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Search of human proteins with 239744008
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239744008 PREDICTED: hypothetical protein XP_002343016
isoform 2 [Homo sapiens]
(274 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239744008 PREDICTED: hypothetical protein XP_002343016 isofor... 538 e-153
gi|150378481 hypothetical protein LOC653567 [Homo sapiens] 494 e-140
gi|239744006 PREDICTED: hypothetical protein XP_002343015 isofor... 494 e-140
gi|83367077 mucin 16 [Homo sapiens] 33 0.21
gi|239754514 PREDICTED: hypothetical protein [Homo sapiens] 33 0.21
gi|239749075 PREDICTED: hypothetical protein [Homo sapiens] 33 0.21
gi|239743101 PREDICTED: hypothetical protein [Homo sapiens] 33 0.21
gi|239508755 PREDICTED: hypothetical protein [Homo sapiens] 33 0.21
gi|166795283 glucagon-like peptide 1 receptor [Homo sapiens] 33 0.35
gi|209862994 MAP-kinase activating death domain-containing prote... 32 0.46
gi|18860873 MAP-kinase activating death domain-containing protei... 32 0.46
gi|239755573 PREDICTED: similar to ectonucleotide pyrophosphatas... 32 0.78
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 31 1.3
gi|82659094 phosphatidic acid phosphatase type 2d isoform 1 [Hom... 30 2.3
gi|61102719 phosphatidic acid phosphatase type 2d isoform 2 [Hom... 30 2.3
gi|213512168 hypothetical protein LOC259308 [Homo sapiens] 29 3.9
gi|12383060 cytochrome P450, family 3, subfamily A, polypeptide ... 29 5.1
gi|16933535 cytochrome P450, family 3, subfamily A, polypeptide ... 29 5.1
gi|16933533 cytochrome P450, family 3, subfamily A, polypeptide ... 29 5.1
gi|197085610 histamine receptor H2 isoform 1 [Homo sapiens] 29 5.1
gi|13435405 histamine receptor H2 isoform 2 [Homo sapiens] 29 5.1
gi|22218339 hypothetical protein LOC90362 [Homo sapiens] 28 6.6
gi|119120892 hypothetical protein LOC57179 isoform a [Homo sapiens] 28 6.6
gi|119120888 hypothetical protein LOC57179 isoform b [Homo sapiens] 28 6.6
gi|19923827 hypothetical protein LOC57179 isoform a [Homo sapiens] 28 6.6
gi|55743071 ATPase, Cu++ transporting, beta polypeptide isoform ... 28 8.6
gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens] 28 8.6
gi|211971080 ataxin 7-like 1 isoform 3 [Homo sapiens] 28 8.6
gi|17998700 phosphatidylinositol glycan anchor biosynthesis, cla... 28 8.6
>gi|239744008 PREDICTED: hypothetical protein XP_002343016 isoform 2
[Homo sapiens]
Length = 274
Score = 538 bits (1385), Expect = e-153
Identities = 274/274 (100%), Positives = 274/274 (100%)
Query: 1 MASGRLIKFVVFELLEFAAFSIPTLVITEQFATAYQGTRARSDNTHYWLIISCSIAYVAL 60
MASGRLIKFVVFELLEFAAFSIPTLVITEQFATAYQGTRARSDNTHYWLIISCSIAYVAL
Sbjct: 1 MASGRLIKFVVFELLEFAAFSIPTLVITEQFATAYQGTRARSDNTHYWLIISCSIAYVAL 60
Query: 61 VTLLIWVPVKVILHKKRYIYRKIKGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSAD 120
VTLLIWVPVKVILHKKRYIYRKIKGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSAD
Sbjct: 61 VTLLIWVPVKVILHKKRYIYRKIKGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSAD 120
