SA+SA S G + PP PA
Sbjct: 2287 APGQLCISMTSNLGGSAPISAASATSLGHFTKSMCPPQQYGFPA 2330
>gi|239753290 PREDICTED: hypothetical protein XP_002345611 [Homo
sapiens]
Length = 144
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 1 MPRARPGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGR 45
+PR RP +RLP SA + + G + AP A + P + R
Sbjct: 85 VPRGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLR 129
>gi|239747859 PREDICTED: hypothetical protein [Homo sapiens]
Length = 595
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 1 MPRARPGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGR 45
+PR RP +RLP SA + + G + AP A + P + R
Sbjct: 536 VPRGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLR 580
>gi|239741741 PREDICTED: hypothetical protein XP_002342309 [Homo
sapiens]
Length = 404
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 1 MPRARPGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEGR 45
+PR RP +RLP SA + + G + AP A + P + R
Sbjct: 345 VPRGRPDVRLPVPSARSGAQRPAQGPGLRPAAAPRGAMAEPPDLR 389
>gi|51093859 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform b [Homo sapiens]
Length = 2188
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/15 (80%), Positives = 12/15 (80%)
Query: 6 PGLRLPTGSAIAPGR 20
PG RLPTGS APGR
Sbjct: 1725 PGPRLPTGSPGAPGR 1739
>gi|21361077 calcium channel, voltage-dependent, T type, alpha 1I
subunit isoform a [Homo sapiens]
Length = 2223
Score = 26.9 bits (58), Expect = 3.5
Identities = 12/15 (80%), Positives = 12/15 (80%)
Query: 6 PGLRLPTGSAIAPGR 20
PG RLPTGS APGR
Sbjct: 1760 PGPRLPTGSPGAPGR 1774
>gi|148886716 downstream of Stk11 [Homo sapiens]
Length = 447
Score = 26.9 bits (58), Expect = 3.5
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 4 ARPGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPSEG 44
AR G P + P RP G D+R+P S+ AP G
Sbjct: 387 ARGGPVGPCPPSPPPRRPRERSPGPVDTRSPASSGKAPPRG 427
>gi|239753114 PREDICTED: hypothetical protein [Homo sapiens]
Length = 322
Score = 26.6 bits (57), Expect = 4.6
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 2 PRAR-PGLRLPTGSAIAPGRPSVHCAGQFDSRAPYSASSAPS 42
PRA+ PG RL G + GR + SR+P++A +AP+
Sbjct: 261 PRAQHPGCRLRAGCEPSCGRLGRGYQQRLPSRSPHAAPAAPA 302
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,169,369
Number of Sequences: 37866
Number of extensions: 149377
Number of successful extensions: 719
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 699
Number of HSP's gapped (non-prelim): 35
length of query: 61
length of database: 18,247,518
effective HSP length: 34
effective length of query: 27
effective length of database: 16,960,074
effective search space: 457921998
effective search space used: 457921998
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.