Query: 121 VLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVR 180
VLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVR
Sbjct: 121 VLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVR 180
Query: 181 QSPENAASPQATNSTQVSQPSGAMTRSQESVFMGPQEPSCDSGILRMMSRRDVRAELFLW 240
QSPENAASPQATNSTQVSQPSGAMTRSQESVFMGPQEPSCDSGILRMMSRRDVRAELFLW
Sbjct: 181 QSPENAASPQATNSTQVSQPSGAMTRSQESVFMGPQEPSCDSGILRMMSRRDVRAELFLW 240
Query: 241 SFLLWSDTIEMDFSHTVKEDLLTVVKSLPSSFLI 274
SFLLWSDTIEMDFSHTVKEDLLTVVKSLPSSFLI
Sbjct: 241 SFLLWSDTIEMDFSHTVKEDLLTVVKSLPSSFLI 274
>gi|150378481 hypothetical protein LOC653567 [Homo sapiens]
Length = 351
Score = 494 bits (1273), Expect = e-140
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MASGRLIKFVVFELLEFAAFSIPTLVITEQFATAYQGTRARSDNTHYWLIISCSIAYVAL 60
MASGRLIKFVVFELLEFAAFSIPTLVITEQFATAYQGTRARSDNTHYWLIISCSIAYVAL
Sbjct: 1 MASGRLIKFVVFELLEFAAFSIPTLVITEQFATAYQGTRARSDNTHYWLIISCSIAYVAL 60
Query: 61 VTLLIWVPVKVILHKKRYIYRKIKGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSAD 120
VTLLIWVPVKVILHKKRYIYRKIKGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSAD
Sbjct: 61 VTLLIWVPVKVILHKKRYIYRKIKGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSAD 120
Query: 121 VLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVR 180
VLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVR
Sbjct: 121 VLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVR 180
Query: 181 QSPENAASPQATNSTQVSQPSGAMTRSQESVFMGPQEPSCDSGILRMMSRRDVRAELFLW 240
QSPENAASPQATNSTQVSQPSGAMTRSQESVFMGPQEPSCDSGILRMMSRRDVRAELFLW
Sbjct: 181 QSPENAASPQATNSTQVSQPSGAMTRSQESVFMGPQEPSCDSGILRMMSRRDVRAELFLW 240
Query: 241 SFLLWSDTIEM 251
SFLLWSDTIEM
Sbjct: 241 SFLLWSDTIEM 251
>gi|239744006 PREDICTED: hypothetical protein XP_002343015 isoform 1
[Homo sapiens]
Length = 351
Score = 494 bits (1273), Expect = e-140
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MASGRLIKFVVFELLEFAAFSIPTLVITEQFATAYQGTRARSDNTHYWLIISCSIAYVAL 60
MASGRLIKFVVFELLEFAAFSIPTLVITEQFATAYQGTRARSDNTHYWLIISCSIAYVAL
Sbjct: 1 MASGRLIKFVVFELLEFAAFSIPTLVITEQFATAYQGTRARSDNTHYWLIISCSIAYVAL 60
Query: 61 VTLLIWVPVKVILHKKRYIYRKIKGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSAD 120
VTLLIWVPVKVILHKKRYIYRKIKGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSAD
Sbjct: 61 VTLLIWVPVKVILHKKRYIYRKIKGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSAD 120
Query: 121 VLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVR 180
VLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVR
Sbjct: 121 VLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVR 180
Query: 181 QSPENAASPQATNSTQVSQPSGAMTRSQESVFMGPQEPSCDSGILRMMSRRDVRAELFLW 240
QSPENAASPQATNSTQVSQPSGAMTRSQESVFMGPQEPSCDSGILRMMSRRDVRAELFLW
Sbjct: 181 QSPENAASPQATNSTQVSQPSGAMTRSQESVFMGPQEPSCDSGILRMMSRRDVRAELFLW 240
Query: 241 SFLLWSDTIEM 251
SFLLWSDTIEM
Sbjct: 241 SFLLWSDTIEM 251
>gi|83367077 mucin 16 [Homo sapiens]
Length = 14507
Score = 33.5 bits (75), Expect = 0.21
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 17/121 (14%)
Query: 96 LTTLPCLTFSIAVTEVQKSINGSADVLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPLRGS 155
LT+LP T S++ + L D P P L + SLI+ +++ +
Sbjct: 9730 LTSLPLTT----------SLSPVSSTLLDSSPSSP--LPVTSLILPGLVKTTEVLDTSSE 9777
Query: 156 QKSSENGHIHSTSLQ-----HIKTVTEQVRQSPENAASPQATNSTQVSQPSGAMTRSQES 210
K+S + ++ STS++ I T TE++ S A + T+S+ S + S+ +
Sbjct: 9778 PKTSSSPNLSSTSVEIPATSEIMTDTEKIHPSSNTAVAKVRTSSSVHESHSSVLADSETT 9837
Query: 211 V 211
+
Sbjct: 9838 I 9838
>gi|239754514 PREDICTED: hypothetical protein [Homo sapiens]
Length = 260
Score = 33.5 bits (75), Expect = 0.21
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 84 KGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSADVLPDMLPDLPVSLVLLSLIMVDI 143
+ W +L M LT+LP VT ++ + LP + P PV L LL I+ DI
Sbjct: 193 QAWAALLHMSTWLTSLPTSGLCSHVTSSRRPSPTTLSSLPPLTPAFPVPLTLLWFILPDI 252
>gi|239749075 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 33.5 bits (75), Expect = 0.21
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 84 KGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSADVLPDMLPDLPVSLVLLSLIMVDI 143
+ W +L M LT+LP VT ++ + LP + P PV L LL I+ DI
Sbjct: 119 QAWAALLHMSTWLTSLPTSGLCSHVTSSRRPSPTTLSSLPPLTPAFPVPLTLLWFILPDI 178
>gi|239743101 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 33.5 bits (75), Expect = 0.21
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 84 KGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSADVLPDMLPDLPVSLVLLSLIMVDI 143
+ W +L M LT+LP VT ++ + LP + P PV L LL I+ DI
Sbjct: 119 QAWAALLHMSTWLTSLPTSGLCSHVTSSRRPSPTTLSSLPPLTPAFPVPLTLLWFILPDI 178
>gi|239508755 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 33.5 bits (75), Expect = 0.21
Identities = 20/60 (33%), Positives = 28/60 (46%)
Query: 84 KGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSADVLPDMLPDLPVSLVLLSLIMVDI 143
+ W +L M LT+LP VT ++ + LP + P PV L LL I+ DI
Sbjct: 119 QAWAALLHMSTWLTSLPTSGLCSHVTSSRRPSPTTLSSLPPLTPAFPVPLTLLWFILPDI 178
>gi|166795283 glucagon-like peptide 1 receptor [Homo sapiens]
Length = 463
Score = 32.7 bits (73), Expect = 0.35
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 11 VFELLEFAAFSIPTLVITEQFATAY----QGTRARSDNTHYWLIISCSIAYVALVTLLIW 66
+F L + +P L + Y +G R+ N +YWLII I + V LI+
Sbjct: 265 IFRLYVSIGWGVPLLFVVPWGIVKYLYEDEGCWTRNSNMNYWLIIRLPILFAIGVNFLIF 324
Query: 67 VPVKVILHKK 76
V V I+ K
Sbjct: 325 VRVICIVVSK 334
>gi|209862994 MAP-kinase activating death domain-containing protein
isoform d [Homo sapiens]
Length = 1647
Score = 32.3 bits (72), Expect = 0.46
Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 10/167 (5%)
Query: 108 VTEVQKSINGSADVLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHST 167
++++ + + D D++PD+ +S + M+D++ K + L S + G + S
Sbjct: 980 LSKLNRMVQSEDDARQDIIPDVEISRKVYKG-MLDLL-KCTVLSLEQSYAHAGLGGMASI 1037
Query: 168 -SLQHIKTVTEQVRQSPENAASPQATNSTQVSQPSGAMTRSQESVF-------MGPQEPS 219
L I ++ + SP + +T V + G R +GP+ PS
Sbjct: 1038 FGLLEIAQTHYYSKEPDKRKRSPTESVNTPVGKDPGLAGRGDPKAMAQLRVPQLGPRAPS 1097
Query: 220 CDSGILRMMSRRDVRAELFLWSFLLWSDTIEMDFSHTVKEDLLTVVK 266
+ + R ++ E F+ S LW+ E+ +++ V+K
Sbjct: 1098 ATGKGPKELDTRSLKEENFIASIELWNKHQEVKKQKALEKQRPEVIK 1144
>gi|18860873 MAP-kinase activating death domain-containing protein
isoform g [Homo sapiens]
Length = 1581
Score = 32.3 bits (72), Expect = 0.46
Identities = 33/167 (19%), Positives = 69/167 (41%), Gaps = 10/167 (5%)
Query: 108 VTEVQKSINGSADVLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHST 167
++++ + + D D++PD+ +S + M+D++ K + L S + G + S
Sbjct: 980 LSKLNRMVQSEDDARQDIIPDVEISRKVYKG-MLDLL-KCTVLSLEQSYAHAGLGGMASI 1037
Query: 168 -SLQHIKTVTEQVRQSPENAASPQATNSTQVSQPSGAMTRSQESVF-------MGPQEPS 219
L I ++ + SP + +T V + G R +GP+ PS
Sbjct: 1038 FGLLEIAQTHYYSKEPDKRKRSPTESVNTPVGKDPGLAGRGDPKAMAQLRVPQLGPRAPS 1097
Query: 220 CDSGILRMMSRRDVRAELFLWSFLLWSDTIEMDFSHTVKEDLLTVVK 266
+ + R ++ E F+ S LW+ E+ +++ V+K
Sbjct: 1098 ATGKGPKELDTRSLKEENFIASIELWNKHQEVKKQKALEKQRPEVIK 1144
>gi|239755573 PREDICTED: similar to ectonucleotide
pyrophosphatase/phosphodiesterase 5 (putative function)
[Homo sapiens]
Length = 661
Score = 31.6 bits (70), Expect = 0.78
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Query: 140 MVDIIEKLRIYP----LRGSQKSSENGHIHSTSLQHIKTVTEQVRQSP-ENAASPQATNS 194
+ + + IYP L G + NG + T + + +Q P E+ A+ +
Sbjct: 493 LAETFNSIHIYPFVCKLLGVXPQTHNGSLAVTQEMLVNSYDQQPASEPQEHDANSSKQIA 552
Query: 195 TQVSQPSGAMTRSQESVFMGPQEPSCDSGILRM 227
+V PS R+ ES ++GP+ G L +
Sbjct: 553 REVGNPSTCWRRNCESAYVGPRPDPTIPGTLAL 585
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 30.8 bits (68), Expect = 1.3
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 142 DIIEKLRIYPLRGSQKSSENGHIHSTSLQ-----HIKT--VTEQVRQSPENAASPQATNS 194
D +++ R Y + Q SS++G S+ + H+K V + R SP +ASP
Sbjct: 477 DSVQQRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKR 536
Query: 195 TQVSQPSGAMTRS 207
+ + P G RS
Sbjct: 537 QKETSPRGRRRRS 549
>gi|82659094 phosphatidic acid phosphatase type 2d isoform 1 [Homo
sapiens]
Length = 321
Score = 30.0 bits (66), Expect = 2.3
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 69 VKVILHKKRYIYRKIKGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSADVLPDMLPD 128
V ++ YI IK L V+ L CL F + V + N +DV+ L
Sbjct: 200 VYAAMYLTMYITNTIKAKGTRLAKPVLCLGLMCLAFLTGLNRVAEYRNHWSDVIAGFLVG 259
Query: 129 LPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVRQSP 183
+ +++ L+ + + +G Q +EN HIH +L + ++ +SP
Sbjct: 260 ISIAVFLVVCV---------VNNFKGRQ--AENEHIHMDNLAQMPMISIPRVESP 303
>gi|61102719 phosphatidic acid phosphatase type 2d isoform 2 [Homo
sapiens]
Length = 316
Score = 30.0 bits (66), Expect = 2.3
Identities = 27/115 (23%), Positives = 48/115 (41%), Gaps = 11/115 (9%)
Query: 69 VKVILHKKRYIYRKIKGWRPVLMMCVVLTTLPCLTFSIAVTEVQKSINGSADVLPDMLPD 128
V ++ YI IK L V+ L CL F + V + N +DV+ L
Sbjct: 200 VYAAMYLTMYITNTIKAKGTRLAKPVLCLGLMCLAFLTGLNRVAEYRNHWSDVIAGFLVG 259
Query: 129 LPVSLVLLSLIMVDIIEKLRIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVRQSP 183
+ +++ L+ + + +G Q +EN HIH +L + ++ +SP
Sbjct: 260 ISIAVFLVVCV---------VNNFKGRQ--AENEHIHMDNLAQMPMISIPRVESP 303
>gi|213512168 hypothetical protein LOC259308 [Homo sapiens]
Length = 1335
Score = 29.3 bits (64), Expect = 3.9
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 143 IIEKLRIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVRQSPENAASPQATNS-TQVSQPS 201
++++L I P + E H+ +K V + +QS A + +S +++SQPS
Sbjct: 940 LLQELPIPPDTLPAPNPEGVHLKEQLANDLKAVQQNQKQSNSKAVPQGSAHSVSKISQPS 999
Query: 202 GAMTRS 207
G MT +
Sbjct: 1000 GDMTEA 1005
>gi|12383060 cytochrome P450, family 3, subfamily A, polypeptide 43
isoform 1 [Homo sapiens]
Length = 504
Score = 28.9 bits (63), Expect = 5.1
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 97 TTLPCLTFSIAV-TEVQKSINGSAD-VLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPL 152
TTLP + + +A +VQ+ + D VLP+ P +LV + + + + E LR++P+
Sbjct: 312 TTLPFIMYELATHPDVQQKLQEEIDAVLPNKAPVTYDALVQMEYLDMVVNETLRLFPV 369
>gi|16933535 cytochrome P450, family 3, subfamily A, polypeptide 43
isoform 3 [Homo sapiens]
Length = 420
Score = 28.9 bits (63), Expect = 5.1
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 97 TTLPCLTFSIAV-TEVQKSINGSAD-VLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPL 152
TTLP + + +A +VQ+ + D VLP+ P +LV + + + + E LR++P+
Sbjct: 312 TTLPFIMYELATHPDVQQKLQEEIDAVLPNKAPVTYDALVQMEYLDMVVNETLRLFPV 369
>gi|16933533 cytochrome P450, family 3, subfamily A, polypeptide 43
isoform 2 [Homo sapiens]
Length = 503
Score = 28.9 bits (63), Expect = 5.1
Identities = 18/58 (31%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 97 TTLPCLTFSIAV-TEVQKSINGSAD-VLPDMLPDLPVSLVLLSLIMVDIIEKLRIYPL 152
TTLP + + +A +VQ+ + D VLP+ P +LV + + + + E LR++P+
Sbjct: 312 TTLPFIMYELATHPDVQQKLQEEIDAVLPNKAPVTYDALVQMEYLDMVVNETLRLFPV 369
>gi|197085610 histamine receptor H2 isoform 1 [Homo sapiens]
Length = 397
Score = 28.9 bits (63), Expect = 5.1
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 148 RIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVRQSPENAASPQATNSTQVSQPSGAMTR 206
+++ R + ++S + S + Q +T + + RQ E Q + T+V+ P GA R
Sbjct: 301 QLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDR 359
>gi|13435405 histamine receptor H2 isoform 2 [Homo sapiens]
Length = 359
Score = 28.9 bits (63), Expect = 5.1
Identities = 15/59 (25%), Positives = 29/59 (49%)
Query: 148 RIYPLRGSQKSSENGHIHSTSLQHIKTVTEQVRQSPENAASPQATNSTQVSQPSGAMTR 206
+++ R + ++S + S + Q +T + + RQ E Q + T+V+ P GA R
Sbjct: 301 QLFCCRLANRNSHKTSLRSNASQLSRTQSREPRQQEEKPLKLQVWSGTEVTAPQGATDR 359
>gi|22218339 hypothetical protein LOC90362 [Homo sapiens]
Length = 370
Score = 28.5 bits (62), Expect = 6.6
Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 14/105 (13%)
Query: 145 EKLRIYPLRGSQKSSENG-HI-------HSTSLQHIKTVTEQVRQ----SPENAASPQAT 192
E L++YP +G + E G H+ + S H+ + +R+ P A ++
Sbjct: 161 ESLKVYPTQGRRSPQEGGSHVGRRLLEQSAESFLHVSHSSSDIRKVTSVKPLKAIPCSSS 220
Query: 193 NSTQVSQPSGAMTRSQESVFMGPQEPSCDSGILRMMSRRDVRAEL 237
+P A S +S P EP+C G+ R S + +++L
Sbjct: 221 APPLPPKPKIAAIASMKSPEADPVEPAC--GVSRRPSLQRSKSDL 263
>gi|119120892 hypothetical protein LOC57179 isoform a [Homo sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 6.6
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 164 IHSTSLQHIKTVTEQVRQSPENAASPQAT-NSTQVSQPSGAMTRSQESVFMGPQEPSCDS 222
+H LQ + VT++ RQ ++P T +S+ +P G T + GP + DS
Sbjct: 152 LHKLKLQSGE-VTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDS 210
Query: 223 G 223
G
Sbjct: 211 G 211
>gi|119120888 hypothetical protein LOC57179 isoform b [Homo sapiens]
Length = 286
Score = 28.5 bits (62), Expect = 6.6
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 164 IHSTSLQHIKTVTEQVRQSPENAASPQAT-NSTQVSQPSGAMTRSQESVFMGPQEPSCDS 222
+H LQ + VT++ RQ ++P T +S+ +P G T + GP + DS
Sbjct: 133 LHKLKLQSGE-VTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDS 191
Query: 223 G 223
G
Sbjct: 192 G 192
>gi|19923827 hypothetical protein LOC57179 isoform a [Homo sapiens]
Length = 305
Score = 28.5 bits (62), Expect = 6.6
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 164 IHSTSLQHIKTVTEQVRQSPENAASPQAT-NSTQVSQPSGAMTRSQESVFMGPQEPSCDS 222
+H LQ + VT++ RQ ++P T +S+ +P G T + GP + DS
Sbjct: 152 LHKLKLQSGE-VTKEERQPASAQSTPSTTPHSSPKQRPRGWFTSGSSTALPGPNPSTMDS 210
Query: 223 G 223
G
Sbjct: 211 G 211
>gi|55743071 ATPase, Cu++ transporting, beta polypeptide isoform a
[Homo sapiens]
Length = 1465
Score = 28.1 bits (61), Expect = 8.6
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 31 FATAYQGTRARSDNTHYWLIISCSIAYV-ALVTLLIWVPVK 70
+ AY+ R RS N ++++ SIAYV +LV L++ V K
Sbjct: 715 YVQAYKSLRHRSANMDVLIVLATSIAYVYSLVILVVAVAEK 755
>gi|163937854 ataxin 7-like 1 isoform 1 [Homo sapiens]
Length = 861
Score = 28.1 bits (61), Expect = 8.6
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 172 IKTVTEQVRQSPENAA-SPQATNSTQVSQPSGAMTRSQESVFMGPQEPSC 220
+K ++ + +SP N PQ++ S+ S S ++ S S GP + +C
Sbjct: 629 VKDLSTRSDESPSNKKRKPQSSTSSSSSSSSSSLQTSLSSPLSGPHKKNC 678
>gi|211971080 ataxin 7-like 1 isoform 3 [Homo sapiens]
Length = 738
Score = 28.1 bits (61), Expect = 8.6
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 172 IKTVTEQVRQSPENAA-SPQATNSTQVSQPSGAMTRSQESVFMGPQEPSC 220
+K ++ + +SP N PQ++ S+ S S ++ S S GP + +C
Sbjct: 505 VKDLSTRSDESPSNKKRKPQSSTSSSSSSSSSSLQTSLSSPLSGPHKKNC 554
>gi|17998700 phosphatidylinositol glycan anchor biosynthesis, class
U [Homo sapiens]
Length = 435
Score = 28.1 bits (61), Expect = 8.6
Identities = 20/81 (24%), Positives = 40/81 (49%), Gaps = 8/81 (9%)
Query: 57 YVALVTLLIWVPVKVILHKKRYIYRKIK-------GWRPVLMMCVVLTTLPCLTFSIAVT 109
Y +L L ++VP + L +++YI K+K W +M L + CL+F + +
Sbjct: 191 YQSLYPLTLFVPGLLYLLQRQYIPVKMKSKAFWIFSWEYAMMYVGSLVVIICLSFFLLSS 250
Query: 110 -EVQKSINGSADVLPDMLPDL 129
+ ++ G +PD+ P++
Sbjct: 251 WDFIPAVYGFILSVPDLTPNI 271
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.134 0.392
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,226,046
Number of Sequences: 37866
Number of extensions: 361514
Number of successful extensions: 1303
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 34
length of query: 274
length of database: 18,247,518
effective HSP length: 101
effective length of query: 173
effective length of database: 14,423,052
effective search space: 2495187996
effective search space used: 2495187996
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.